Wall clock time and date at job start Tue Mar 31 2020 19:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47321 * 2 1 4 4 C 1.50697 * 109.47014 * 180.02562 * 3 2 1 5 5 C 1.35364 * 126.38974 * 275.26113 * 4 3 2 6 6 C 1.41496 * 105.50510 * 180.15864 * 5 4 3 7 7 C 1.47719 * 126.51793 * 179.90270 * 6 5 4 8 8 O 1.21569 * 119.99439 * 353.24609 * 7 6 5 9 9 N 1.34771 * 119.99965 * 173.24123 * 7 6 5 10 10 C 1.46931 * 120.63214 * 354.02456 * 9 7 6 11 11 C 1.53192 * 108.76467 * 126.36083 * 10 9 7 12 12 C 1.53038 * 109.31494 * 54.65518 * 11 10 9 13 13 C 1.53046 * 109.52526 * 298.61517 * 12 11 10 14 14 H 1.08998 * 109.49342 * 301.41743 * 13 12 11 15 15 C 1.52999 * 109.49524 * 181.35653 * 13 12 11 16 16 C 1.53001 * 109.47023 * 174.99951 * 15 13 12 17 17 N 1.46496 * 109.47031 * 180.02562 * 16 15 13 18 18 C 1.36935 * 120.00180 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99944 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00501 * 179.97438 * 18 17 16 21 21 N 1.31619 * 119.99515 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00297 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47243 * 59.99787 * 22 20 18 24 24 H 1.48494 * 109.47073 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.46908 * 299.99858 * 22 20 18 26 26 C 1.46924 * 120.63009 * 173.99858 * 9 7 6 27 27 N 1.31809 * 106.96387 * 359.64115 * 6 5 4 28 28 N 1.28463 * 110.07086 * 0.22637 * 27 6 5 29 29 H 0.97001 * 124.87963 * 180.02562 * 28 27 6 30 30 H 1.09000 * 109.47011 * 300.00263 * 1 2 3 31 31 H 1.09005 * 109.47012 * 59.99838 * 1 2 3 32 32 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46940 * 240.00466 * 2 1 3 34 34 H 1.08998 * 109.47290 * 120.00774 * 2 1 3 35 35 H 1.08999 * 109.46768 * 59.99875 * 3 2 1 36 36 H 1.09001 * 109.46756 * 300.00205 * 3 2 1 37 37 H 1.08000 * 127.24480 * 0.05175 * 5 4 3 38 38 H 1.09001 * 109.58806 * 246.15261 * 10 9 7 39 39 H 1.09001 * 109.58627 * 6.58183 * 10 9 7 40 40 H 1.09000 * 109.50715 * 294.69185 * 11 10 9 41 41 H 1.09003 * 109.48685 * 174.60518 * 11 10 9 42 42 H 1.08996 * 109.45826 * 178.59962 * 12 11 10 43 43 H 1.08998 * 109.46060 * 58.62381 * 12 11 10 44 44 H 1.09005 * 109.46980 * 295.00043 * 15 13 12 45 45 H 1.09007 * 109.47140 * 54.99744 * 15 13 12 46 46 H 1.08997 * 109.47131 * 299.99644 * 16 15 13 47 47 H 1.08994 * 109.46753 * 59.99951 * 16 15 13 48 48 H 0.97009 * 120.00119 * 359.97438 * 17 16 15 49 49 H 0.97009 * 119.99666 * 180.02562 * 21 20 18 50 50 H 1.08996 * 109.58958 * 113.84565 * 26 9 7 51 51 H 1.09000 * 109.58792 * 353.41841 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3505 1.3423 1.0841 6 6 5.6723 1.3923 0.5816 7 6 6.9171 1.3226 1.3739 8 8 6.8660 1.3347 2.5884 9 7 8.1094 1.2455 0.7502 10 6 8.1824 1.0983 -0.7099 11 6 9.0799 2.2049 -1.2725 12 6 10.4379 2.1624 -0.5682 13 6 10.2453 2.4117 0.9295 14 1 9.7664 3.3795 1.0785 15 6 11.6066 2.4026 1.6279 16 6 11.4266 2.7748 3.1010 17 7 12.7301 2.7667 3.7695 18 6 12.8182 3.0707 5.1017 19 1 11.9268 3.3168 5.6596 20 6 14.0533 3.0625 5.7354 21 7 15.1396 2.7621 5.0557 22 14 14.1735 3.4779 7.5526 23 1 13.3620 2.5119 8.3360 24 1 15.5918 3.3992 7.9855 25 1 13.6624 4.8533 7.7808 26 6 9.3609 1.3076 1.5174 27 7 5.5817 1.5072 -0.7283 28 7 4.3476 1.5378 -1.0839 29 1 4.0358 1.6176 -1.9989 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 4.0467 1.2464 2.1160 38 1 8.6037 0.1242 -0.9583 39 1 7.1831 1.1861 -1.1364 40 1 8.6120 3.1746 -1.1026 41 1 9.2200 2.0507 -2.3425 42 1 11.0869 2.9329 -0.9841 43 1 10.8939 1.1837 -0.7176 44 1 12.0454 1.4075 1.5555 45 1 12.2659 3.1262 1.1482 46 1 10.9878 3.7699 3.1733 47 1 10.7674 2.0513 3.5805 48 1 13.5307 2.5453 3.2685 49 1 16.0026 2.7560 5.4985 50 1 9.8783 0.3507 1.4506 51 1 9.1393 1.5336 2.5604 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495373159.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:17 Heat of formation + Delta-G solvation = 12.436393 kcal Electronic energy + Delta-G solvation = -28512.247824 eV Core-core repulsion = 24639.885129 eV Total energy + Delta-G solvation = -3872.362695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.80333 -41.07800 -38.87206 -36.98059 -36.25318 -35.04101 -33.45584 -32.91961 -32.28750 -31.87084 -29.08669 -27.45619 -27.11572 -25.87521 -24.22921 -24.00663 -22.88450 -22.17631 -21.92624 -21.20117 -19.93857 -19.13977 -18.98114 -17.70950 -17.13808 -16.90247 -16.69191 -16.10007 -15.94047 -15.78590 -15.49274 -15.34415 -15.21348 -14.89508 -14.75723 -14.53642 -14.25973 -14.19202 -14.03285 -13.86700 -13.43690 -13.06155 -12.97332 -12.80778 -12.60477 -12.46903 -12.39370 -12.19236 -12.12113 -12.11649 -11.94912 -11.80431 -11.67145 -11.54987 -11.42537 -11.21190 -10.92954 -10.80088 -10.47551 -9.96976 -9.65144 -9.02573 -7.97350 -5.26699 0.41651 1.07113 1.44747 1.48787 1.55080 1.71427 2.11511 2.26843 2.54465 3.22143 3.35199 3.60073 3.65315 3.79924 3.87186 3.94196 4.10776 4.13636 4.17993 4.20830 4.32985 4.40606 4.44807 4.49642 4.51405 4.64574 4.68867 4.69884 4.73922 4.85659 4.86462 4.91544 4.92783 4.99553 5.02339 5.06461 5.11278 5.20003 5.25728 5.30139 5.32923 5.35427 5.39772 5.45919 5.48733 5.50483 5.60299 6.10026 6.25261 6.34220 6.82353 7.07993 7.31107 8.06165 8.31786 9.25789 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017875 B = 0.002050 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.053262 B =13657.764997 C =14981.719279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.048 4.048 4 C 0.046 3.954 5 C -0.201 4.201 6 C -0.027 4.027 7 C 0.588 3.412 8 O -0.579 6.579 9 N -0.595 5.595 10 C 0.070 3.930 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.083 4.083 14 H 0.062 0.938 15 C -0.103 4.103 16 C 0.149 3.851 17 N -0.745 5.745 18 C -0.254 4.254 19 H 0.069 0.931 20 C -0.074 4.074 21 N -0.967 5.967 22 Si 0.976 3.024 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.278 1.278 26 C 0.116 3.884 27 N -0.257 5.257 28 N -0.361 5.361 29 H 0.462 0.538 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.155 0.845 38 H 0.073 0.927 39 H 0.143 0.857 40 H 0.056 0.944 41 H 0.102 0.898 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.010 0.990 47 H 0.014 0.986 48 H 0.375 0.625 49 H 0.253 0.747 50 H 0.075 0.925 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.026 -4.918 -23.274 39.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.086 4.086 4 C -0.082 4.082 5 C -0.229 4.229 6 C -0.186 4.186 7 C 0.376 3.624 8 O -0.457 6.457 9 N -0.326 5.326 10 C -0.052 4.052 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.103 4.103 14 H 0.081 0.919 15 C -0.141 4.141 16 C 0.023 3.977 17 N -0.388 5.388 18 C -0.385 4.385 19 H 0.087 0.913 20 C -0.266 4.266 21 N -0.617 5.617 22 Si 0.804 3.196 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.204 1.204 26 C -0.006 4.006 27 N -0.093 5.093 28 N -0.078 5.078 29 H 0.311 0.689 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.173 0.827 38 H 0.091 0.909 39 H 0.160 0.840 40 H 0.075 0.925 41 H 0.120 0.880 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.085 0.915 45 H 0.088 0.912 46 H 0.028 0.972 47 H 0.032 0.968 48 H 0.208 0.792 49 H 0.062 0.938 50 H 0.093 0.907 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -30.453 -4.784 -23.410 38.708 hybrid contribution 0.412 0.106 1.626 1.681 sum -30.041 -4.678 -21.785 37.402 Atomic orbital electron populations 1.21767 0.94370 1.02186 1.02614 1.21513 0.96695 0.95156 1.02387 1.20388 0.83618 0.98781 1.05860 1.21713 0.96206 1.04122 0.86116 1.21644 0.90313 1.10102 1.00868 1.21653 0.94579 1.11732 0.90630 1.17523 0.82794 0.75975 0.86122 1.90779 1.87049 1.52925 1.14984 1.48062 1.04572 1.70511 1.09481 1.22916 1.05742 0.99244 0.77291 1.21821 0.94555 0.98504 1.01010 1.21601 0.97968 1.03028 0.92365 1.21327 0.94199 0.98110 0.96693 0.91950 1.21584 0.96866 1.02088 0.93589 1.20849 0.87241 0.96877 0.92741 1.42554 1.04760 1.83763 1.07734 1.19597 0.93292 1.38218 0.87428 0.91302 1.25593 0.95132 1.03160 1.02710 1.69810 0.98015 1.56865 1.37035 0.85183 0.76405 0.78232 0.79775 1.20519 1.21486 1.20401 1.21698 0.83725 0.99381 0.95796 1.73007 1.02185 1.20650 1.13487 1.43590 1.02240 1.51010 1.10922 0.68897 0.92325 0.91536 0.92618 0.91632 0.92594 0.88383 0.87720 0.82698 0.90892 0.84017 0.92480 0.88004 0.90642 0.90835 0.91486 0.91211 0.97215 0.96817 0.79245 0.93829 0.90687 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 71.98 0.71 0.10 16 2 C -0.12 -0.68 5.92 30.59 0.18 -0.49 16 3 C -0.05 -0.23 5.77 29.85 0.17 -0.06 16 4 C 0.05 0.54 6.48 41.40 0.27 0.81 16 5 C -0.20 -4.12 10.73 22.41 0.24 -3.88 16 6 C -0.03 -0.67 6.87 42.46 0.29 -0.38 16 7 C 0.59 18.79 7.69 86.75 0.67 19.45 16 8 O -0.58 -23.32 16.37 -3.93 -0.06 -23.39 16 9 N -0.60 -16.59 2.97 -822.46 -2.44 -19.04 16 10 C 0.07 1.39 6.33 86.36 0.55 1.94 16 11 C -0.12 -2.11 6.08 30.67 0.19 -1.92 16 12 C -0.11 -2.34 5.17 30.62 0.16 -2.18 16 13 C -0.08 -2.36 2.33 -10.71 -0.03 -2.39 16 14 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 15 C -0.10 -3.52 4.80 30.59 0.15 -3.37 16 16 C 0.15 6.71 6.02 86.38 0.52 7.23 16 17 N -0.75 -41.22 5.60 -343.47 -1.92 -43.15 16 18 C -0.25 -15.34 9.99 84.03 0.84 -14.50 16 19 H 0.07 4.08 7.83 -2.91 -0.02 4.05 16 20 C -0.07 -4.46 5.50 84.86 0.47 -3.99 16 21 N -0.97 -61.37 13.06 21.65 0.28 -61.09 16 22 Si 0.98 48.55 29.55 68.60 2.03 50.57 16 23 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 24 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 25 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 26 C 0.12 3.60 5.31 86.36 0.46 4.05 16 27 N -0.26 -4.56 8.63 -48.17 -0.42 -4.98 16 28 N -0.36 -3.71 6.83 -47.93 -0.33 -4.03 16 29 H 0.46 0.77 8.96 -219.99 -1.97 -1.21 16 30 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 31 H 0.07 0.13 8.14 -2.38 -0.02 0.12 16 32 H 0.05 0.26 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 37 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.14 2.60 3.75 -76.51 -0.29 2.31 16 40 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 45 H 0.07 2.34 8.14 -2.38 -0.02 2.33 16 46 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 47 H 0.01 0.65 6.70 -2.39 -0.02 0.63 16 48 H 0.38 21.50 7.67 -92.70 -0.71 20.79 16 49 H 0.25 15.46 8.31 -92.70 -0.77 14.69 16 50 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.07 2.47 5.77 -2.39 -0.01 2.46 16 Total: -1.00 -80.21 404.71 0.94 -79.27 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: -2.03 Total: 25.42 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: 5.83 Total: 0.41 kcal Atomic # 7 Polarization: -127.46 SS G_CDS: -4.83 Total: -132.29 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.06 Total: -23.39 kcal Atomic # 14 Polarization: 48.55 SS G_CDS: 2.03 Total: 50.57 kcal Total: -80.21 0.94 -79.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495373159.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.707 kcal (2) G-P(sol) polarization free energy of solvation -80.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds