Wall clock time and date at job start Tue Mar 31 2020 19:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 C 1.50700 * 109.47610 * 120.00387 * 2 1 3 5 5 C 1.35364 * 126.38077 * 324.69101 * 4 2 1 6 6 C 1.41504 * 105.49799 * 179.86324 * 5 4 2 7 7 C 1.47713 * 126.51791 * 180.14556 * 6 5 4 8 8 O 1.21568 * 120.00095 * 352.90474 * 7 6 5 9 9 N 1.34776 * 120.00210 * 172.90063 * 7 6 5 10 10 C 1.46506 * 119.99701 * 3.71388 * 9 7 6 11 11 C 1.46497 * 120.00345 * 183.71371 * 9 7 6 12 12 H 1.09005 * 109.47024 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.47268 * 119.99934 * 11 9 7 14 14 N 1.46501 * 109.47081 * 304.99988 * 13 11 9 15 15 C 1.36938 * 119.99766 * 179.97438 * 14 13 11 16 16 H 1.07991 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99813 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00166 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47137 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47471 * 119.99566 * 19 17 15 22 22 H 1.48503 * 109.47454 * 239.99912 * 19 17 15 23 23 C 1.52993 * 109.47309 * 240.00085 * 11 9 7 24 24 C 1.53001 * 117.50303 * 248.74592 * 23 11 9 25 25 C 1.53000 * 117.50338 * 180.08542 * 23 11 9 26 26 N 1.31808 * 106.96605 * 0.40045 * 6 5 4 27 27 N 1.28465 * 110.07171 * 359.74973 * 26 6 5 28 28 C 1.46497 * 124.88665 * 180.02562 * 27 26 6 29 29 H 1.09009 * 109.47328 * 299.99172 * 1 2 3 30 30 H 1.09001 * 109.47465 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47881 * 59.99604 * 1 2 3 32 32 H 1.08999 * 109.46875 * 240.01109 * 2 1 3 33 33 H 1.09008 * 109.46995 * 60.00735 * 3 2 1 34 34 H 1.08997 * 109.47121 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47337 * 300.00551 * 3 2 1 36 36 H 1.07998 * 127.24968 * 359.97438 * 5 4 2 37 37 H 1.08997 * 109.46777 * 83.97910 * 10 9 7 38 38 H 1.09002 * 109.46740 * 203.97890 * 10 9 7 39 39 H 1.08991 * 109.47019 * 323.97393 * 10 9 7 40 40 H 1.09003 * 109.47121 * 65.00243 * 13 11 9 41 41 H 1.09004 * 109.46943 * 185.00564 * 13 11 9 42 42 H 0.97001 * 120.00155 * 359.97438 * 14 13 11 43 43 H 0.97005 * 120.00353 * 179.97438 * 18 17 15 44 44 H 1.09001 * 115.55099 * 34.41946 * 23 11 9 45 45 H 1.09005 * 117.49521 * 359.97438 * 24 23 11 46 46 H 1.08993 * 117.50069 * 145.01463 * 24 23 11 47 47 H 1.08998 * 117.50258 * 214.98121 * 25 23 11 48 48 H 1.09004 * 117.49531 * 359.97438 * 25 23 11 49 49 H 1.09003 * 109.47038 * 269.97358 * 28 27 26 50 50 H 1.08998 * 109.47530 * 29.96975 * 28 27 26 51 51 H 1.08999 * 109.47947 * 149.97230 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.4616 -0.6918 2.4577 6 6 2.2887 -1.5015 3.2717 7 6 2.0890 -1.8016 4.7041 8 8 1.2133 -1.2340 5.3277 9 7 2.8776 -2.7047 5.3198 10 6 3.9844 -3.3286 4.5904 11 6 2.6280 -3.0624 6.7184 12 1 1.7704 -2.5011 7.0895 13 6 2.3375 -4.5613 6.8174 14 7 1.2313 -4.9046 5.9203 15 6 0.7925 -6.1992 5.8389 16 1 1.2620 -6.9671 6.4356 17 6 -0.2553 -6.5246 4.9884 18 7 -0.8272 -5.5888 4.2608 19 14 -0.8545 -8.2904 4.8778 20 1 -0.0518 -9.1436 5.7906 21 1 -2.2851 -8.3533 5.2710 22 1 -0.7024 -8.7784 3.4835 23 6 3.8611 -2.7253 7.5589 24 6 4.6637 -3.8932 8.1359 25 6 3.7994 -3.0287 9.0572 26 7 3.2743 -1.9327 2.5100 27 7 3.1390 -1.4796 1.3155 28 6 4.0533 -1.7579 0.2052 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3635 0.5139 -0.8899 32 1 1.8932 -0.5137 -0.8901 33 1 1.6766 1.9564 0.8901 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 0.5631 -0.1703 2.7529 37 1 4.8563 -2.6754 4.6250 38 1 4.2290 -4.2859 5.0508 39 1 3.6913 -3.4888 3.5530 40 1 3.2262 -5.1234 6.5302 41 1 2.0648 -4.8115 7.8427 42 1 0.8098 -4.2149 5.3840 43 1 -1.5592 -5.8162 3.6662 44 1 4.4147 -1.8396 7.2472 45 1 4.3128 -4.9017 7.9171 46 1 5.7451 -3.7757 8.2041 47 1 4.3126 -2.3428 9.7312 48 1 2.8800 -3.4681 9.4442 49 1 4.8359 -0.9995 0.1803 50 1 4.5040 -2.7406 0.3433 51 1 3.5005 -1.7404 -0.7340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485812381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:48 Heat of formation + Delta-G solvation = 94.241401 kcal Electronic energy + Delta-G solvation = -30251.579719 eV Core-core repulsion = 26382.764355 eV Total energy + Delta-G solvation = -3868.815364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.55913 -39.53212 -37.51967 -35.87981 -34.81416 -33.91379 -33.29456 -31.03989 -29.58607 -28.37387 -27.33354 -27.09866 -26.17267 -24.39043 -23.04767 -22.51754 -22.20672 -21.78370 -20.12443 -19.26232 -18.36072 -17.03411 -16.99374 -16.40112 -16.14228 -16.04635 -14.96994 -14.88050 -14.62671 -14.36120 -14.01566 -13.86167 -13.78580 -13.30332 -13.21924 -13.12890 -12.82948 -12.74321 -12.59085 -12.38648 -12.33856 -12.06152 -11.84482 -11.71157 -11.41142 -11.36780 -11.19675 -11.03169 -10.96475 -10.76008 -10.66083 -10.27992 -10.21022 -9.99889 -9.68225 -9.62811 -9.42057 -8.87293 -8.79341 -8.73089 -8.04845 -6.81386 -5.65609 -2.94880 1.88725 2.34504 2.55793 3.41246 3.47516 3.52437 3.55092 3.89926 4.09125 4.33915 4.44783 4.64155 4.65271 4.86015 4.94736 4.97801 4.99315 5.12038 5.17421 5.23607 5.26893 5.37624 5.44357 5.49083 5.63950 5.64217 5.65212 5.71022 5.81241 5.83894 5.89671 5.92268 5.93763 6.01520 6.06084 6.07698 6.13853 6.24707 6.34707 6.37320 6.39666 6.49121 6.59760 6.68353 6.80886 6.92329 7.18946 7.76873 7.88640 8.13619 8.51305 8.71869 9.62755 10.22385 10.57738 11.56438 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.004263 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.219692 B = 6566.994119 C = 8643.335922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.022 4.022 3 C -0.142 4.142 4 C 0.013 3.987 5 C -0.169 4.169 6 C 0.002 3.998 7 C 0.605 3.395 8 O -0.537 6.537 9 N -0.581 5.581 10 C 0.086 3.914 11 C 0.161 3.839 12 H 0.104 0.896 13 C 0.144 3.856 14 N -0.727 5.727 15 C -0.238 4.238 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.927 5.927 19 Si 0.904 3.096 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.293 1.293 23 C -0.156 4.156 24 C -0.184 4.184 25 C -0.174 4.174 26 N -0.257 5.257 27 N -0.288 5.288 28 C 0.087 3.913 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.158 0.842 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.091 0.909 40 H 0.026 0.974 41 H 0.028 0.972 42 H 0.386 0.614 43 H 0.253 0.747 44 H 0.102 0.898 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.096 0.904 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.704 12.846 -8.174 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.042 4.042 3 C -0.200 4.200 4 C -0.111 4.111 5 C -0.197 4.197 6 C -0.157 4.157 7 C 0.391 3.609 8 O -0.412 6.412 9 N -0.312 5.312 10 C -0.057 4.057 11 C 0.058 3.942 12 H 0.122 0.878 13 C 0.015 3.985 14 N -0.371 5.371 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.209 4.209 18 N -0.575 5.575 19 Si 0.735 3.265 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.221 1.221 23 C -0.175 4.175 24 C -0.220 4.220 25 C -0.211 4.211 26 N -0.092 5.092 27 N -0.076 5.076 28 C -0.053 4.053 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.176 0.824 37 H 0.062 0.938 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.046 0.954 42 H 0.221 0.779 43 H 0.063 0.937 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.116 0.884 49 H 0.099 0.901 50 H 0.114 0.886 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.282 12.271 -7.886 19.728 hybrid contribution -1.049 -0.499 -0.416 1.234 sum 12.233 11.773 -8.303 18.899 Atomic orbital electron populations 1.21838 0.93011 1.02980 1.02424 1.19633 0.96855 0.95168 0.92509 1.21842 1.00824 0.94810 1.02540 1.21261 0.91333 1.00607 0.97913 1.21405 1.02758 1.04424 0.91120 1.21841 0.95794 1.02875 0.95233 1.16909 0.80981 0.79178 0.83793 1.90758 1.33306 1.51938 1.65189 1.47406 1.30963 1.40855 1.11947 1.21923 0.88045 0.97306 0.98419 1.20855 0.96367 0.97450 0.79532 0.87806 1.21119 0.91942 0.90918 0.94500 1.42317 1.37543 1.08037 1.49251 1.19234 1.12371 0.85752 1.19587 0.91280 1.24738 0.99141 0.97326 0.99696 1.69713 1.26713 1.31225 1.29887 0.86163 0.78447 0.84719 0.77140 1.20611 1.21911 1.22054 1.22565 0.99782 0.99961 0.95232 1.23183 0.97527 0.97120 1.04208 1.22952 1.02488 1.03421 0.92249 1.73750 1.24338 1.19847 0.91277 1.45371 1.19332 1.34775 1.08079 1.22073 0.92852 1.04037 0.86377 0.91659 0.91843 0.92005 0.90424 0.91832 0.92896 0.91916 0.82419 0.93752 0.91268 0.89132 0.95631 0.95439 0.77943 0.93710 0.87963 0.87542 0.89360 0.89125 0.88367 0.90099 0.88554 0.89067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.79 37.15 0.33 -1.05 16 2 C -0.02 -0.20 3.09 -91.77 -0.28 -0.49 16 3 C -0.14 -1.11 9.18 37.16 0.34 -0.76 16 4 C 0.01 0.17 5.84 -82.21 -0.48 -0.31 16 5 C -0.17 -2.82 9.97 -39.36 -0.39 -3.21 16 6 C 0.00 0.04 6.81 -82.76 -0.56 -0.52 16 7 C 0.60 12.80 7.38 -12.39 -0.09 12.71 16 8 O -0.54 -12.75 16.27 5.31 0.09 -12.66 16 9 N -0.58 -11.18 2.24 -175.10 -0.39 -11.57 16 10 C 0.09 1.46 8.95 59.85 0.54 1.99 16 11 C 0.16 3.06 2.58 -67.94 -0.18 2.88 16 12 H 0.10 2.22 6.90 -51.93 -0.36 1.86 16 13 C 0.14 3.05 4.15 -4.04 -0.02 3.04 16 14 N -0.73 -19.64 5.43 -59.91 -0.33 -19.97 16 15 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 16 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 18 N -0.93 -29.48 13.06 55.49 0.72 -28.75 16 19 Si 0.90 23.14 29.55 -169.99 -5.02 18.12 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 22 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 23 C -0.16 -2.33 5.48 -90.62 -0.50 -2.82 16 24 C -0.18 -2.41 9.59 -26.69 -0.26 -2.67 16 25 C -0.17 -2.27 9.94 -26.70 -0.27 -2.54 16 26 N -0.26 -4.23 8.52 33.42 0.28 -3.94 16 27 N -0.29 -3.82 3.70 -63.85 -0.24 -4.05 16 28 C 0.09 0.69 11.11 59.85 0.66 1.35 16 29 H 0.06 0.65 7.36 -51.92 -0.38 0.27 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.59 6.86 -51.93 -0.36 0.23 16 33 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.16 2.55 7.48 -52.49 -0.39 2.16 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 39 H 0.09 1.64 5.38 -51.93 -0.28 1.36 16 40 H 0.03 0.54 5.33 -51.93 -0.28 0.26 16 41 H 0.03 0.59 7.44 -51.93 -0.39 0.20 16 42 H 0.39 11.42 7.07 -40.82 -0.29 11.13 16 43 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 44 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.11 1.52 5.80 -51.93 -0.30 1.22 16 46 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.10 1.35 7.66 -51.93 -0.40 0.95 16 49 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.09 0.52 6.88 -51.93 -0.36 0.16 16 LS Contribution 404.82 15.07 6.10 6.10 Total: -1.00 -36.21 404.82 -8.49 -44.70 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: -8.31 Total: 12.00 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.40 Total: 0.03 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: 0.05 Total: -68.28 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.09 Total: -12.66 kcal Atomic # 14 Polarization: 23.14 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.21 -8.49 -44.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485812381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.940 kcal (2) G-P(sol) polarization free energy of solvation -36.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds