Wall clock time and date at job start Tue Mar 31 2020 19:51:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.53000 * 109.47487 * 2 1
4 4 C 1.50695 * 109.47656 * 180.02562 * 3 2 1
5 5 C 1.35368 * 126.38342 * 85.00061 * 4 3 2
6 6 C 1.41500 * 105.50645 * 180.02562 * 5 4 3
7 7 C 1.47705 * 126.52124 * 179.97438 * 6 5 4
8 8 O 1.21568 * 120.00109 * 6.51928 * 7 6 5
9 9 N 1.34778 * 120.00157 * 186.51840 * 7 6 5
10 10 C 1.46929 * 120.62903 * 355.98609 * 9 7 6
11 11 C 1.53189 * 108.77599 * 126.43810 * 10 9 7
12 12 C 1.53037 * 109.31384 * 54.63134 * 11 10 9
13 13 C 1.53032 * 109.53894 * 298.63885 * 12 11 10
14 14 H 1.09000 * 109.50297 * 301.37892 * 13 12 11
15 15 C 1.53001 * 109.49841 * 181.31531 * 13 12 11
16 16 N 1.46499 * 109.47582 * 175.06068 * 15 13 12
17 17 C 1.46494 * 120.00366 * 270.00523 * 16 15 13
18 18 C 1.36936 * 119.99656 * 89.99901 * 16 15 13
19 19 H 1.08004 * 120.00219 * 333.73229 * 18 16 15
20 20 C 1.38813 * 120.00013 * 154.00778 * 18 16 15
21 21 N 1.31616 * 119.99911 * 350.77565 * 20 18 16
22 22 Si 1.86800 * 119.99909 * 170.77948 * 20 18 16
23 23 H 1.48498 * 109.47521 * 359.97438 * 22 20 18
24 24 H 1.48504 * 109.47103 * 120.00288 * 22 20 18
25 25 H 1.48509 * 109.46838 * 239.99567 * 22 20 18
26 26 C 1.46928 * 120.60827 * 176.01139 * 9 7 6
27 27 N 1.31817 * 106.95877 * 0.23932 * 6 5 4
28 28 N 1.28467 * 110.07400 * 359.59705 * 27 6 5
29 29 H 0.96998 * 124.88220 * 180.13422 * 28 27 6
30 30 H 1.09000 * 109.47103 * 59.99541 * 1 2 3
31 31 H 1.09001 * 109.47160 * 180.02562 * 1 2 3
32 32 H 1.09005 * 109.46509 * 299.99947 * 1 2 3
33 33 H 1.09007 * 109.46942 * 240.00674 * 2 1 3
34 34 H 1.09000 * 109.47613 * 120.00593 * 2 1 3
35 35 H 1.09005 * 109.46902 * 59.99757 * 3 2 1
36 36 H 1.09000 * 109.47178 * 300.00859 * 3 2 1
37 37 H 1.08007 * 127.24703 * 0.02562 * 5 4 3
38 38 H 1.08998 * 109.58624 * 6.64742 * 10 9 7
39 39 H 1.09003 * 109.58613 * 246.22710 * 10 9 7
40 40 H 1.09001 * 109.49402 * 294.68266 * 11 10 9
41 41 H 1.09000 * 109.50139 * 174.59033 * 11 10 9
42 42 H 1.09001 * 109.45932 * 178.61710 * 12 11 10
43 43 H 1.08994 * 109.45679 * 58.66144 * 12 11 10
44 44 H 1.09007 * 109.46905 * 55.06256 * 15 13 12
45 45 H 1.08996 * 109.47182 * 295.06556 * 15 13 12
46 46 H 1.08999 * 109.47355 * 273.06809 * 17 16 15
47 47 H 1.08996 * 109.47259 * 33.06856 * 17 16 15
48 48 H 1.09003 * 109.47130 * 153.06813 * 17 16 15
49 49 H 0.96996 * 119.99854 * 179.97438 * 21 20 18
50 50 H 1.08997 * 109.56297 * 113.75950 * 26 9 7
51 51 H 1.09007 * 109.61270 * 353.33331 * 26 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 3.5470 1.4425 -0.0006
5 6 4.3496 1.3477 -1.0866
6 6 5.6719 1.3910 -0.5848
7 6 6.9159 1.3211 -1.3781
8 8 6.8639 1.3348 -2.5926
9 7 8.1086 1.2420 -0.7555
10 6 8.1944 1.3126 0.7096
11 6 8.9699 0.0931 1.2175
12 6 10.3257 0.0252 0.5109
13 6 10.1103 -0.1325 -0.9959
14 1 9.5331 -1.0369 -1.1883
15 6 11.4661 -0.2332 -1.6978
16 7 11.2595 -0.5019 -3.1231
17 6 11.1832 -1.8834 -3.6045
18 6 11.1375 0.5383 -4.0053
19 1 10.7732 1.4960 -3.6639
20 6 11.4767 0.3602 -5.3395
21 7 12.0835 -0.7432 -5.7226
22 14 11.0722 1.6866 -6.5911
23 1 10.3943 2.8191 -5.9107
24 1 12.3259 2.1680 -7.2249
25 1 10.1742 1.1266 -7.6330
26 6 9.3475 1.0840 -1.5295
27 7 5.5823 1.4999 0.7258
28 7 4.3486 1.5365 1.0820
29 1 4.0376 1.6159 1.9973
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3632 0.5139 0.8901
33 1 1.8933 -0.5138 -0.8901
34 1 1.8934 -0.5139 0.8899
35 1 1.6767 1.9563 0.8900
36 1 1.6767 1.9564 -0.8899
37 1 4.0447 1.2579 -2.1189
38 1 7.1908 1.3106 1.1349
39 1 8.7154 2.2245 1.0015
40 1 8.4029 -0.8131 1.0044
41 1 9.1240 0.1818 2.2928
42 1 10.8896 -0.8278 0.8884
43 1 10.8822 0.9423 0.7042
44 1 12.0450 -1.0440 -1.2554
45 1 12.0069 0.7057 -1.5798
46 1 12.1872 -2.2495 -3.8188
47 1 10.7236 -2.5097 -2.8399
48 1 10.5819 -1.9189 -4.5130
49 1 12.3202 -0.8677 -6.6550
50 1 9.9623 1.9774 -1.4205
51 1 9.1049 0.9309 -2.5811
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001490765282.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:51:59
Heat of formation + Delta-G solvation = 56.945507 kcal
Electronic energy + Delta-G solvation = -29649.507782 eV
Core-core repulsion = 25779.075147 eV
Total energy + Delta-G solvation = -3870.432635 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-42.88910 -39.59566 -37.32019 -35.77416 -35.33912 -33.00565 -31.87932 -31.46085
-31.22444 -29.92729 -26.96166 -26.02204 -25.83346 -25.27990 -23.03277 -22.46627
-22.23732 -21.19403 -20.67424 -19.52416 -18.69543 -18.04082 -16.65282 -16.41787
-15.92818 -15.53658 -15.37416 -14.85144 -14.63681 -14.39712 -14.27902 -13.83113
-13.78551 -13.51207 -13.38215 -13.22668 -13.00558 -12.75327 -12.59995 -12.34529
-12.17290 -11.91343 -11.73166 -11.65674 -11.41048 -11.14775 -10.86533 -10.76605
-10.69863 -10.62756 -10.30820 -10.14910 -10.05204 -9.97951 -9.72147 -9.60595
-9.51422 -9.44401 -9.14542 -8.37625 -8.18794 -6.54818 -5.60747 -3.07632
1.50875 1.99347 2.60043 3.34099 3.49649 3.56916 3.61312 3.61872
4.19792 4.34285 4.48394 4.59545 4.63124 4.84137 4.99842 5.05071
5.19484 5.21528 5.25538 5.32835 5.34382 5.46597 5.53850 5.56926
5.58339 5.62224 5.65481 5.79686 5.85330 5.89932 5.95872 5.97475
6.11152 6.26249 6.26971 6.29957 6.39307 6.44607 6.61889 6.70772
6.78430 6.91109 6.94855 7.07358 7.12417 7.52969 7.67215 7.82798
7.86434 7.95158 8.51918 8.56224 9.38257 10.01022 10.51408 11.45701
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.013141 B = 0.002976 C = 0.002640
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2130.189154 B = 9406.995851 C =10603.853261
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.122 4.122
3 C -0.050 4.050
4 C 0.018 3.982
5 C -0.175 4.175
6 C 0.008 3.992
7 C 0.591 3.409
8 O -0.524 6.524
9 N -0.596 5.596
10 C 0.074 3.926
11 C -0.129 4.129
12 C -0.115 4.115
13 C -0.119 4.119
14 H 0.065 0.935
15 C 0.158 3.842
16 N -0.601 5.601
17 C 0.164 3.836
18 C -0.248 4.248
19 H 0.069 0.931
20 C 0.002 3.998
21 N -0.909 5.909
22 Si 0.900 3.100
23 H -0.276 1.276
24 H -0.292 1.292
25 H -0.290 1.290
26 C 0.122 3.878
27 N -0.263 5.263
28 N -0.388 5.388
29 H 0.441 0.559
30 H 0.057 0.943
31 H 0.057 0.943
32 H 0.054 0.946
33 H 0.071 0.929
34 H 0.061 0.939
35 H 0.075 0.925
36 H 0.092 0.908
37 H 0.162 0.838
38 H 0.133 0.867
39 H 0.059 0.941
40 H 0.060 0.940
41 H 0.065 0.935
42 H 0.059 0.941
43 H 0.060 0.940
44 H 0.038 0.962
45 H 0.047 0.953
46 H 0.018 0.982
47 H -0.009 1.009
48 H 0.054 0.946
49 H 0.250 0.750
50 H 0.059 0.941
51 H 0.114 0.886
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.000 2.938 19.342 27.977
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.160 4.160
3 C -0.089 4.089
4 C -0.108 4.108
5 C -0.203 4.203
6 C -0.153 4.153
7 C 0.376 3.624
8 O -0.398 6.398
9 N -0.328 5.328
10 C -0.050 4.050
11 C -0.167 4.167
12 C -0.153 4.153
13 C -0.141 4.141
14 H 0.083 0.917
15 C 0.030 3.970
16 N -0.324 5.324
17 C 0.020 3.980
18 C -0.378 4.378
19 H 0.087 0.913
20 C -0.196 4.196
21 N -0.555 5.555
22 Si 0.731 3.269
23 H -0.201 1.201
24 H -0.219 1.219
25 H -0.216 1.216
26 C 0.001 3.999
27 N -0.098 5.098
28 N -0.100 5.100
29 H 0.285 0.715
30 H 0.077 0.923
31 H 0.076 0.924
32 H 0.073 0.927
33 H 0.090 0.910
34 H 0.080 0.920
35 H 0.093 0.907
36 H 0.110 0.890
37 H 0.180 0.820
38 H 0.149 0.851
39 H 0.077 0.923
40 H 0.079 0.921
41 H 0.084 0.916
42 H 0.078 0.922
43 H 0.078 0.922
44 H 0.056 0.944
45 H 0.066 0.934
46 H 0.036 0.964
47 H 0.009 0.991
48 H 0.072 0.928
49 H 0.061 0.939
50 H 0.078 0.922
51 H 0.132 0.868
Dipole moment (debyes) X Y Z Total
from point charges -19.285 2.975 19.384 27.505
hybrid contribution -0.669 0.585 -0.809 1.202
sum -19.954 3.560 18.575 27.493
Atomic orbital electron populations
1.21780 0.95224 1.02071 1.01967 1.21551 0.95995 0.95465 1.02986
1.20227 0.86329 0.98321 1.04022 1.21394 0.94899 1.07145 0.87362
1.21535 0.90438 1.08425 0.99898 1.22164 0.95523 1.08052 0.89530
1.17039 0.81530 0.77387 0.86422 1.90848 1.86072 1.50196 1.12681
1.48102 1.06484 1.70718 1.07502 1.22646 1.04839 0.97564 0.79977
1.21856 0.97048 0.98510 0.99277 1.21574 0.96223 1.01560 0.95972
1.22223 1.00365 0.98024 0.93485 0.91692 1.20719 0.91940 0.98810
0.85538 1.43867 1.84215 1.02914 1.01373 1.20738 0.98520 0.83262
0.95515 1.19237 1.36547 0.92473 0.89542 0.91303 1.25075 0.98728
0.97385 0.98370 1.70060 1.43518 1.26279 1.15623 0.86228 0.77367
0.81588 0.81744 1.20095 1.21896 1.21646 1.21915 0.82627 0.97172
0.98144 1.73177 1.00509 1.21152 1.14922 1.43519 1.03281 1.53468
1.09724 0.71534 0.92345 0.92403 0.92738 0.91004 0.92000 0.90681
0.88966 0.82016 0.85080 0.92273 0.92136 0.91597 0.92210 0.92162
0.94375 0.93449 0.96406 0.99100 0.92753 0.93950 0.92224 0.86756
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16
2 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16
3 C -0.05 -0.27 5.77 -27.89 -0.16 -0.43 16
4 C 0.02 0.16 6.48 -82.21 -0.53 -0.37 16
5 C -0.18 -2.20 10.73 -39.36 -0.42 -2.62 16
6 C 0.01 0.12 6.90 -82.76 -0.57 -0.45 16
7 C 0.59 11.08 7.70 -12.39 -0.10 10.99 16
8 O -0.52 -11.89 16.36 5.31 0.09 -11.81 16
9 N -0.60 -10.41 2.97 -173.93 -0.52 -10.93 16
10 C 0.07 1.01 6.32 -3.71 -0.02 0.98 16
11 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16
12 C -0.11 -1.65 5.17 -26.70 -0.14 -1.78 16
13 C -0.12 -2.18 2.54 -90.51 -0.23 -2.41 16
14 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16
15 C 0.16 3.33 5.19 -4.04 -0.02 3.30 16
16 N -0.60 -15.60 2.81 -181.12 -0.51 -16.11 16
17 C 0.16 4.27 8.98 59.84 0.54 4.81 16
18 C -0.25 -7.01 8.32 -15.06 -0.13 -7.14 16
19 H 0.07 1.92 6.62 -52.48 -0.35 1.57 16
20 C 0.00 0.07 5.12 -17.43 -0.09 -0.02 16
21 N -0.91 -27.55 10.74 55.49 0.60 -26.95 16
22 Si 0.90 23.17 29.56 -169.99 -5.03 18.14 16
23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16
24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16
25 H -0.29 -7.53 7.11 56.52 0.40 -7.12 16
26 C 0.12 2.41 4.64 -3.71 -0.02 2.40 16
27 N -0.26 -3.15 8.56 33.42 0.29 -2.86 16
28 N -0.39 -3.25 6.83 33.50 0.23 -3.02 16
29 H 0.44 1.95 8.96 -190.44 -1.71 0.24 16
30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
32 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16
33 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16
34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
35 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16
36 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16
37 H 0.16 1.99 8.06 -52.48 -0.42 1.56 16
38 H 0.13 1.68 3.71 -117.24 -0.44 1.24 16
39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16
41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16
43 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
44 H 0.04 0.76 8.07 -51.93 -0.42 0.34 16
45 H 0.05 0.99 8.04 -51.93 -0.42 0.58 16
46 H 0.02 0.48 7.75 -51.93 -0.40 0.08 16
47 H -0.01 -0.22 8.09 -51.93 -0.42 -0.64 16
48 H 0.05 1.54 6.89 -51.93 -0.36 1.18 16
49 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16
50 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16
51 H 0.11 2.76 5.38 -51.93 -0.28 2.48 16
LS Contribution 398.79 15.07 6.01 6.01
Total: -1.00 -34.70 398.79 -10.95 -45.65
By element:
Atomic # 1 Polarization: 7.83 SS G_CDS: -10.26 Total: -2.43 kcal
Atomic # 6 Polarization: 6.15 SS G_CDS: -1.84 Total: 4.30 kcal
Atomic # 7 Polarization: -59.95 SS G_CDS: 0.09 Total: -59.87 kcal
Atomic # 8 Polarization: -11.89 SS G_CDS: 0.09 Total: -11.81 kcal
Atomic # 14 Polarization: 23.17 SS G_CDS: -5.03 Total: 18.14 kcal
Total LS contribution 6.01 Total: 6.01 kcal
Total: -34.70 -10.95 -45.65 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001490765282.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.596 kcal
(2) G-P(sol) polarization free energy of solvation -34.703 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.893 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.650 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.946 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.08 seconds