Wall clock time and date at job start Tue Mar 31 2020 20:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46943 * 2 1 4 4 C 1.50695 * 109.47538 * 120.00570 * 2 1 3 5 5 N 1.30495 * 125.65200 * 300.17219 * 4 2 1 6 6 C 1.34125 * 109.25896 * 180.28901 * 5 4 2 7 7 C 1.34664 * 108.01996 * 359.73197 * 6 5 4 8 8 N 1.35043 * 125.65121 * 120.00129 * 4 2 1 9 9 C 1.46499 * 126.39614 * 359.97138 * 8 4 2 10 10 C 1.50703 * 109.47156 * 84.71791 * 9 8 4 11 11 O 1.21282 * 119.99698 * 0.02562 * 10 9 8 12 12 N 1.34777 * 120.00096 * 179.97438 * 10 9 8 13 13 C 1.48114 * 127.03607 * 359.95990 * 12 10 9 14 14 C 1.54942 * 103.25311 * 140.74145 * 13 12 10 15 15 C 1.54614 * 102.83969 * 37.37977 * 14 13 12 16 16 C 1.52993 * 110.32981 * 97.03924 * 15 14 13 17 17 C 1.53000 * 110.32524 * 219.25781 * 15 14 13 18 18 N 1.46508 * 109.46980 * 295.61939 * 17 15 14 19 19 C 1.36935 * 119.99877 * 180.02562 * 18 17 15 20 20 H 1.08000 * 120.00043 * 359.97438 * 19 18 17 21 21 C 1.38817 * 119.99750 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99669 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00072 * 359.97438 * 21 19 18 24 24 H 1.48491 * 109.46968 * 89.99937 * 23 21 19 25 25 H 1.48496 * 109.46847 * 210.00293 * 23 21 19 26 26 H 1.48502 * 109.46917 * 329.99839 * 23 21 19 27 27 C 1.47485 * 127.02864 * 179.97438 * 12 10 9 28 28 H 1.09005 * 109.46740 * 299.99306 * 1 2 3 29 29 H 1.08999 * 109.47076 * 59.99148 * 1 2 3 30 30 H 1.08996 * 109.46731 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47189 * 240.00965 * 2 1 3 32 32 H 1.09005 * 109.46836 * 60.00752 * 3 2 1 33 33 H 1.09008 * 109.46772 * 180.02562 * 3 2 1 34 34 H 1.08999 * 109.47531 * 300.00690 * 3 2 1 35 35 H 1.07997 * 125.98967 * 179.72646 * 6 5 4 36 36 H 1.08000 * 126.59673 * 179.97438 * 7 6 5 37 37 H 1.08997 * 109.47609 * 324.72196 * 9 8 4 38 38 H 1.09002 * 109.47624 * 204.71892 * 9 8 4 39 39 H 1.08998 * 110.66152 * 259.18486 * 13 12 10 40 40 H 1.08999 * 110.65867 * 22.13220 * 13 12 10 41 41 H 1.08994 * 110.73972 * 279.03665 * 14 13 12 42 42 H 1.09004 * 110.73609 * 155.71278 * 14 13 12 43 43 H 1.08999 * 109.47492 * 304.37901 * 16 15 14 44 44 H 1.09005 * 109.47303 * 64.37971 * 16 15 14 45 45 H 1.09002 * 109.47437 * 184.37673 * 16 15 14 46 46 H 1.08997 * 109.47573 * 55.61851 * 17 15 14 47 47 H 1.08994 * 109.47450 * 175.62118 * 17 15 14 48 48 H 0.96994 * 119.99912 * 359.97438 * 18 17 15 49 49 H 0.96998 * 119.99940 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.91439 * 86.05464 * 27 12 10 51 51 H 1.08996 * 110.08042 * 324.86301 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 1.2303 5 7 1.7836 -0.3641 2.4636 6 6 2.3971 -1.2187 3.2955 7 6 3.0462 -2.1328 2.5495 8 7 2.8121 -1.8130 1.2393 9 6 3.3181 -2.5295 0.0658 10 6 4.5862 -1.8727 -0.4155 11 8 5.0244 -0.9021 0.1648 12 7 5.2339 -2.3646 -1.4903 13 6 4.8422 -3.5348 -2.3094 14 6 5.1724 -3.0834 -3.7544 15 6 6.4754 -2.2714 -3.5714 16 6 7.6935 -3.1453 -3.8766 17 6 6.4645 -1.0380 -4.4767 18 7 6.4620 -1.4615 -5.8792 19 6 6.4531 -0.5243 -6.8774 20 1 6.4475 0.5272 -6.6309 21 6 6.4503 -0.9256 -8.2063 22 7 6.4423 -0.0247 -9.1658 23 14 6.4593 -2.7443 -8.6327 24 1 5.0617 -3.2344 -8.7402 25 1 7.1555 -2.9453 -9.9288 26 1 7.1680 -3.4988 -7.5679 27 6 6.4778 -1.8478 -2.0910 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3632 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8901 32 1 1.6767 1.9563 0.8901 33 1 3.1301 1.4425 -0.0005 34 1 1.6766 1.9565 -0.8899 35 1 2.3747 -1.1804 4.3746 36 1 3.6380 -2.9591 2.9146 37 1 2.5709 -2.5014 -0.7272 38 1 3.5247 -3.5656 0.3338 39 1 5.4313 -4.4102 -2.0359 40 1 3.7773 -3.7404 -2.2018 41 1 4.3775 -2.4531 -4.1530 42 1 5.3424 -3.9459 -4.3989 43 1 7.6661 -4.0379 -3.2517 44 1 7.6778 -3.4365 -4.9269 45 1 8.6046 -2.5841 -3.6689 46 1 5.5716 -0.4465 -4.2743 47 1 7.3514 -0.4355 -4.2807 48 1 6.4675 -2.4059 -6.1006 49 1 6.4399 -0.3052 -10.0943 50 1 7.3415 -2.2775 -1.5836 51 1 6.5062 -0.7608 -2.0159 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484113761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:35 Heat of formation + Delta-G solvation = 18.116274 kcal Electronic energy + Delta-G solvation = -29766.323716 eV Core-core repulsion = 25894.207319 eV Total energy + Delta-G solvation = -3872.116397 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.18021 -41.28329 -39.39212 -36.65265 -36.31686 -35.06473 -34.38795 -32.64891 -30.59850 -29.94885 -29.30644 -28.09355 -27.90385 -26.77840 -24.44163 -23.87293 -23.79782 -22.30172 -20.99322 -20.48973 -19.84249 -19.51316 -18.49155 -18.02033 -17.25967 -16.78388 -16.53553 -16.09907 -15.87257 -15.64931 -15.28763 -15.22220 -15.07684 -15.06127 -14.61899 -14.45064 -14.26760 -14.24326 -13.87027 -13.61672 -13.45550 -13.37930 -13.22412 -13.06087 -12.98325 -12.84583 -12.61047 -12.44595 -12.17482 -12.16300 -11.99432 -11.94577 -11.72087 -11.56556 -11.49477 -11.39052 -10.98491 -10.93146 -10.50171 -9.83104 -9.30901 -9.28002 -8.02601 -5.37040 0.94022 1.36920 1.38560 1.43360 1.50798 1.61692 2.03788 2.20687 2.49264 3.20403 3.28440 3.38264 3.48916 3.60076 3.65764 3.70760 3.79029 3.98646 4.01184 4.09718 4.15482 4.21149 4.28611 4.31271 4.39898 4.57862 4.61487 4.69032 4.70485 4.74711 4.75254 4.84984 4.86327 4.88495 4.91361 4.96600 5.02183 5.06345 5.16015 5.22570 5.22900 5.28426 5.32970 5.39060 5.48634 5.74526 5.86166 6.15003 6.20461 6.41289 6.93959 7.08070 7.16425 7.81667 8.05112 9.19337 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016597 B = 0.002759 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1686.620945 B =10147.076490 C =10976.337274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.010 4.010 3 C -0.134 4.134 4 C 0.213 3.787 5 N -0.522 5.522 6 C -0.056 4.056 7 C -0.047 4.047 8 N -0.446 5.446 9 C 0.090 3.910 10 C 0.510 3.490 11 O -0.576 6.576 12 N -0.612 5.612 13 C 0.101 3.899 14 C -0.126 4.126 15 C -0.075 4.075 16 C -0.131 4.131 17 C 0.170 3.830 18 N -0.746 5.746 19 C -0.238 4.238 20 H 0.046 0.954 21 C -0.066 4.066 22 N -0.987 5.987 23 Si 0.959 3.041 24 H -0.272 1.272 25 H -0.299 1.299 26 H -0.242 1.242 27 C 0.123 3.877 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.057 0.943 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.184 0.816 36 H 0.205 0.795 37 H 0.146 0.854 38 H 0.166 0.834 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.087 0.913 44 H 0.049 0.951 45 H 0.053 0.947 46 H 0.012 0.988 47 H 0.013 0.987 48 H 0.371 0.629 49 H 0.258 0.742 50 H 0.085 0.915 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.727 -15.407 21.969 28.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.030 4.030 3 C -0.192 4.192 4 C -0.050 4.050 5 N -0.241 5.241 6 C -0.202 4.202 7 C -0.179 4.179 8 N -0.128 5.128 9 C -0.035 4.035 10 C 0.298 3.702 11 O -0.455 6.455 12 N -0.346 5.346 13 C -0.020 4.020 14 C -0.165 4.165 15 C -0.076 4.076 16 C -0.189 4.189 17 C 0.044 3.956 18 N -0.393 5.393 19 C -0.369 4.369 20 H 0.064 0.936 21 C -0.257 4.257 22 N -0.637 5.637 23 Si 0.785 3.215 24 H -0.198 1.198 25 H -0.226 1.226 26 H -0.166 1.166 27 C 0.000 4.000 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.103 0.897 32 H 0.076 0.924 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.201 0.799 36 H 0.222 0.778 37 H 0.163 0.837 38 H 0.183 0.817 39 H 0.126 0.874 40 H 0.132 0.868 41 H 0.082 0.918 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.030 0.970 47 H 0.031 0.969 48 H 0.206 0.794 49 H 0.067 0.933 50 H 0.103 0.897 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.967 -14.073 22.452 27.975 hybrid contribution 1.041 -0.534 -1.028 1.558 sum -7.926 -14.608 21.424 27.115 Atomic orbital electron populations 1.21726 0.91631 1.02623 1.02934 1.19621 0.97588 0.95290 0.90522 1.21698 0.99746 0.95016 1.02766 1.23426 0.96911 0.88902 0.95723 1.70118 1.25869 1.28061 1.00016 1.22668 1.02077 0.94990 1.00511 1.23147 1.07121 1.05380 0.82243 1.45056 1.37894 1.23119 1.06766 1.21947 0.94247 0.98470 0.88852 1.20915 0.86000 0.83800 0.79469 1.90792 1.68621 1.28702 1.57410 1.48833 1.25892 1.31543 1.28324 1.22956 1.03409 0.87685 0.87945 1.22846 0.95819 1.00353 0.97441 1.21558 0.97924 0.95476 0.92669 1.21820 0.95733 0.99455 1.01857 1.20754 0.97164 0.94752 0.82960 1.42553 1.90799 1.04538 1.01415 1.18987 1.41733 0.89345 0.86848 0.93572 1.25602 1.02335 1.02655 0.95151 1.69911 1.59517 1.34795 0.99515 0.85368 0.78472 0.80070 0.77630 1.19798 1.22623 1.16623 1.21966 0.87156 0.99087 0.91811 0.92575 0.90288 0.91925 0.89711 0.92372 0.95053 0.90364 0.79912 0.77840 0.83651 0.81699 0.87369 0.86767 0.91771 0.88344 0.89400 0.93175 0.92820 0.97019 0.96888 0.79436 0.93318 0.89718 0.93153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 9.18 71.98 0.66 -1.56 16 2 C -0.01 -0.21 3.25 -11.54 -0.04 -0.25 16 3 C -0.13 -3.21 9.18 71.98 0.66 -2.55 16 4 C 0.21 5.19 6.39 138.13 0.88 6.07 16 5 N -0.52 -14.46 11.25 -188.15 -2.12 -16.58 16 6 C -0.06 -1.27 11.87 83.52 0.99 -0.28 16 7 C -0.05 -0.87 11.58 83.09 0.96 0.09 16 8 N -0.45 -8.77 2.24 -518.36 -1.16 -9.94 16 9 C 0.09 1.12 5.09 85.63 0.44 1.56 16 10 C 0.51 10.79 7.96 87.66 0.70 11.49 16 11 O -0.58 -18.72 16.76 -3.04 -0.05 -18.77 16 12 N -0.61 -11.15 3.29 -809.44 -2.66 -13.82 16 13 C 0.10 1.05 6.95 86.73 0.60 1.65 16 14 C -0.13 -2.36 5.73 31.81 0.18 -2.17 16 15 C -0.08 -1.82 0.67 -51.30 -0.03 -1.85 16 16 C -0.13 -2.84 8.05 71.98 0.58 -2.26 16 17 C 0.17 6.22 4.85 86.38 0.42 6.64 16 18 N -0.75 -32.80 4.92 -343.44 -1.69 -34.49 16 19 C -0.24 -13.42 10.47 84.03 0.88 -12.54 16 20 H 0.05 2.93 8.06 -2.91 -0.02 2.91 16 21 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 22 N -0.99 -62.91 13.97 21.65 0.30 -62.61 16 23 Si 0.96 42.95 27.74 68.60 1.90 44.85 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.30 -13.82 7.11 99.48 0.71 -13.12 16 26 H -0.24 -9.33 6.52 99.48 0.65 -8.68 16 27 C 0.12 2.83 6.28 86.52 0.54 3.37 16 28 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.58 6.85 -2.38 -0.02 1.56 16 32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.03 0.90 8.14 -2.38 -0.02 0.89 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.18 3.20 8.06 -2.91 -0.02 3.17 16 36 H 0.20 2.15 8.06 -2.91 -0.02 2.12 16 37 H 0.15 1.11 7.07 -2.39 -0.02 1.09 16 38 H 0.17 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.11 0.46 7.23 -2.39 -0.02 0.44 16 41 H 0.06 1.49 7.84 -2.39 -0.02 1.47 16 42 H 0.10 1.59 7.85 -2.38 -0.02 1.58 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.05 1.27 6.75 -2.38 -0.02 1.26 16 45 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.01 0.47 8.11 -2.39 -0.02 0.45 16 47 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.37 14.85 4.04 -92.71 -0.37 14.47 16 49 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 50 H 0.08 1.71 7.68 -2.39 -0.02 1.69 16 51 H 0.05 1.47 7.60 -2.39 -0.02 1.45 16 Total: -1.00 -84.38 406.96 3.89 -80.49 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.47 Total: 26.83 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 8.89 Total: 4.03 kcal Atomic # 7 Polarization: -130.10 SS G_CDS: -7.33 Total: -137.43 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.05 Total: -18.77 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 1.90 Total: 44.85 kcal Total: -84.38 3.89 -80.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484113761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.607 kcal (2) G-P(sol) polarization free energy of solvation -84.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds