Wall clock time and date at job start Tue Mar 31 2020 19:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.46997 * 2 1 4 4 C 1.50700 * 109.47610 * 120.00387 * 2 1 3 5 5 C 1.35364 * 126.38077 * 324.69101 * 4 2 1 6 6 C 1.41504 * 105.49799 * 179.86324 * 5 4 2 7 7 C 1.47713 * 126.51791 * 180.14556 * 6 5 4 8 8 O 1.21568 * 120.00095 * 352.90474 * 7 6 5 9 9 N 1.34776 * 120.00210 * 172.90063 * 7 6 5 10 10 C 1.46506 * 119.99701 * 3.71388 * 9 7 6 11 11 C 1.46497 * 120.00345 * 183.71371 * 9 7 6 12 12 H 1.09005 * 109.47024 * 0.02562 * 11 9 7 13 13 C 1.52999 * 109.47268 * 119.99934 * 11 9 7 14 14 N 1.46501 * 109.47081 * 304.99988 * 13 11 9 15 15 C 1.36938 * 119.99766 * 179.97438 * 14 13 11 16 16 H 1.07991 * 120.00308 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99813 * 180.02562 * 15 14 13 18 18 N 1.31618 * 119.99967 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00166 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47137 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47471 * 119.99566 * 19 17 15 22 22 H 1.48503 * 109.47454 * 239.99912 * 19 17 15 23 23 C 1.52993 * 109.47309 * 240.00085 * 11 9 7 24 24 C 1.53001 * 117.50303 * 248.74592 * 23 11 9 25 25 C 1.53000 * 117.50338 * 180.08542 * 23 11 9 26 26 N 1.31808 * 106.96605 * 0.40045 * 6 5 4 27 27 N 1.28465 * 110.07171 * 359.74973 * 26 6 5 28 28 C 1.46497 * 124.88665 * 180.02562 * 27 26 6 29 29 H 1.09009 * 109.47328 * 299.99172 * 1 2 3 30 30 H 1.09001 * 109.47465 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47881 * 59.99604 * 1 2 3 32 32 H 1.08999 * 109.46875 * 240.01109 * 2 1 3 33 33 H 1.09008 * 109.46995 * 60.00735 * 3 2 1 34 34 H 1.08997 * 109.47121 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47337 * 300.00551 * 3 2 1 36 36 H 1.07998 * 127.24968 * 359.97438 * 5 4 2 37 37 H 1.08997 * 109.46777 * 83.97910 * 10 9 7 38 38 H 1.09002 * 109.46740 * 203.97890 * 10 9 7 39 39 H 1.08991 * 109.47019 * 323.97393 * 10 9 7 40 40 H 1.09003 * 109.47121 * 65.00243 * 13 11 9 41 41 H 1.09004 * 109.46943 * 185.00564 * 13 11 9 42 42 H 0.97001 * 120.00155 * 359.97438 * 14 13 11 43 43 H 0.97005 * 120.00353 * 179.97438 * 18 17 15 44 44 H 1.09001 * 115.55099 * 34.41946 * 23 11 9 45 45 H 1.09005 * 117.49521 * 359.97438 * 24 23 11 46 46 H 1.08993 * 117.50069 * 145.01463 * 24 23 11 47 47 H 1.08998 * 117.50258 * 214.98121 * 25 23 11 48 48 H 1.09004 * 117.49531 * 359.97438 * 25 23 11 49 49 H 1.09003 * 109.47038 * 269.97358 * 28 27 26 50 50 H 1.08998 * 109.47530 * 29.96975 * 28 27 26 51 51 H 1.08999 * 109.47947 * 149.97230 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.4616 -0.6918 2.4577 6 6 2.2887 -1.5015 3.2717 7 6 2.0890 -1.8016 4.7041 8 8 1.2133 -1.2340 5.3277 9 7 2.8776 -2.7047 5.3198 10 6 3.9844 -3.3286 4.5904 11 6 2.6280 -3.0624 6.7184 12 1 1.7704 -2.5011 7.0895 13 6 2.3375 -4.5613 6.8174 14 7 1.2313 -4.9046 5.9203 15 6 0.7925 -6.1992 5.8389 16 1 1.2620 -6.9671 6.4356 17 6 -0.2553 -6.5246 4.9884 18 7 -0.8272 -5.5888 4.2608 19 14 -0.8545 -8.2904 4.8778 20 1 -0.0518 -9.1436 5.7906 21 1 -2.2851 -8.3533 5.2710 22 1 -0.7024 -8.7784 3.4835 23 6 3.8611 -2.7253 7.5589 24 6 4.6637 -3.8932 8.1359 25 6 3.7994 -3.0287 9.0572 26 7 3.2743 -1.9327 2.5100 27 7 3.1390 -1.4796 1.3155 28 6 4.0533 -1.7579 0.2052 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3635 0.5139 -0.8899 32 1 1.8932 -0.5137 -0.8901 33 1 1.6766 1.9564 0.8901 34 1 3.1299 1.4426 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 0.5631 -0.1703 2.7529 37 1 4.8563 -2.6754 4.6250 38 1 4.2290 -4.2859 5.0508 39 1 3.6913 -3.4888 3.5530 40 1 3.2262 -5.1234 6.5302 41 1 2.0648 -4.8115 7.8427 42 1 0.8098 -4.2149 5.3840 43 1 -1.5592 -5.8162 3.6662 44 1 4.4147 -1.8396 7.2472 45 1 4.3128 -4.9017 7.9171 46 1 5.7451 -3.7757 8.2041 47 1 4.3126 -2.3428 9.7312 48 1 2.8800 -3.4681 9.4442 49 1 4.8359 -0.9995 0.1803 50 1 4.5040 -2.7406 0.3433 51 1 3.5005 -1.7404 -0.7340 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485812381.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:38:46 Heat of formation + Delta-G solvation = 71.063513 kcal Electronic energy + Delta-G solvation = -30252.584787 eV Core-core repulsion = 26382.764355 eV Total energy + Delta-G solvation = -3869.820432 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.72476 -41.04791 -38.94531 -36.75094 -36.40685 -35.76102 -34.38944 -33.08012 -30.75789 -29.91495 -28.27505 -28.02908 -27.67779 -26.17118 -24.41580 -23.91067 -23.29179 -23.07432 -21.30243 -20.53163 -19.85944 -19.07232 -18.16034 -17.74086 -17.46232 -17.31709 -16.57577 -16.35324 -16.09465 -15.49930 -15.29495 -15.10421 -14.96687 -14.78366 -14.68122 -14.62729 -14.01054 -13.90315 -13.68085 -13.53538 -13.38324 -13.28875 -13.08629 -12.96468 -12.93494 -12.76992 -12.54625 -12.33684 -12.23353 -12.10867 -11.99286 -11.77947 -11.77241 -11.53635 -11.43295 -11.06194 -11.00464 -10.79127 -10.07291 -9.89651 -9.55275 -9.02434 -7.94353 -5.25656 0.56145 1.13052 1.42935 1.45409 1.55439 1.56607 2.00743 2.40012 2.53381 2.93847 3.26539 3.38010 3.53069 3.64529 3.79350 3.91192 4.04429 4.07287 4.14490 4.18691 4.23083 4.32628 4.35136 4.41250 4.45838 4.49684 4.61617 4.63348 4.68222 4.72651 4.77845 4.81991 4.82459 4.89874 4.98241 4.99345 5.00748 5.05026 5.13111 5.15187 5.22763 5.33137 5.33734 5.38453 5.43285 5.45836 5.65488 5.93138 6.24050 6.37411 6.87793 7.17279 7.30020 8.05024 8.29598 9.29093 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008701 B = 0.004263 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3217.219692 B = 6566.994119 C = 8643.335922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.018 4.018 3 C -0.138 4.138 4 C 0.032 3.968 5 C -0.203 4.203 6 C -0.038 4.038 7 C 0.592 3.408 8 O -0.582 6.582 9 N -0.580 5.580 10 C 0.092 3.908 11 C 0.167 3.833 12 H 0.069 0.931 13 C 0.147 3.853 14 N -0.743 5.743 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.977 3.023 20 H -0.261 1.261 21 H -0.295 1.295 22 H -0.293 1.293 23 C -0.167 4.167 24 C -0.167 4.167 25 C -0.165 4.165 26 N -0.260 5.260 27 N -0.278 5.278 28 C 0.072 3.928 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.090 0.910 32 H 0.108 0.892 33 H 0.046 0.954 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.146 0.854 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.032 0.968 42 H 0.369 0.631 43 H 0.249 0.751 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.117 0.883 48 H 0.087 0.913 49 H 0.109 0.891 50 H 0.100 0.900 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.410 12.398 -9.642 22.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 C -0.195 4.195 4 C -0.093 4.093 5 C -0.232 4.232 6 C -0.196 4.196 7 C 0.380 3.620 8 O -0.462 6.462 9 N -0.309 5.309 10 C -0.050 4.050 11 C 0.063 3.937 12 H 0.087 0.913 13 C 0.020 3.980 14 N -0.385 5.385 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.222 1.222 22 H -0.220 1.220 23 C -0.187 4.187 24 C -0.203 4.203 25 C -0.202 4.202 26 N -0.097 5.097 27 N -0.067 5.067 28 C -0.067 4.067 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.126 0.874 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.164 0.836 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.200 0.800 43 H 0.057 0.943 44 H 0.129 0.871 45 H 0.113 0.887 46 H 0.135 0.865 47 H 0.135 0.865 48 H 0.105 0.895 49 H 0.127 0.873 50 H 0.119 0.881 51 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.067 11.789 -9.322 22.001 hybrid contribution -1.829 -0.333 -0.010 1.859 sum 14.238 11.456 -9.331 20.519 Atomic orbital electron populations 1.21857 0.93479 1.01873 1.03177 1.19848 0.96415 0.96144 0.91416 1.21815 1.01320 0.93368 1.03031 1.21766 0.90314 0.99187 0.98033 1.21504 1.03258 1.05607 0.92787 1.21677 0.97930 1.05312 0.94675 1.17397 0.80537 0.79135 0.84908 1.90700 1.35184 1.53815 1.66456 1.47523 1.31028 1.40246 1.12148 1.21960 0.87963 0.97684 0.97395 1.20693 0.97466 0.95195 0.80316 0.91287 1.21269 0.90559 0.92784 0.93378 1.42553 1.38899 1.07106 1.49924 1.19691 1.12073 0.86757 1.18951 0.90170 1.25651 0.99719 1.01766 0.99818 1.69917 1.27450 1.33656 1.31092 0.85019 0.77551 0.79624 0.77219 1.18542 1.22239 1.21976 1.22365 0.98709 1.01554 0.96050 1.23219 0.98955 0.95551 1.02594 1.23057 1.02345 1.03509 0.91318 1.73644 1.23661 1.19925 0.92432 1.45933 1.19581 1.33063 1.08077 1.22631 0.93186 1.05329 0.85506 0.93079 0.93873 0.89131 0.87375 0.93436 0.92051 0.89378 0.83613 0.91122 0.91198 0.90316 0.94086 0.95031 0.79974 0.94267 0.87115 0.88746 0.86469 0.86461 0.89464 0.87257 0.88102 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.79 71.98 0.63 -2.06 16 2 C -0.02 -0.31 3.09 -11.54 -0.04 -0.34 16 3 C -0.14 -1.79 9.18 71.98 0.66 -1.13 16 4 C 0.03 0.85 5.84 41.40 0.24 1.09 16 5 C -0.20 -7.25 9.97 22.41 0.22 -7.02 16 6 C -0.04 -1.54 6.81 42.46 0.29 -1.25 16 7 C 0.59 27.00 7.38 86.75 0.64 27.64 16 8 O -0.58 -30.39 16.27 -3.93 -0.06 -30.46 16 9 N -0.58 -23.35 2.24 -826.17 -1.85 -25.20 16 10 C 0.09 3.13 8.95 127.77 1.14 4.28 16 11 C 0.17 6.58 2.58 44.99 0.12 6.70 16 12 H 0.07 3.19 6.90 -2.38 -0.02 3.18 16 13 C 0.15 6.38 4.15 86.38 0.36 6.74 16 14 N -0.74 -41.54 5.43 -343.45 -1.87 -43.41 16 15 C -0.24 -14.36 9.99 84.03 0.84 -13.52 16 16 H 0.08 4.46 7.83 -2.92 -0.02 4.44 16 17 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 18 N -0.97 -63.99 13.06 21.65 0.28 -63.71 16 19 Si 0.98 48.23 29.55 68.60 2.03 50.25 16 20 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 22 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 23 C -0.17 -4.88 5.48 -10.80 -0.06 -4.94 16 24 C -0.17 -3.99 9.59 30.62 0.29 -3.69 16 25 C -0.16 -4.05 9.94 30.62 0.30 -3.75 16 26 N -0.26 -8.64 8.52 -48.17 -0.41 -9.05 16 27 N -0.28 -7.06 3.70 -355.93 -1.32 -8.38 16 28 C 0.07 0.90 11.11 127.77 1.42 2.32 16 29 H 0.05 1.07 7.36 -2.38 -0.02 1.06 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.19 6.86 -2.39 -0.02 1.18 16 33 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.15 5.32 7.48 -2.91 -0.02 5.29 16 37 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.07 2.31 6.54 -2.39 -0.02 2.30 16 39 H 0.08 2.90 5.38 -2.39 -0.01 2.88 16 40 H 0.04 1.69 5.33 -2.39 -0.01 1.67 16 41 H 0.03 1.36 7.44 -2.38 -0.02 1.34 16 42 H 0.37 23.08 7.07 -92.71 -0.65 22.43 16 43 H 0.25 15.81 8.31 -92.70 -0.77 15.04 16 44 H 0.11 3.08 8.14 -2.39 -0.02 3.07 16 45 H 0.09 2.52 5.80 -2.38 -0.01 2.50 16 46 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.09 2.35 7.66 -2.38 -0.02 2.33 16 49 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.12 0.84 6.88 -2.39 -0.02 0.82 16 Total: -1.00 -84.25 404.82 4.61 -79.64 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: 0.28 Total: 43.50 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 7.53 Total: 6.81 kcal Atomic # 7 Polarization: -144.59 SS G_CDS: -5.16 Total: -149.75 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.06 Total: -30.46 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.25 kcal Total: -84.25 4.61 -79.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485812381.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.705 kcal (2) G-P(sol) polarization free energy of solvation -84.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds