Wall clock time and date at job start Tue Mar 31 2020 20:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46943 * 2 1 4 4 C 1.50695 * 109.47538 * 120.00570 * 2 1 3 5 5 N 1.30495 * 125.65200 * 300.17219 * 4 2 1 6 6 C 1.34125 * 109.25896 * 180.28901 * 5 4 2 7 7 C 1.34664 * 108.01996 * 359.73197 * 6 5 4 8 8 N 1.35043 * 125.65121 * 120.00129 * 4 2 1 9 9 C 1.46499 * 126.39614 * 359.97138 * 8 4 2 10 10 C 1.50703 * 109.47156 * 84.71791 * 9 8 4 11 11 O 1.21282 * 119.99698 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00096 * 179.97438 * 10 9 8 13 13 C 1.48114 * 127.03607 * 359.95990 * 12 10 9 14 14 C 1.54942 * 103.25311 * 140.74145 * 13 12 10 15 15 C 1.54614 * 102.83969 * 37.37977 * 14 13 12 16 16 C 1.52993 * 110.32981 * 97.03924 * 15 14 13 17 17 C 1.53000 * 110.32524 * 219.25781 * 15 14 13 18 18 N 1.46508 * 109.46980 * 295.61939 * 17 15 14 19 19 C 1.36935 * 119.99877 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00043 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99750 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99669 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00072 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.46968 * 89.99937 * 23 21 19 25 25 H 1.48496 * 109.46847 * 210.00293 * 23 21 19 26 26 H 1.48502 * 109.46917 * 329.99839 * 23 21 19 27 27 C 1.47485 * 127.02864 * 179.97438 * 12 10 9 28 28 H 1.09005 * 109.46740 * 299.99306 * 1 2 3 29 29 H 1.08999 * 109.47076 * 59.99148 * 1 2 3 30 30 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47189 * 240.00965 * 2 1 3 32 32 H 1.09005 * 109.46836 * 60.00752 * 3 2 1 33 33 H 1.09008 * 109.46772 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47531 * 300.00690 * 3 2 1 35 35 H 1.07997 * 125.98967 * 179.72646 * 6 5 4 36 36 H 1.08000 * 126.59673 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47609 * 324.72196 * 9 8 4 38 38 H 1.09002 * 109.47624 * 204.71892 * 9 8 4 39 39 H 1.08998 * 110.66152 * 259.18486 * 13 12 10 40 40 H 1.08999 * 110.65867 * 22.13220 * 13 12 10 41 41 H 1.08994 * 110.73972 * 279.03665 * 14 13 12 42 42 H 1.09004 * 110.73609 * 155.71278 * 14 13 12 43 43 H 1.08999 * 109.47492 * 304.37901 * 16 15 14 44 44 H 1.09005 * 109.47303 * 64.37971 * 16 15 14 45 45 H 1.09002 * 109.47437 * 184.37673 * 16 15 14 46 46 H 1.08997 * 109.47573 * 55.61851 * 17 15 14 47 47 H 1.08994 * 109.47450 * 175.62118 * 17 15 14 48 48 H 0.96994 * 119.99912 * 359.97438 * 18 17 15 49 49 H 0.96998 * 119.99940 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.91439 * 86.05464 * 27 12 10 51 51 H 1.08996 * 110.08042 * 324.86301 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7836 -0.3641 2.4636 6 6 2.3971 -1.2187 3.2955 7 6 3.0462 -2.1328 2.5495 8 7 2.8121 -1.8130 1.2393 9 6 3.3181 -2.5295 0.0658 10 6 4.5862 -1.8727 -0.4155 11 8 5.0244 -0.9021 0.1648 12 7 5.2339 -2.3646 -1.4903 13 6 4.8422 -3.5348 -2.3094 14 6 5.1724 -3.0834 -3.7544 15 6 6.4754 -2.2714 -3.5714 16 6 7.6935 -3.1453 -3.8766 17 6 6.4645 -1.0380 -4.4767 18 7 6.4620 -1.4615 -5.8792 19 6 6.4531 -0.5243 -6.8774 20 1 6.4475 0.5272 -6.6309 21 6 6.4503 -0.9256 -8.2063 22 7 6.4423 -0.0247 -9.1658 23 14 6.4593 -2.7443 -8.6327 24 1 5.0617 -3.2344 -8.7402 25 1 7.1555 -2.9453 -9.9288 26 1 7.1680 -3.4988 -7.5679 27 6 6.4778 -1.8478 -2.0910 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6766 1.9565 -0.8899 35 1 2.3747 -1.1804 4.3746 36 1 3.6380 -2.9591 2.9146 37 1 2.5709 -2.5014 -0.7272 38 1 3.5247 -3.5656 0.3338 39 1 5.4313 -4.4102 -2.0359 40 1 3.7773 -3.7404 -2.2018 41 1 4.3775 -2.4531 -4.1530 42 1 5.3424 -3.9459 -4.3989 43 1 7.6661 -4.0379 -3.2517 44 1 7.6778 -3.4365 -4.9269 45 1 8.6046 -2.5841 -3.6689 46 1 5.5716 -0.4465 -4.2743 47 1 7.3514 -0.4355 -4.2807 48 1 6.4675 -2.4059 -6.1006 49 1 6.4399 -0.3052 -10.0943 50 1 7.3415 -2.2775 -1.5836 51 1 6.5062 -0.7608 -2.0159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484113761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:37 Heat of formation + Delta-G solvation = 41.087999 kcal Electronic energy + Delta-G solvation = -29765.327587 eV Core-core repulsion = 25894.207319 eV Total energy + Delta-G solvation = -3871.120268 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.37988 -40.36200 -38.34569 -35.49981 -35.14344 -34.22378 -32.85168 -30.84360 -29.73960 -29.12177 -28.46918 -27.26404 -26.60280 -25.52533 -23.44483 -22.99829 -22.14956 -21.49208 -20.14120 -19.28457 -18.90123 -17.89955 -17.58551 -17.09169 -16.36643 -15.90827 -15.29929 -14.83216 -14.64378 -14.58259 -14.43070 -14.08341 -13.89537 -13.79702 -13.58153 -13.50905 -13.36252 -13.03948 -12.71539 -12.61257 -12.55628 -12.36089 -12.24587 -12.05955 -11.66044 -11.64981 -11.46593 -11.32448 -11.11526 -10.97793 -10.78777 -10.60393 -10.54576 -10.42302 -10.12294 -10.06952 -9.65482 -9.61559 -8.97652 -8.95122 -8.47237 -7.29886 -5.82303 -3.18269 1.75394 2.21966 2.33944 2.82079 3.06357 3.28393 3.30476 3.38544 3.98368 4.16831 4.22643 4.41958 4.44815 4.51936 4.54515 4.55571 4.79295 4.84323 4.97603 5.02000 5.07746 5.12076 5.20024 5.32441 5.44698 5.49158 5.49814 5.54202 5.59083 5.63447 5.66816 5.69344 5.71415 5.75972 5.82540 5.91958 6.02019 6.02730 6.13898 6.15637 6.21613 6.22673 6.37486 6.56516 6.62274 6.63368 6.94573 7.21312 7.78613 7.93776 7.99384 8.36396 9.15103 9.86807 10.06554 11.36217 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.002759 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.620945 B =10147.076490 C =10976.337274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.009 4.009 3 C -0.139 4.139 4 C 0.232 3.768 5 N -0.486 5.486 6 C -0.026 4.026 7 C -0.055 4.055 8 N -0.443 5.443 9 C 0.089 3.911 10 C 0.513 3.487 11 O -0.519 6.519 12 N -0.615 5.615 13 C 0.095 3.905 14 C -0.123 4.123 15 C -0.084 4.084 16 C -0.135 4.135 17 C 0.172 3.828 18 N -0.752 5.752 19 C -0.244 4.244 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.119 3.881 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.169 0.831 36 H 0.171 0.829 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.029 0.971 47 H 0.029 0.971 48 H 0.361 0.639 49 H 0.260 0.740 50 H 0.069 0.931 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -10.536 20.943 24.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.030 4.030 5 N -0.204 5.204 6 C -0.174 4.174 7 C -0.187 4.187 8 N -0.126 5.126 9 C -0.038 4.038 10 C 0.299 3.701 11 O -0.394 6.394 12 N -0.350 5.350 13 C -0.028 4.028 14 C -0.161 4.161 15 C -0.085 4.085 16 C -0.192 4.192 17 C 0.045 3.955 18 N -0.398 5.398 19 C -0.374 4.374 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.003 4.003 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.186 0.814 36 H 0.188 0.812 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.085 0.915 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.047 0.953 48 H 0.194 0.806 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -8.300 -9.155 21.391 24.704 hybrid contribution 0.785 -2.214 -0.745 2.464 sum -7.516 -11.369 20.646 24.739 Atomic orbital electron populations 1.21791 0.93002 1.01986 1.02930 1.19559 0.96491 0.96292 0.90577 1.21762 1.01747 0.93697 1.02527 1.23208 0.96121 0.87996 0.95711 1.70183 1.24533 1.26814 0.98917 1.22218 1.01203 0.94449 0.99497 1.22593 1.08227 1.05281 0.82565 1.44875 1.38487 1.23422 1.05775 1.21628 0.95868 0.97326 0.89007 1.20245 0.85358 0.84569 0.79923 1.90803 1.67000 1.26144 1.55479 1.48771 1.26721 1.30958 1.28526 1.22718 1.00485 0.88379 0.91230 1.22828 0.98031 1.00610 0.94658 1.21715 0.95723 0.97491 0.93572 1.21839 0.96735 0.98371 1.02276 1.20671 0.98844 0.92167 0.83850 1.42686 1.91169 1.05048 1.00911 1.19052 1.43005 0.90067 0.85278 0.89257 1.24674 1.02086 0.96850 0.95503 1.69698 1.57471 1.31800 0.99138 0.86575 0.77721 0.86716 0.77614 1.21077 1.21712 1.20386 1.22147 0.85417 1.00685 0.92076 0.91286 0.91647 0.92913 0.90601 0.91495 0.92170 0.91768 0.81408 0.81169 0.86133 0.86077 0.90520 0.90327 0.89673 0.89815 0.93151 0.91459 0.92144 0.95343 0.95283 0.80558 0.93016 0.91264 0.90004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 2 C -0.01 -0.10 3.25 -91.77 -0.30 -0.39 16 3 C -0.14 -1.60 9.18 37.16 0.34 -1.26 16 4 C 0.23 2.91 6.39 -155.42 -0.99 1.91 16 5 N -0.49 -6.72 11.25 -10.82 -0.12 -6.84 16 6 C -0.03 -0.31 11.87 -17.82 -0.21 -0.52 16 7 C -0.06 -0.57 11.58 -16.56 -0.19 -0.76 16 8 N -0.44 -4.87 2.24 -115.19 -0.26 -5.13 16 9 C 0.09 0.73 5.09 -5.19 -0.03 0.71 16 10 C 0.51 6.04 7.96 -10.98 -0.09 5.95 16 11 O -0.52 -8.47 16.76 5.56 0.09 -8.37 16 12 N -0.61 -6.56 3.29 -169.78 -0.56 -7.12 16 13 C 0.09 0.75 6.95 -2.13 -0.01 0.74 16 14 C -0.12 -1.37 5.73 -24.86 -0.14 -1.52 16 15 C -0.08 -1.10 0.67 -153.15 -0.10 -1.20 16 16 C -0.13 -1.68 8.05 37.15 0.30 -1.38 16 17 C 0.17 3.08 4.85 -4.04 -0.02 3.06 16 18 N -0.75 -16.58 4.92 -59.91 -0.29 -16.88 16 19 C -0.24 -6.68 10.47 -15.06 -0.16 -6.83 16 20 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -28.79 13.97 55.49 0.78 -28.01 16 23 Si 0.88 21.11 27.74 -169.99 -4.71 16.39 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.09 6.52 56.52 0.37 -5.72 16 27 C 0.12 1.46 6.28 -2.99 -0.02 1.44 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.76 6.85 -51.93 -0.36 0.40 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.17 1.51 8.06 -52.49 -0.42 1.09 16 36 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 37 H 0.12 0.75 7.07 -51.93 -0.37 0.39 16 38 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.43 7.23 -51.93 -0.38 0.05 16 41 H 0.08 1.09 7.84 -51.93 -0.41 0.68 16 42 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.07 0.97 6.75 -51.93 -0.35 0.62 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.54 8.11 -51.93 -0.42 0.12 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.36 7.62 4.04 -40.82 -0.16 7.45 16 49 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 50 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 51 H 0.08 1.15 7.60 -51.93 -0.39 0.76 16 LS Contribution 406.96 15.07 6.13 6.13 Total: -1.00 -35.56 406.96 -9.06 -44.62 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -8.73 Total: 6.14 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -1.38 Total: -0.94 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.46 Total: -63.97 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.37 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.71 Total: 16.39 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.56 -9.06 -44.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484113761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.704 kcal (2) G-P(sol) polarization free energy of solvation -35.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds