Wall clock time and date at job start Tue Mar 31 2020 20:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30499 * 125.64940 * 59.69081 * 4 2 1 6 6 C 1.34122 * 109.25762 * 179.89641 * 5 4 2 7 7 C 1.34663 * 108.02300 * 0.36789 * 6 5 4 8 8 N 1.35039 * 125.65216 * 240.00171 * 4 2 1 9 9 C 1.46501 * 126.39902 * 359.97438 * 8 4 2 10 10 C 1.50704 * 109.46609 * 84.99982 * 9 8 4 11 11 O 1.21274 * 120.00266 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99801 * 179.97438 * 10 9 8 13 13 C 1.48122 * 127.03717 * 359.68722 * 12 10 9 14 14 C 1.54588 * 103.42797 * 219.28362 * 13 12 10 15 15 C 1.54617 * 102.91405 * 322.87014 * 14 13 12 16 16 C 1.52999 * 110.32721 * 262.80587 * 15 14 13 17 17 C 1.52998 * 110.33206 * 140.58733 * 15 14 13 18 18 N 1.46496 * 109.47084 * 64.37879 * 17 15 14 19 19 C 1.36936 * 120.00392 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99345 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00147 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00498 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99950 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47095 * 59.99977 * 23 21 19 25 25 H 1.48495 * 109.47314 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46875 * 300.00045 * 23 21 19 27 27 C 1.47485 * 127.03429 * 180.02562 * 12 10 9 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08006 * 125.98831 * 180.11877 * 6 5 4 36 36 H 1.08001 * 126.59743 * 179.74667 * 7 6 5 37 37 H 1.08993 * 109.47586 * 204.99914 * 9 8 4 38 38 H 1.08994 * 109.47002 * 325.00875 * 9 8 4 39 39 H 1.08999 * 110.65527 * 337.77139 * 13 12 10 40 40 H 1.09001 * 110.65782 * 100.87788 * 13 12 10 41 41 H 1.08992 * 110.83790 * 204.44314 * 14 13 12 42 42 H 1.09008 * 110.72785 * 81.23715 * 14 13 12 43 43 H 1.08994 * 109.47331 * 175.61806 * 16 15 14 44 44 H 1.09003 * 109.47341 * 295.62116 * 16 15 14 45 45 H 1.09001 * 109.46831 * 55.61569 * 16 15 14 46 46 H 1.09001 * 109.47135 * 184.37626 * 17 15 14 47 47 H 1.09000 * 109.46936 * 304.37906 * 17 15 14 48 48 H 0.97008 * 119.99755 * 359.97438 * 18 17 15 49 49 H 0.96999 * 120.00650 * 179.97438 * 22 21 19 50 50 H 1.09008 * 109.91364 * 273.87923 * 27 12 10 51 51 H 1.09001 * 109.91678 * 35.15653 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7814 -0.3654 -2.4636 6 6 2.3923 -1.2218 -3.2956 7 6 3.0401 -2.1370 -2.5497 8 7 2.8120 -1.8130 -1.2394 9 6 3.3189 -2.5290 -0.0660 10 6 2.2797 -3.5106 0.4110 11 8 1.2203 -3.6034 -0.1721 12 7 2.5280 -4.2862 1.4848 13 6 3.7621 -4.3076 2.3037 14 6 3.9639 -5.8094 2.6097 15 6 2.5176 -6.3191 2.8073 16 6 2.1690 -6.3650 4.2964 17 6 2.3514 -7.7039 2.1785 18 7 3.2037 -8.6653 2.8824 19 6 3.2219 -9.9779 2.4927 20 1 2.6082 -10.3043 1.6661 21 6 4.0299 -10.8887 3.1594 22 7 4.7789 -10.4907 4.1658 23 14 4.0553 -12.6792 2.6273 24 1 4.5032 -12.7693 1.2143 25 1 4.9925 -13.4395 3.4925 26 1 2.6908 -13.2519 2.7516 27 6 1.6292 -5.2921 2.0810 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 2.3658 -1.1864 -4.3748 36 1 3.6263 -2.9672 -2.9149 37 1 4.2296 -3.0650 -0.3328 38 1 3.5366 -1.8156 0.7288 39 1 4.6063 -3.9145 1.7371 40 1 3.6213 -3.7446 3.2263 41 1 4.5484 -5.9445 3.5197 42 1 4.4394 -6.3141 1.7686 43 1 1.1241 -6.6509 4.4163 44 1 2.8052 -7.0954 4.7962 45 1 2.3295 -5.3812 4.7375 46 1 1.3100 -8.0161 2.2571 47 1 2.6403 -7.6631 1.1283 48 1 3.7557 -8.3719 3.6242 49 1 5.3433 -11.1272 4.6319 50 1 0.9569 -4.8136 2.7932 51 1 1.0541 -5.7866 1.2982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484113763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:44 Heat of formation + Delta-G solvation = 36.354158 kcal Electronic energy + Delta-G solvation = -29474.164868 eV Core-core repulsion = 25602.839325 eV Total energy + Delta-G solvation = -3871.325543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.35593 -40.27110 -38.23750 -35.56884 -34.96505 -34.18481 -32.81348 -30.45220 -29.59510 -29.08325 -28.39731 -27.35895 -26.35051 -25.33906 -23.36205 -23.02262 -22.47854 -21.47546 -20.10793 -19.16742 -18.78293 -17.67639 -17.34512 -16.97225 -16.39835 -15.67592 -15.33865 -14.87133 -14.68880 -14.48051 -14.31239 -14.05577 -13.83333 -13.73427 -13.58186 -13.38831 -13.16376 -13.07541 -12.67790 -12.63342 -12.41269 -12.34447 -12.22999 -11.84974 -11.72631 -11.48939 -11.41130 -11.19839 -11.08240 -10.85608 -10.72205 -10.48799 -10.44830 -10.34171 -10.06547 -10.01378 -9.73734 -9.58372 -8.93283 -8.86944 -8.45211 -6.98379 -5.82961 -3.11152 1.78761 2.28186 2.37794 2.88633 3.07698 3.40321 3.45042 3.45799 4.05822 4.13722 4.27647 4.42923 4.51780 4.54232 4.61084 4.73100 4.83698 4.89817 4.95097 5.02938 5.14532 5.25400 5.33231 5.33492 5.42732 5.48738 5.52572 5.62346 5.62409 5.65434 5.73191 5.75080 5.79798 5.85076 5.97946 5.99457 6.09660 6.11039 6.17295 6.17819 6.31372 6.39571 6.58432 6.65023 6.69313 6.76300 6.97155 7.29391 7.64853 7.85029 8.00401 8.36404 9.48075 10.04278 10.39703 11.39842 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.002334 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.762793 B =11994.327522 C =12569.858828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.139 4.139 4 C 0.227 3.773 5 N -0.486 5.486 6 C -0.028 4.028 7 C -0.050 4.050 8 N -0.442 5.442 9 C 0.088 3.912 10 C 0.513 3.487 11 O -0.522 6.522 12 N -0.614 5.614 13 C 0.094 3.906 14 C -0.119 4.119 15 C -0.079 4.079 16 C -0.133 4.133 17 C 0.167 3.833 18 N -0.728 5.728 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.934 5.934 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.118 3.882 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.047 0.953 46 H 0.021 0.979 47 H 0.019 0.981 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.069 0.931 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.219 22.823 -4.555 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.197 4.197 4 C -0.036 4.036 5 N -0.205 5.205 6 C -0.175 4.175 7 C -0.182 4.182 8 N -0.124 5.124 9 C -0.038 4.038 10 C 0.299 3.701 11 O -0.397 6.397 12 N -0.349 5.349 13 C -0.029 4.029 14 C -0.157 4.157 15 C -0.080 4.080 16 C -0.190 4.190 17 C 0.039 3.961 18 N -0.373 5.373 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.583 5.583 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.004 4.004 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.186 0.814 36 H 0.190 0.810 37 H 0.141 0.859 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.074 0.926 44 H 0.093 0.907 45 H 0.066 0.934 46 H 0.039 0.961 47 H 0.037 0.963 48 H 0.219 0.781 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.267 23.265 -5.196 23.945 hybrid contribution 0.902 -2.018 0.181 2.218 sum -1.366 21.246 -5.014 21.873 Atomic orbital electron populations 1.21758 0.92793 1.02754 1.02397 1.19522 0.97099 0.95452 0.90667 1.21791 1.00800 0.94305 1.02810 1.23139 0.96106 0.88665 0.95673 1.70161 1.23096 1.28288 0.98906 1.22215 1.00917 0.94851 0.99505 1.22661 1.08742 1.04316 0.82503 1.44858 1.39446 1.22275 1.05863 1.21636 0.97297 0.96001 0.88916 1.20220 0.88539 0.81684 0.79676 1.90793 1.25752 1.67880 1.55295 1.48796 1.19069 1.38540 1.28476 1.22683 0.86224 0.99027 0.94952 1.22718 0.96715 0.92626 1.03647 1.21660 0.94311 0.95678 0.96387 1.21816 1.02246 1.01243 0.93728 1.20691 0.94611 0.86433 0.94316 1.42336 1.50842 1.05168 1.38966 1.19175 1.20524 0.85053 1.12340 0.91343 1.24707 0.99583 0.98146 0.98392 1.69628 1.30772 1.34087 1.23825 0.86274 0.77285 0.85013 0.77656 1.21308 1.21674 1.21254 1.22196 0.92493 0.88525 0.97221 0.92183 0.91418 0.92043 0.90745 0.91845 0.92837 0.91250 0.81362 0.81010 0.85894 0.86296 0.90470 0.90471 0.89414 0.90045 0.92587 0.90716 0.93402 0.96142 0.96347 0.78071 0.93455 0.91284 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.18 37.16 0.34 -1.05 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.09 9.18 37.16 0.34 -0.75 16 4 C 0.23 2.78 6.40 -155.42 -0.99 1.78 16 5 N -0.49 -6.69 11.25 -10.82 -0.12 -6.81 16 6 C -0.03 -0.34 11.87 -17.82 -0.21 -0.55 16 7 C -0.05 -0.57 11.58 -16.56 -0.19 -0.76 16 8 N -0.44 -5.01 2.24 -115.19 -0.26 -5.27 16 9 C 0.09 0.77 5.11 -5.19 -0.03 0.75 16 10 C 0.51 6.35 7.96 -10.99 -0.09 6.26 16 11 O -0.52 -8.79 16.76 5.56 0.09 -8.70 16 12 N -0.61 -7.05 3.29 -169.99 -0.56 -7.61 16 13 C 0.09 0.84 6.93 -2.32 -0.02 0.82 16 14 C -0.12 -1.49 5.72 -25.05 -0.14 -1.63 16 15 C -0.08 -1.13 0.67 -153.14 -0.10 -1.23 16 16 C -0.13 -1.82 8.05 37.16 0.30 -1.52 16 17 C 0.17 3.19 4.84 -4.04 -0.02 3.17 16 18 N -0.73 -17.25 5.12 -59.91 -0.31 -17.55 16 19 C -0.24 -6.50 9.99 -15.06 -0.15 -6.66 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 23 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.12 1.55 6.29 -2.99 -0.02 1.53 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.63 6.85 -51.93 -0.36 0.28 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.17 1.60 8.06 -52.48 -0.42 1.18 16 36 H 0.17 1.47 8.06 -52.49 -0.42 1.05 16 37 H 0.12 0.79 7.89 -51.93 -0.41 0.38 16 38 H 0.12 0.72 7.29 -51.93 -0.38 0.34 16 39 H 0.08 0.50 7.23 -51.93 -0.38 0.12 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 42 H 0.08 1.18 7.84 -51.92 -0.41 0.77 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.21 6.75 -51.93 -0.35 0.86 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.02 0.37 8.11 -51.93 -0.42 -0.05 16 48 H 0.38 9.36 6.18 -40.82 -0.25 9.10 16 49 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.07 0.84 7.68 -51.92 -0.40 0.44 16 51 H 0.08 1.18 7.59 -51.93 -0.39 0.79 16 LS Contribution 410.03 15.07 6.18 6.18 Total: -1.00 -34.42 410.03 -9.42 -43.84 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -8.77 Total: 6.02 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.38 Total: -0.64 kcal Atomic # 7 Polarization: -63.16 SS G_CDS: -0.52 Total: -63.68 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -34.42 -9.42 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484113763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.195 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds