Wall clock time and date at job start Tue Mar 31 2020 18:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50698 * 109.47487 * 2 1 4 4 N 1.33318 * 126.10411 * 270.02682 * 3 2 1 5 5 C 1.30858 * 109.68401 * 179.97438 * 4 3 2 6 6 N 1.34498 * 109.16275 * 359.72676 * 5 4 3 7 7 H 0.97000 * 126.47049 * 180.29251 * 6 5 4 8 8 C 1.36659 * 126.10976 * 89.99604 * 3 2 1 9 9 C 1.46766 * 126.84167 * 0.02562 * 8 3 2 10 10 O 1.21683 * 120.00392 * 324.86254 * 9 8 3 11 11 N 1.34783 * 119.99844 * 144.86223 * 9 8 3 12 12 C 1.46931 * 120.62647 * 355.71319 * 11 9 8 13 13 C 1.53194 * 108.77156 * 233.58495 * 12 11 9 14 14 C 1.53036 * 109.31346 * 305.36616 * 13 12 11 15 15 C 1.53001 * 109.45966 * 181.38290 * 14 13 12 16 16 N 1.46505 * 109.46927 * 64.06240 * 15 14 13 17 17 C 1.36928 * 119.99877 * 263.86328 * 16 15 14 18 18 H 1.07995 * 120.00469 * 359.55920 * 17 16 15 19 19 C 1.38814 * 119.99908 * 179.55857 * 17 16 15 20 20 N 1.31617 * 120.00091 * 31.86607 * 19 17 16 21 21 Si 1.86802 * 120.00212 * 211.86274 * 19 17 16 22 22 H 1.48505 * 109.46839 * 94.98795 * 21 19 17 23 23 H 1.48495 * 109.47597 * 214.99213 * 21 19 17 24 24 H 1.48498 * 109.46963 * 334.99606 * 21 19 17 25 25 C 1.46506 * 119.99970 * 83.86271 * 16 15 14 26 26 C 1.52995 * 109.47137 * 85.46069 * 25 16 15 27 27 C 1.53043 * 109.53967 * 61.36905 * 14 13 12 28 28 C 1.46920 * 120.63233 * 175.69037 * 11 9 8 29 29 H 1.08995 * 109.47096 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46764 * 299.99899 * 1 2 3 31 31 H 1.09003 * 109.46879 * 59.99895 * 1 2 3 32 32 H 1.09004 * 109.47048 * 239.99840 * 2 1 3 33 33 H 1.09003 * 109.46879 * 120.00105 * 2 1 3 34 34 H 1.08005 * 125.41695 * 179.97438 * 5 4 3 35 35 H 1.08992 * 109.58869 * 353.37326 * 12 11 9 36 36 H 1.08996 * 109.58424 * 113.80299 * 12 11 9 37 37 H 1.09001 * 109.49474 * 65.31813 * 13 12 11 38 38 H 1.08997 * 109.49622 * 185.41905 * 13 12 11 39 39 H 1.09002 * 109.46406 * 301.34776 * 14 13 12 40 40 H 1.09000 * 109.47142 * 184.05786 * 15 14 13 41 41 H 1.08999 * 109.47615 * 304.06323 * 15 14 13 42 42 H 0.97001 * 120.00399 * 179.97438 * 20 19 17 43 43 H 1.09000 * 109.47069 * 205.46141 * 25 16 15 44 44 H 1.09001 * 109.46775 * 325.45838 * 25 16 15 45 45 H 1.09007 * 109.47159 * 302.15860 * 26 25 16 46 46 H 1.08994 * 109.47333 * 62.16313 * 26 25 16 47 47 H 1.09002 * 109.47025 * 182.16508 * 26 25 16 48 48 H 1.08998 * 109.50193 * 178.68246 * 27 14 13 49 49 H 1.09004 * 109.52507 * 58.59908 * 27 14 13 50 50 H 1.08999 * 109.58921 * 246.20377 * 28 11 9 51 51 H 1.09001 * 109.58386 * 6.48173 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2939 2.1616 -1.0771 5 6 2.7120 3.3451 -0.7072 6 7 2.7280 3.4077 0.6362 7 1 2.9917 4.1701 1.1748 8 6 2.3009 2.1801 1.1041 9 6 2.1578 1.7743 2.5072 10 8 1.2522 1.0312 2.8364 11 7 3.0296 2.2247 3.4312 12 6 4.1820 3.0458 3.0355 13 6 5.4578 2.4052 3.5912 14 6 5.3114 2.2142 5.1025 15 6 6.5972 1.6062 5.6664 16 7 7.7047 2.5472 5.4805 17 6 8.5343 2.4230 4.3983 18 1 8.3766 1.6271 3.6855 19 6 9.5780 3.3201 4.2172 20 7 10.1789 3.8500 5.2614 21 14 10.1297 3.7753 2.4916 22 1 9.4504 5.0263 2.0686 23 1 11.6001 3.9822 2.4803 24 1 9.7769 2.6792 1.5539 25 6 7.9245 3.6211 6.4526 26 6 8.7732 3.0942 7.6114 27 6 4.1362 1.2765 5.3885 28 6 2.8454 1.9043 4.8532 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 2.9951 4.1457 -1.3746 35 1 4.2407 3.0934 1.9482 36 1 4.0710 4.0511 3.4419 37 1 5.6156 1.4372 3.1157 38 1 6.3093 3.0544 3.3874 39 1 5.1289 3.1796 5.5747 40 1 6.4675 1.4034 6.7295 41 1 6.8192 0.6760 5.1434 42 1 10.9085 4.4766 5.1350 43 1 8.4436 4.4484 5.9688 44 1 6.9641 3.9680 6.8339 45 1 8.2718 2.2424 8.0710 46 1 9.7478 2.7828 7.2357 47 1 8.9045 3.8820 8.3531 48 1 4.0470 1.1223 6.4638 49 1 4.3062 0.3188 4.8965 50 1 2.6253 2.8165 5.4078 51 1 2.0205 1.2007 4.9653 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485033449.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:00 Heat of formation + Delta-G solvation = 44.654882 kcal Electronic energy + Delta-G solvation = -30290.522540 eV Core-core repulsion = 26419.556944 eV Total energy + Delta-G solvation = -3870.965596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -42.48326 -39.85340 -37.75097 -35.94312 -34.42649 -33.29137 -32.25461 -31.06550 -30.87759 -29.41684 -29.00306 -26.78503 -24.57847 -23.75725 -23.24097 -22.96791 -22.23594 -21.35896 -20.32727 -19.51858 -19.18436 -17.91842 -16.72911 -16.62800 -15.98252 -15.80978 -15.11340 -14.89943 -14.63386 -14.25992 -14.08259 -13.93306 -13.72929 -13.56346 -13.49958 -13.42709 -13.09247 -12.83662 -12.44120 -12.19010 -11.92848 -11.81322 -11.52195 -11.38192 -11.15195 -11.03028 -11.01325 -10.83802 -10.65511 -10.50091 -10.43274 -10.30911 -10.18505 -10.09013 -9.96766 -9.82805 -9.64912 -9.40452 -8.81230 -8.53155 -8.28078 -6.97571 -5.88405 -3.05542 1.24668 2.55218 2.70976 2.86179 3.24585 3.33226 3.43436 3.44683 4.23364 4.44403 4.45929 4.77924 4.85687 4.93229 5.01513 5.12495 5.18773 5.27248 5.34448 5.40495 5.41937 5.47140 5.55231 5.59797 5.63737 5.70405 5.80831 5.94072 6.03056 6.05327 6.11068 6.20101 6.25421 6.35572 6.41073 6.41934 6.49819 6.50873 6.60621 6.79176 6.88884 6.92167 6.98043 7.00717 7.09721 7.27314 7.65354 7.73772 7.75359 7.97207 8.01715 8.29593 9.17686 9.84631 10.30147 11.18297 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013875 B = 0.003426 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.490777 B = 8170.646541 C = 9570.489112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 C 0.089 3.911 4 N -0.496 5.496 5 C 0.213 3.787 6 N -0.554 5.554 7 H 0.425 0.575 8 C -0.080 4.080 9 C 0.593 3.407 10 O -0.528 6.528 11 N -0.603 5.603 12 C 0.093 3.907 13 C -0.117 4.117 14 C -0.104 4.104 15 C 0.159 3.841 16 N -0.598 5.598 17 C -0.249 4.249 18 H 0.075 0.925 19 C 0.002 3.998 20 N -0.886 5.886 21 Si 0.876 3.124 22 H -0.290 1.290 23 H -0.294 1.294 24 H -0.281 1.281 25 C 0.158 3.842 26 C -0.148 4.148 27 C -0.128 4.128 28 C 0.116 3.884 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.215 0.785 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.063 0.937 40 H 0.033 0.967 41 H 0.046 0.954 42 H 0.252 0.748 43 H 0.094 0.906 44 H 0.002 0.998 45 H 0.012 0.988 46 H 0.080 0.920 47 H 0.020 0.980 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.066 0.934 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 -0.030 -5.311 16.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.080 4.080 3 C -0.045 4.045 4 N -0.215 5.215 5 C -0.071 4.071 6 N -0.161 5.161 7 H 0.266 0.734 8 C -0.195 4.195 9 C 0.381 3.619 10 O -0.404 6.404 11 N -0.336 5.336 12 C -0.029 4.029 13 C -0.155 4.155 14 C -0.126 4.126 15 C 0.031 3.969 16 N -0.319 5.319 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.195 4.195 20 N -0.531 5.531 21 Si 0.706 3.294 22 H -0.218 1.218 23 H -0.221 1.221 24 H -0.206 1.206 25 C 0.033 3.967 26 C -0.207 4.207 27 C -0.167 4.167 28 C -0.006 4.006 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.112 0.888 44 H 0.020 0.980 45 H 0.031 0.969 46 H 0.099 0.901 47 H 0.039 0.961 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.084 0.916 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.070 -0.605 -5.898 17.128 hybrid contribution 0.890 1.234 0.146 1.528 sum -15.179 0.628 -5.751 16.244 Atomic orbital electron populations 1.21651 0.94192 1.01672 1.02216 1.19900 0.96424 0.88757 1.02925 1.20951 0.99742 0.97117 0.86647 1.70090 1.18338 1.02693 1.30396 1.25139 1.01864 0.97964 0.82150 1.43698 1.50271 1.13295 1.08818 0.73415 1.20846 1.14948 0.88631 0.95125 1.16931 0.81823 0.80517 0.82671 1.90806 1.33366 1.36348 1.79902 1.48128 1.25884 1.52040 1.07582 1.22159 0.86456 0.94324 0.99988 1.21871 0.95976 1.01814 0.95878 1.21785 0.96100 0.98930 0.95763 1.20687 0.86818 0.92398 0.97006 1.44196 1.29712 1.31489 1.26532 1.19217 1.08065 1.11416 0.98997 0.90692 1.24626 0.97043 1.01232 0.96612 1.70238 1.22251 1.33240 1.27347 0.86628 0.77396 0.78830 0.86593 1.21769 1.22144 1.20611 1.20991 0.93654 0.92603 0.89427 1.22209 1.03341 0.97498 0.97664 1.21951 0.94287 0.99603 1.00863 1.21648 0.99138 1.00603 0.79246 0.92409 0.91807 0.92973 0.90533 0.90294 0.76882 0.90557 0.91383 0.92339 0.87988 0.91809 0.94899 0.93583 0.93797 0.88765 0.98010 0.96880 0.90109 0.96065 0.90963 0.91721 0.91621 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.90 37.16 0.37 -1.20 16 2 C -0.04 -0.51 5.87 -27.88 -0.16 -0.68 16 3 C 0.09 1.20 6.39 -82.52 -0.53 0.68 16 4 N -0.50 -6.40 11.20 -10.64 -0.12 -6.52 16 5 C 0.21 2.03 13.01 -90.57 -1.18 0.85 16 6 N -0.55 -5.36 4.73 -10.79 -0.05 -5.41 16 7 H 0.43 3.04 7.46 -40.82 -0.30 2.73 16 8 C -0.08 -1.03 6.06 -82.15 -0.50 -1.53 16 9 C 0.59 8.36 7.39 -12.81 -0.09 8.26 16 10 O -0.53 -8.56 14.93 5.20 0.08 -8.48 16 11 N -0.60 -7.71 2.97 -174.28 -0.52 -8.23 16 12 C 0.09 1.14 5.55 -3.71 -0.02 1.12 16 13 C -0.12 -1.79 5.00 -26.61 -0.13 -1.92 16 14 C -0.10 -1.59 2.36 -90.58 -0.21 -1.80 16 15 C 0.16 2.94 5.16 -4.04 -0.02 2.92 16 16 N -0.60 -13.40 2.28 -173.24 -0.39 -13.80 16 17 C -0.25 -6.18 8.03 -15.06 -0.12 -6.30 16 18 H 0.08 1.87 7.96 -52.49 -0.42 1.46 16 19 C 0.00 0.06 4.87 -17.43 -0.08 -0.02 16 20 N -0.89 -23.65 8.99 55.49 0.50 -23.15 16 21 Si 0.88 20.28 29.66 -169.99 -5.04 15.24 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.16 3.56 5.65 -4.04 -0.02 3.54 16 26 C -0.15 -3.26 9.85 37.16 0.37 -2.89 16 27 C -0.13 -1.64 5.36 -26.61 -0.14 -1.79 16 28 C 0.12 1.41 6.44 -3.71 -0.02 1.38 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.81 7.56 -51.93 -0.39 0.42 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.02 7.53 -51.93 -0.39 0.63 16 34 H 0.21 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.08 0.86 4.70 -51.93 -0.24 0.62 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.10 1.84 6.57 -51.93 -0.34 1.50 16 39 H 0.06 1.01 8.00 -51.93 -0.42 0.60 16 40 H 0.03 0.60 8.11 -51.93 -0.42 0.17 16 41 H 0.05 0.88 7.96 -51.93 -0.41 0.47 16 42 H 0.25 6.61 8.31 -40.82 -0.34 6.27 16 43 H 0.09 2.38 5.55 -51.93 -0.29 2.09 16 44 H 0.00 0.03 7.96 -51.93 -0.41 -0.38 16 45 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 46 H 0.08 2.04 6.72 -51.93 -0.35 1.69 16 47 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 51 H 0.09 1.14 6.99 -51.93 -0.36 0.77 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -29.88 393.83 -10.66 -40.54 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.54 Total: 3.26 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -2.51 Total: 0.62 kcal Atomic # 7 Polarization: -56.53 SS G_CDS: -0.58 Total: -57.11 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.08 Total: -8.48 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.04 Total: 15.24 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.88 -10.66 -40.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485033449.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.195 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds