Wall clock time and date at job start Tue Mar 31 2020 20:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30499 * 125.64940 * 59.69081 * 4 2 1 6 6 C 1.34122 * 109.25762 * 179.89641 * 5 4 2 7 7 C 1.34663 * 108.02300 * 0.36789 * 6 5 4 8 8 N 1.35039 * 125.65216 * 240.00171 * 4 2 1 9 9 C 1.46501 * 126.39902 * 359.97438 * 8 4 2 10 10 C 1.50704 * 109.46609 * 84.99982 * 9 8 4 11 11 O 1.21274 * 120.00266 * 0.02562 * 10 9 8 12 12 N 1.34773 * 119.99801 * 179.97438 * 10 9 8 13 13 C 1.48122 * 127.03717 * 359.68722 * 12 10 9 14 14 C 1.54588 * 103.42797 * 219.28362 * 13 12 10 15 15 C 1.54617 * 102.91405 * 322.87014 * 14 13 12 16 16 C 1.52999 * 110.32721 * 262.80587 * 15 14 13 17 17 C 1.52998 * 110.33206 * 140.58733 * 15 14 13 18 18 N 1.46496 * 109.47084 * 64.37879 * 17 15 14 19 19 C 1.36936 * 120.00392 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99345 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00147 * 179.97438 * 19 18 17 22 22 N 1.31615 * 120.00498 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99950 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47095 * 59.99977 * 23 21 19 25 25 H 1.48495 * 109.47314 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46875 * 300.00045 * 23 21 19 27 27 C 1.47485 * 127.03429 * 180.02562 * 12 10 9 28 28 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 30 30 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 31 31 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 35 35 H 1.08006 * 125.98831 * 180.11877 * 6 5 4 36 36 H 1.08001 * 126.59743 * 179.74667 * 7 6 5 37 37 H 1.08993 * 109.47586 * 204.99914 * 9 8 4 38 38 H 1.08994 * 109.47002 * 325.00875 * 9 8 4 39 39 H 1.08999 * 110.65527 * 337.77139 * 13 12 10 40 40 H 1.09001 * 110.65782 * 100.87788 * 13 12 10 41 41 H 1.08992 * 110.83790 * 204.44314 * 14 13 12 42 42 H 1.09008 * 110.72785 * 81.23715 * 14 13 12 43 43 H 1.08994 * 109.47331 * 175.61806 * 16 15 14 44 44 H 1.09003 * 109.47341 * 295.62116 * 16 15 14 45 45 H 1.09001 * 109.46831 * 55.61569 * 16 15 14 46 46 H 1.09001 * 109.47135 * 184.37626 * 17 15 14 47 47 H 1.09000 * 109.46936 * 304.37906 * 17 15 14 48 48 H 0.97008 * 119.99755 * 359.97438 * 18 17 15 49 49 H 0.96999 * 120.00650 * 179.97438 * 22 21 19 50 50 H 1.09008 * 109.91364 * 273.87923 * 27 12 10 51 51 H 1.09001 * 109.91678 * 35.15653 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7814 -0.3654 -2.4636 6 6 2.3923 -1.2218 -3.2956 7 6 3.0401 -2.1370 -2.5497 8 7 2.8120 -1.8130 -1.2394 9 6 3.3189 -2.5290 -0.0660 10 6 2.2797 -3.5106 0.4110 11 8 1.2203 -3.6034 -0.1721 12 7 2.5280 -4.2862 1.4848 13 6 3.7621 -4.3076 2.3037 14 6 3.9639 -5.8094 2.6097 15 6 2.5176 -6.3191 2.8073 16 6 2.1690 -6.3650 4.2964 17 6 2.3514 -7.7039 2.1785 18 7 3.2037 -8.6653 2.8824 19 6 3.2219 -9.9779 2.4927 20 1 2.6082 -10.3043 1.6661 21 6 4.0299 -10.8887 3.1594 22 7 4.7789 -10.4907 4.1658 23 14 4.0553 -12.6792 2.6273 24 1 4.5032 -12.7693 1.2143 25 1 4.9925 -13.4395 3.4925 26 1 2.6908 -13.2519 2.7516 27 6 1.6292 -5.2921 2.0810 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5137 0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 2.3658 -1.1864 -4.3748 36 1 3.6263 -2.9672 -2.9149 37 1 4.2296 -3.0650 -0.3328 38 1 3.5366 -1.8156 0.7288 39 1 4.6063 -3.9145 1.7371 40 1 3.6213 -3.7446 3.2263 41 1 4.5484 -5.9445 3.5197 42 1 4.4394 -6.3141 1.7686 43 1 1.1241 -6.6509 4.4163 44 1 2.8052 -7.0954 4.7962 45 1 2.3295 -5.3812 4.7375 46 1 1.3100 -8.0161 2.2571 47 1 2.6403 -7.6631 1.1283 48 1 3.7557 -8.3719 3.6242 49 1 5.3433 -11.1272 4.6319 50 1 0.9569 -4.8136 2.7932 51 1 1.0541 -5.7866 1.2982 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484113763.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:42 Heat of formation + Delta-G solvation = 15.299682 kcal Electronic energy + Delta-G solvation = -29475.077859 eV Core-core repulsion = 25602.839325 eV Total energy + Delta-G solvation = -3872.238533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.17954 -41.27151 -39.35326 -36.52493 -36.28311 -35.06289 -34.35667 -32.19558 -30.58511 -29.93781 -29.28726 -28.04495 -27.68594 -26.76303 -24.63118 -23.97392 -23.79209 -22.31750 -20.98885 -20.25179 -19.74485 -19.19940 -18.48607 -18.01686 -17.33989 -16.61001 -16.60496 -16.06512 -15.79421 -15.67886 -15.33602 -15.23730 -15.03540 -14.91551 -14.62318 -14.34632 -14.26497 -14.16805 -13.83943 -13.58894 -13.35883 -13.26550 -13.07213 -13.00797 -12.90612 -12.81157 -12.58787 -12.41085 -12.21202 -12.13187 -12.11361 -11.90477 -11.65607 -11.53050 -11.48069 -11.36523 -10.95421 -10.93964 -10.49801 -9.82692 -9.29403 -8.99790 -7.96671 -5.23923 0.93833 1.38535 1.46318 1.47776 1.54122 1.61240 2.04025 2.20043 2.54294 3.22730 3.36506 3.40078 3.60047 3.63763 3.66941 3.73889 3.82090 4.00609 4.11400 4.19657 4.21113 4.27522 4.33116 4.34079 4.41820 4.58144 4.61887 4.70204 4.72049 4.77024 4.79558 4.86697 4.89416 4.89855 4.95632 4.99881 5.05251 5.09218 5.19120 5.25588 5.26294 5.32852 5.39888 5.41571 5.47610 5.52282 5.83833 6.16658 6.26333 6.41689 6.93628 7.15259 7.34181 8.08376 8.35662 9.26023 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.021373 B = 0.002334 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.762793 B =11994.327522 C =12569.858828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.009 4.009 3 C -0.131 4.131 4 C 0.215 3.785 5 N -0.521 5.521 6 C -0.053 4.053 7 C -0.054 4.054 8 N -0.446 5.446 9 C 0.090 3.910 10 C 0.511 3.489 11 O -0.576 6.576 12 N -0.611 5.611 13 C 0.102 3.898 14 C -0.119 4.119 15 C -0.072 4.072 16 C -0.126 4.126 17 C 0.167 3.833 18 N -0.733 5.733 19 C -0.249 4.249 20 H 0.066 0.934 21 C -0.067 4.067 22 N -0.963 5.963 23 Si 0.967 3.033 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.124 3.876 28 H 0.031 0.969 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.182 0.818 36 H 0.196 0.804 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.010 0.990 47 H 0.005 0.995 48 H 0.381 0.619 49 H 0.253 0.747 50 H 0.085 0.915 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.033 24.449 -3.599 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.029 4.029 3 C -0.189 4.189 4 C -0.047 4.047 5 N -0.240 5.240 6 C -0.199 4.199 7 C -0.186 4.186 8 N -0.129 5.129 9 C -0.035 4.035 10 C 0.299 3.701 11 O -0.455 6.455 12 N -0.345 5.345 13 C -0.019 4.019 14 C -0.157 4.157 15 C -0.073 4.073 16 C -0.183 4.183 17 C 0.040 3.960 18 N -0.377 5.377 19 C -0.381 4.381 20 H 0.084 0.916 21 C -0.260 4.260 22 N -0.613 5.613 23 Si 0.797 3.203 24 H -0.207 1.207 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.001 3.999 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.199 0.801 36 H 0.213 0.787 37 H 0.171 0.829 38 H 0.174 0.826 39 H 0.132 0.868 40 H 0.126 0.874 41 H 0.108 0.892 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.028 0.972 47 H 0.023 0.977 48 H 0.215 0.785 49 H 0.061 0.939 50 H 0.103 0.897 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.006 24.904 -4.242 25.282 hybrid contribution 0.445 -2.555 -0.156 2.598 sum -0.561 22.348 -4.398 22.784 Atomic orbital electron populations 1.21700 0.93557 1.00966 1.02931 1.19685 0.96435 0.96530 0.90283 1.21735 1.01141 0.93014 1.03053 1.23635 0.95997 0.89090 0.96018 1.70120 1.24217 1.29630 1.00071 1.22619 1.01498 0.95352 1.00462 1.23093 1.08407 1.04432 0.82678 1.45038 1.39228 1.22070 1.06533 1.21933 0.96477 0.96012 0.89093 1.20887 0.88532 0.81759 0.78911 1.90782 1.28234 1.69616 1.56872 1.48842 1.19540 1.37632 1.28471 1.22872 0.86149 0.96411 0.96453 1.22663 0.94931 0.95323 1.02830 1.21509 0.96297 0.92954 0.96516 1.21744 1.01245 1.02425 0.92914 1.20770 0.92926 0.88658 0.93612 1.42434 1.51297 1.04927 1.39062 1.19506 1.19914 0.86720 1.11937 0.91631 1.25430 0.99832 1.01867 0.98857 1.69759 1.31613 1.35024 1.24895 0.85311 0.77202 0.80541 0.77285 1.20741 1.21797 1.20773 1.21990 0.92552 0.88762 0.96637 0.94998 0.92807 0.89574 0.88986 0.89654 0.92165 0.92917 0.80064 0.78739 0.82881 0.82615 0.86847 0.87395 0.89165 0.92494 0.93040 0.93540 0.89770 0.97228 0.97684 0.78534 0.93857 0.89680 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.18 71.98 0.66 -1.93 16 2 C -0.01 -0.16 3.25 -11.54 -0.04 -0.20 16 3 C -0.13 -1.76 9.18 71.98 0.66 -1.10 16 4 C 0.22 5.04 6.40 138.13 0.88 5.93 16 5 N -0.52 -14.37 11.25 -188.14 -2.12 -16.49 16 6 C -0.05 -1.28 11.87 83.52 0.99 -0.29 16 7 C -0.05 -1.14 11.58 83.08 0.96 -0.18 16 8 N -0.45 -9.22 2.24 -518.36 -1.16 -10.38 16 9 C 0.09 1.24 5.11 85.63 0.44 1.68 16 10 C 0.51 11.49 7.96 87.66 0.70 12.19 16 11 O -0.58 -19.23 16.76 -3.01 -0.05 -19.28 16 12 N -0.61 -12.35 3.29 -810.11 -2.67 -15.01 16 13 C 0.10 1.37 6.93 86.61 0.60 1.97 16 14 C -0.12 -2.74 5.72 31.69 0.18 -2.56 16 15 C -0.07 -1.97 0.67 -51.30 -0.03 -2.01 16 16 C -0.13 -3.27 8.05 71.98 0.58 -2.69 16 17 C 0.17 6.52 4.84 86.38 0.42 6.94 16 18 N -0.73 -35.42 5.12 -343.46 -1.76 -37.17 16 19 C -0.25 -13.70 9.99 84.03 0.84 -12.86 16 20 H 0.07 3.56 7.83 -2.91 -0.02 3.54 16 21 C -0.07 -3.75 5.50 84.86 0.47 -3.29 16 22 N -0.96 -56.50 13.06 21.65 0.28 -56.21 16 23 Si 0.97 45.45 29.55 68.60 2.03 47.48 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 26 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 27 C 0.12 3.10 6.29 86.53 0.54 3.64 16 28 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.09 1.25 6.85 -2.39 -0.02 1.24 16 32 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.18 3.50 8.06 -2.91 -0.02 3.47 16 36 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 37 H 0.15 1.22 7.89 -2.39 -0.02 1.20 16 38 H 0.16 1.01 7.29 -2.39 -0.02 0.99 16 39 H 0.11 0.79 7.23 -2.39 -0.02 0.77 16 40 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 2.06 7.85 -2.39 -0.02 2.04 16 42 H 0.06 1.60 7.84 -2.38 -0.02 1.58 16 43 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.05 1.49 6.75 -2.39 -0.02 1.47 16 45 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.01 0.22 8.11 -2.39 -0.02 0.20 16 48 H 0.38 18.86 6.18 -92.70 -0.57 18.29 16 49 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 50 H 0.09 1.88 7.68 -2.38 -0.02 1.86 16 51 H 0.05 1.57 7.59 -2.39 -0.02 1.55 16 Total: -1.00 -78.51 410.03 3.74 -74.77 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.33 Total: 27.05 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 8.85 Total: 5.25 kcal Atomic # 7 Polarization: -127.85 SS G_CDS: -7.42 Total: -135.27 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.05 Total: -19.28 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -78.51 3.74 -74.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484113763.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.070 kcal (2) G-P(sol) polarization free energy of solvation -78.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds