Wall clock time and date at job start Tue Mar 31 2020 18:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50699 * 109.47076 * 2 1 4 4 C 1.34667 * 126.59281 * 275.03653 * 3 2 1 5 5 N 1.34128 * 108.02334 * 179.74348 * 4 3 2 6 6 C 1.30500 * 109.25557 * 0.37667 * 5 4 3 7 7 C 1.50699 * 125.65319 * 179.88883 * 6 5 4 8 8 C 1.50705 * 109.47167 * 304.69482 * 7 6 5 9 9 O 1.21280 * 119.99656 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00210 * 179.97438 * 8 7 6 11 11 C 1.46936 * 120.60372 * 5.84860 * 10 8 7 12 12 C 1.53194 * 108.77094 * 233.53232 * 11 10 8 13 13 C 1.53043 * 109.33517 * 305.41064 * 12 11 10 14 14 C 1.53043 * 109.53872 * 61.35093 * 13 12 11 15 15 C 1.46919 * 120.63419 * 185.81668 * 10 8 7 16 16 H 1.09000 * 109.59134 * 246.22567 * 15 10 8 17 17 C 1.53002 * 109.70272 * 6.58230 * 15 10 8 18 18 H 1.09002 * 109.47043 * 301.92674 * 17 15 10 19 19 C 1.53002 * 109.47159 * 181.92546 * 17 15 10 20 20 N 1.46506 * 109.46948 * 61.92421 * 17 15 10 21 21 C 1.36942 * 119.99682 * 204.99993 * 20 17 15 22 22 H 1.07998 * 120.00079 * 0.02562 * 21 20 17 23 23 C 1.38813 * 119.99711 * 180.02562 * 21 20 17 24 24 N 1.31615 * 119.99901 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00017 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47400 * 89.99452 * 25 23 21 27 27 H 1.48500 * 109.46991 * 210.00018 * 25 23 21 28 28 H 1.48502 * 109.46870 * 329.99529 * 25 23 21 29 29 N 1.35042 * 108.69837 * 359.62896 * 6 5 4 30 30 H 0.97003 * 126.40049 * 180.25313 * 29 6 5 31 31 H 1.09001 * 109.47561 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.47181 * 300.00004 * 1 2 3 33 33 H 1.09002 * 109.47364 * 59.99835 * 1 2 3 34 34 H 1.08998 * 109.47169 * 239.99947 * 2 1 3 35 35 H 1.09006 * 109.47094 * 119.99739 * 2 1 3 36 36 H 1.08004 * 125.99059 * 359.93699 * 4 3 2 37 37 H 1.08997 * 109.47486 * 184.69244 * 7 6 5 38 38 H 1.09004 * 109.47085 * 64.68826 * 7 6 5 39 39 H 1.08997 * 109.56321 * 113.75802 * 11 10 8 40 40 H 1.09006 * 109.61630 * 353.33183 * 11 10 8 41 41 H 1.09000 * 109.49741 * 185.44588 * 12 11 10 42 42 H 1.08997 * 109.49934 * 65.37483 * 12 11 10 43 43 H 1.09002 * 109.45957 * 181.37168 * 13 12 11 44 44 H 1.08996 * 109.45939 * 301.33120 * 13 12 11 45 45 H 1.08994 * 109.49628 * 58.58482 * 14 13 12 46 46 H 1.09000 * 109.49632 * 178.68403 * 14 13 12 47 47 H 1.08993 * 109.47107 * 64.83413 * 19 17 15 48 48 H 1.09008 * 109.46741 * 184.83329 * 19 17 15 49 49 H 1.08998 * 109.47037 * 304.82447 * 19 17 15 50 50 H 0.96994 * 119.99992 * 24.99996 * 20 17 15 51 51 H 0.96998 * 119.99826 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2104 2.2093 -1.0771 5 7 2.6642 3.3974 -0.6511 6 6 2.7817 3.3725 0.6484 7 6 3.2633 4.5121 1.5088 8 6 4.6180 4.9661 1.0291 9 8 5.1409 4.4178 0.0821 10 7 5.2482 5.9812 1.6525 11 6 4.6883 6.5702 2.8767 12 6 4.5640 8.0848 2.6828 13 6 5.9235 8.6566 2.2742 14 6 6.3626 8.0341 0.9468 15 6 6.5080 6.5191 1.1213 16 1 7.3185 6.3078 1.8188 17 6 6.8144 5.8741 -0.2318 18 1 6.8724 4.7921 -0.1137 19 6 8.1508 6.4021 -0.7575 20 7 5.7503 6.2053 -1.1828 21 6 5.5056 5.3829 -2.2501 22 1 6.0968 4.4901 -2.3906 23 6 4.4977 5.6969 -3.1515 24 7 3.7770 6.7847 -2.9800 25 14 4.1634 4.5748 -4.6070 26 1 3.1594 3.5506 -4.2221 27 1 3.6413 5.3781 -5.7416 28 1 5.4240 3.9037 -5.0144 29 7 2.3947 2.1582 1.0949 30 1 2.3764 1.8636 2.0189 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8901 36 1 2.0182 1.9344 -2.1037 37 1 3.3372 4.1796 2.5442 38 1 2.5581 5.3406 1.4426 39 1 5.3502 6.3625 3.7174 40 1 3.7037 6.1446 3.0704 41 1 4.2411 8.5457 3.6162 42 1 3.8323 8.2928 1.9021 43 1 5.8431 9.7376 2.1594 44 1 6.6601 8.4272 3.0441 45 1 5.6141 8.2421 0.1823 46 1 7.3198 8.4591 0.6447 47 1 8.9542 6.0821 -0.0941 48 1 8.3281 6.0093 -1.7588 49 1 8.1219 7.4911 -0.7945 50 1 5.2191 7.0069 -1.0564 51 1 3.0729 7.0044 -3.6100 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490293829.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:47 Heat of formation + Delta-G solvation = 42.698135 kcal Electronic energy + Delta-G solvation = -31463.254666 eV Core-core repulsion = 27592.204219 eV Total energy + Delta-G solvation = -3871.050447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 4.46 seconds Orbital eigenvalues (eV) -42.97868 -41.26937 -38.08328 -36.81007 -35.01997 -34.08793 -33.58758 -33.25258 -31.83637 -31.09560 -29.57723 -28.07331 -25.96299 -25.50391 -24.53929 -24.16039 -22.32505 -21.79632 -21.55170 -20.92676 -19.54171 -18.91622 -18.22411 -17.53898 -16.79375 -16.27192 -16.22708 -15.81047 -15.60845 -15.45774 -15.36393 -15.12854 -14.81412 -14.56051 -14.46145 -14.38193 -14.04674 -13.87181 -13.70186 -13.48482 -13.24133 -13.15457 -12.96502 -12.76596 -12.67043 -12.58625 -12.41541 -12.22755 -12.09966 -12.02144 -11.86848 -11.61965 -11.46675 -11.28740 -11.16600 -10.80304 -10.68613 -10.46885 -9.52772 -9.20151 -9.07123 -8.49777 -7.65750 -4.80365 1.11254 1.39552 1.48939 1.50570 1.99611 2.23870 2.32032 2.60783 2.76218 3.54328 3.74086 3.80616 3.95316 4.03262 4.07922 4.10381 4.17461 4.17960 4.26688 4.38121 4.42066 4.45378 4.46497 4.51840 4.62165 4.71637 4.75166 4.79734 4.81793 4.92111 4.95866 4.98822 5.01737 5.04051 5.10022 5.17773 5.22450 5.32791 5.33690 5.39046 5.44348 5.52162 5.62921 5.68435 5.77129 5.89597 6.07678 6.57507 6.65051 6.88165 7.44681 7.66464 7.85141 8.43194 8.67229 9.59856 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.005417 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.608603 B = 5167.676608 C = 7110.954105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.040 4.040 3 C -0.002 4.002 4 C -0.074 4.074 5 N -0.487 5.487 6 C 0.206 3.794 7 C -0.042 4.042 8 C 0.494 3.506 9 O -0.493 6.493 10 N -0.616 5.616 11 C 0.106 3.894 12 C -0.134 4.134 13 C -0.110 4.110 14 C -0.127 4.127 15 C 0.155 3.845 16 H 0.088 0.912 17 C 0.163 3.837 18 H 0.056 0.944 19 C -0.162 4.162 20 N -0.702 5.702 21 C -0.140 4.140 22 H 0.036 0.964 23 C -0.066 4.066 24 N -0.972 5.972 25 Si 0.937 3.063 26 H -0.303 1.303 27 H -0.304 1.304 28 H -0.287 1.287 29 N -0.549 5.549 30 H 0.432 0.568 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.101 0.899 42 H 0.039 0.961 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.034 0.966 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.023 0.977 49 H 0.049 0.951 50 H 0.367 0.633 51 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -6.169 22.466 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.078 4.078 3 C -0.119 4.119 4 C -0.222 4.222 5 N -0.205 5.205 6 C -0.059 4.059 7 C -0.083 4.083 8 C 0.279 3.721 9 O -0.365 6.365 10 N -0.352 5.352 11 C -0.015 4.015 12 C -0.172 4.172 13 C -0.147 4.147 14 C -0.166 4.166 15 C 0.051 3.949 16 H 0.106 0.894 17 C 0.055 3.945 18 H 0.073 0.927 19 C -0.222 4.222 20 N -0.342 5.342 21 C -0.273 4.273 22 H 0.054 0.946 23 C -0.256 4.256 24 N -0.628 5.628 25 Si 0.772 3.228 26 H -0.232 1.232 27 H -0.232 1.232 28 H -0.214 1.214 29 N -0.155 5.155 30 H 0.273 0.727 31 H 0.102 0.898 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.105 0.895 35 H 0.113 0.887 36 H 0.158 0.842 37 H 0.162 0.838 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.120 0.880 42 H 0.058 0.942 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.052 0.948 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.043 0.957 49 H 0.068 0.932 50 H 0.201 0.799 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -1.253 -5.979 21.270 22.129 hybrid contribution -0.821 -0.834 -1.129 1.626 sum -2.073 -6.813 20.140 21.362 Atomic orbital electron populations 1.21732 0.93581 1.02894 1.01711 1.20087 0.96576 0.86654 1.04519 1.21512 1.06959 0.97090 0.86379 1.22150 1.09095 0.91877 0.99106 1.70428 1.15936 1.24003 1.10086 1.22694 1.04453 0.88112 0.90617 1.20011 0.95223 0.94299 0.98767 1.20456 0.87229 0.81460 0.82929 1.90906 1.65225 1.55112 1.25219 1.47955 1.24389 1.34958 1.27947 1.21958 1.00311 0.93381 0.85891 1.21920 0.97294 0.95750 1.02260 1.21475 0.97468 0.99782 0.95999 1.21914 1.01362 0.94830 0.98495 1.21371 0.85839 0.93133 0.94566 0.89412 1.20773 0.87518 0.98090 0.88120 0.92657 1.22468 0.98981 1.00737 1.00027 1.42362 1.38333 1.26315 1.27157 1.18807 1.09649 0.99961 0.98855 0.94601 1.24745 1.00102 0.99063 1.01685 1.69728 1.25951 1.27945 1.39171 0.85609 0.77080 0.79060 0.81053 1.23150 1.23157 1.21379 1.42936 1.51195 1.11386 1.09969 0.72724 0.89838 0.92635 0.93885 0.89523 0.88714 0.84209 0.83756 0.87368 0.88975 0.88504 0.88044 0.94218 0.91609 0.89797 0.94769 0.90752 0.91588 0.95748 0.93194 0.79911 0.95715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.89 71.98 0.71 -1.69 16 2 C -0.04 -0.77 6.49 29.85 0.19 -0.58 16 3 C 0.00 -0.07 6.49 40.95 0.27 0.19 16 4 C -0.07 -3.12 11.79 83.52 0.98 -2.13 16 5 N -0.49 -23.46 10.60 -188.13 -1.99 -25.45 16 6 C 0.21 7.46 6.95 138.13 0.96 8.43 16 7 C -0.04 -1.21 4.68 29.10 0.14 -1.08 16 8 C 0.49 18.49 7.11 87.66 0.62 19.11 16 9 O -0.49 -24.12 8.74 -3.03 -0.03 -24.15 16 10 N -0.62 -18.45 2.96 -795.01 -2.36 -20.81 16 11 C 0.11 1.98 6.35 86.36 0.55 2.53 16 12 C -0.13 -2.60 6.08 30.67 0.19 -2.41 16 13 C -0.11 -2.29 5.88 30.62 0.18 -2.11 16 14 C -0.13 -3.83 4.81 30.67 0.15 -3.68 16 15 C 0.15 4.95 2.74 44.98 0.12 5.08 16 16 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 17 C 0.16 7.01 1.89 44.99 0.08 7.10 16 18 H 0.06 2.72 5.89 -5.29 -0.03 2.69 16 19 C -0.16 -6.23 9.32 71.98 0.67 -5.56 16 20 N -0.70 -37.73 3.48 -322.92 -1.12 -38.85 16 21 C -0.14 -8.71 8.10 84.03 0.68 -8.03 16 22 H 0.04 2.37 7.83 -2.91 -0.02 2.34 16 23 C -0.07 -4.29 5.50 84.86 0.47 -3.82 16 24 N -0.97 -65.66 13.06 21.65 0.28 -65.37 16 25 Si 0.94 54.90 29.55 68.60 2.03 56.92 16 26 H -0.30 -18.09 7.11 99.48 0.71 -17.39 16 27 H -0.30 -17.64 7.11 99.48 0.71 -16.93 16 28 H -0.29 -16.31 7.11 99.48 0.71 -15.60 16 29 N -0.55 -14.61 6.15 -174.60 -1.07 -15.68 16 30 H 0.43 7.05 8.96 -92.71 -0.83 6.22 16 31 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 32 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.14 6.04 8.06 -2.91 -0.02 6.02 16 37 H 0.14 2.42 7.70 -2.39 -0.02 2.40 16 38 H 0.11 3.15 7.93 -2.38 -0.02 3.13 16 39 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.10 1.41 5.93 -2.38 -0.01 1.40 16 41 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.03 1.35 6.23 -2.39 -0.01 1.33 16 46 H 0.07 2.12 6.69 -2.39 -0.02 2.11 16 47 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.02 1.05 8.14 -2.38 -0.02 1.03 16 49 H 0.05 1.83 6.39 -2.39 -0.02 1.81 16 50 H 0.37 21.19 5.85 -92.71 -0.54 20.64 16 51 H 0.23 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -91.98 391.56 2.25 -89.73 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: -0.45 Total: 32.32 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 6.97 Total: 11.34 kcal Atomic # 7 Polarization: -159.90 SS G_CDS: -6.26 Total: -166.17 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.03 Total: -24.15 kcal Atomic # 14 Polarization: 54.90 SS G_CDS: 2.03 Total: 56.92 kcal Total: -91.98 2.25 -89.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490293829.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.425 kcal (2) G-P(sol) polarization free energy of solvation -91.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.46 seconds