Wall clock time and date at job start Tue Mar 31 2020 17:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47047 * 2 1 4 4 C 1.35364 * 126.38730 * 84.95034 * 3 2 1 5 5 C 1.41503 * 105.50369 * 180.02562 * 4 3 2 6 6 C 1.47715 * 126.51815 * 179.97438 * 5 4 3 7 7 O 1.21565 * 119.99814 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99615 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99655 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46894 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46772 * 180.02562 * 10 9 8 12 12 C 1.53046 * 109.45993 * 295.03081 * 11 10 9 13 13 C 1.53194 * 109.30941 * 178.60164 * 12 11 10 14 14 N 1.46926 * 108.76654 * 54.65643 * 13 12 11 15 15 C 1.36932 * 120.63492 * 126.40325 * 14 13 12 16 16 H 1.08008 * 119.99581 * 332.61161 * 15 14 13 17 17 C 1.38809 * 120.00341 * 152.60555 * 15 14 13 18 18 N 1.31623 * 120.00323 * 159.34607 * 17 15 14 19 19 Si 1.86795 * 120.00044 * 339.34742 * 17 15 14 20 20 H 1.48500 * 109.47377 * 92.94104 * 19 17 15 21 21 H 1.48499 * 109.47196 * 212.94384 * 19 17 15 22 22 H 1.48502 * 109.47302 * 332.94062 * 19 17 15 23 23 C 1.46930 * 118.73971 * 306.38276 * 14 13 12 24 24 C 1.53039 * 109.45743 * 174.97633 * 11 10 9 25 25 N 1.31808 * 106.96627 * 359.97438 * 5 4 3 26 26 N 1.28466 * 110.07003 * 359.97438 * 25 5 4 27 27 C 1.46503 * 124.88377 * 179.73203 * 26 25 5 28 28 H 1.09005 * 109.47397 * 299.99764 * 1 2 3 29 29 H 1.09001 * 109.47499 * 59.99986 * 1 2 3 30 30 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47188 * 239.99551 * 2 1 3 32 32 H 1.09001 * 109.47499 * 120.00014 * 2 1 3 33 33 H 1.07998 * 127.24812 * 0.05974 * 4 3 2 34 34 H 0.96999 * 120.00393 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47168 * 300.00283 * 9 8 6 36 36 H 1.09007 * 109.46960 * 60.00114 * 9 8 6 37 37 H 1.08996 * 109.47609 * 300.00215 * 10 9 8 38 38 H 1.08994 * 109.46920 * 60.00696 * 10 9 8 39 39 H 1.08999 * 109.45872 * 55.00140 * 11 10 9 40 40 H 1.08998 * 109.49641 * 298.56508 * 12 11 10 41 41 H 1.08999 * 109.49887 * 58.66270 * 12 11 10 42 42 H 1.08995 * 109.59925 * 294.86359 * 13 12 11 43 43 H 1.09000 * 109.69858 * 174.50320 * 13 12 11 44 44 H 0.96994 * 120.00526 * 179.97438 * 18 17 15 45 45 H 1.09003 * 109.58536 * 293.82630 * 23 14 13 46 46 H 1.08990 * 109.70745 * 173.46816 * 23 14 13 47 47 H 1.09001 * 109.49948 * 301.33301 * 24 11 10 48 48 H 1.08997 * 109.49783 * 61.43617 * 24 11 10 49 49 H 1.09008 * 109.46905 * 90.03103 * 27 26 25 50 50 H 1.09001 * 109.47481 * 210.02722 * 27 26 25 51 51 H 1.08994 * 109.47632 * 330.03451 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2095 2.2099 1.0855 5 6 2.6914 3.4417 0.5830 6 6 3.0395 4.6386 1.3756 7 8 2.9197 4.6225 2.5853 8 7 3.4898 5.7485 0.7577 9 6 3.8355 6.9354 1.5439 10 6 4.3164 8.0453 0.6071 11 6 4.6781 9.2847 1.4282 12 6 3.4183 9.8374 2.0989 13 6 3.7901 11.0571 2.9480 14 7 4.4962 12.0264 2.0991 15 6 4.0697 13.3252 2.0196 16 1 3.0295 13.5631 2.1867 17 6 4.9741 14.3360 1.7245 18 7 4.5440 15.4866 1.2518 19 14 6.8017 14.0632 1.9982 20 1 7.4216 13.5675 0.7431 21 1 7.4398 15.3447 2.3929 22 1 6.9966 13.0607 3.0762 23 6 5.6691 11.5758 1.3374 24 6 5.2764 10.3500 0.5067 25 7 2.7708 3.3182 -0.7269 26 7 2.3903 2.1439 -1.0828 27 6 2.3439 1.6613 -2.4653 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0229 1.9531 2.1178 34 1 3.5850 5.7615 -0.2075 35 1 2.9572 7.2769 2.0917 36 1 4.6289 6.6860 2.2486 37 1 5.1948 7.7036 0.0596 38 1 3.5234 8.2948 -0.0978 39 1 5.4072 9.0141 2.1920 40 1 2.6986 10.1313 1.3350 41 1 2.9795 9.0703 2.7370 42 1 4.4389 10.7481 3.7674 43 1 2.8860 11.5141 3.3502 44 1 5.1759 16.1931 1.0459 45 1 6.4712 11.3091 2.0256 46 1 6.0059 12.3733 0.6753 47 1 6.1602 9.9479 0.0114 48 1 4.5389 10.6391 -0.2421 49 1 3.2986 1.2019 -2.7220 50 1 1.5473 0.9242 -2.5663 51 1 2.1516 2.4985 -3.1362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495539405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:41 Heat of formation + Delta-G solvation = 46.810551 kcal Electronic energy + Delta-G solvation = -28196.362959 eV Core-core repulsion = 24325.490840 eV Total energy + Delta-G solvation = -3870.872120 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.05894 -39.52793 -38.18616 -35.49348 -34.90961 -33.81257 -33.49203 -31.47452 -30.34745 -29.83091 -29.10907 -27.70701 -25.24741 -24.16775 -23.50390 -23.00646 -21.91326 -21.22988 -20.95778 -19.76037 -19.19494 -17.59998 -16.79228 -16.74063 -16.70487 -15.84891 -15.48205 -15.16561 -15.06740 -14.60023 -14.29989 -14.06626 -13.95398 -13.82286 -13.70057 -13.37001 -13.28542 -13.12014 -13.01500 -12.88419 -12.63769 -12.27855 -12.13910 -11.79218 -11.72119 -11.63163 -11.41226 -11.13069 -11.07632 -10.72861 -10.50681 -10.34584 -10.25741 -10.02489 -9.72229 -9.56250 -9.49561 -9.33680 -9.29567 -9.06033 -8.54985 -6.89537 -5.89482 -3.24046 1.29952 1.76554 2.04569 3.06881 3.28544 3.36031 3.52465 3.56365 3.92029 4.04614 4.36442 4.50383 4.53270 4.58465 4.69730 4.79674 4.87526 4.94083 4.99578 5.02588 5.05155 5.17678 5.25524 5.31421 5.34680 5.42862 5.49477 5.58941 5.63180 5.65307 5.74410 5.91958 5.94485 6.06138 6.08106 6.11002 6.18610 6.31674 6.34981 6.39457 6.47866 6.54348 6.65026 6.73373 6.76093 6.80271 7.07784 7.31994 7.62532 8.03493 8.10947 8.38824 9.01454 9.78787 10.17934 11.26772 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.031495 B = 0.001781 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.823686 B =15717.980667 C =15976.972580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C 0.012 3.988 4 C -0.176 4.176 5 C -0.013 4.013 6 C 0.602 3.398 7 O -0.533 6.533 8 N -0.716 5.716 9 C 0.117 3.883 10 C -0.125 4.125 11 C -0.076 4.076 12 C -0.132 4.132 13 C 0.148 3.852 14 N -0.607 5.607 15 C -0.256 4.256 16 H 0.084 0.916 17 C 0.021 3.979 18 N -0.911 5.911 19 Si 0.883 3.117 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.271 1.271 23 C 0.126 3.874 24 C -0.127 4.127 25 N -0.262 5.262 26 N -0.281 5.281 27 C 0.084 3.916 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.162 0.838 34 H 0.405 0.595 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.021 0.979 43 H 0.061 0.939 44 H 0.261 0.739 45 H 0.023 0.977 46 H 0.071 0.929 47 H 0.052 0.948 48 H 0.064 0.936 49 H 0.085 0.915 50 H 0.095 0.905 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.157 -34.661 -7.929 35.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.112 4.112 4 C -0.203 4.203 5 C -0.173 4.173 6 C 0.386 3.614 7 O -0.408 6.408 8 N -0.368 5.368 9 C -0.006 4.006 10 C -0.163 4.163 11 C -0.095 4.095 12 C -0.171 4.171 13 C 0.022 3.978 14 N -0.330 5.330 15 C -0.385 4.385 16 H 0.102 0.898 17 C -0.177 4.177 18 N -0.554 5.554 19 Si 0.714 3.286 20 H -0.217 1.217 21 H -0.233 1.233 22 H -0.196 1.196 23 C 0.000 4.000 24 C -0.167 4.167 25 N -0.098 5.098 26 N -0.069 5.069 27 C -0.056 4.056 28 H 0.082 0.918 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.110 0.890 33 H 0.179 0.821 34 H 0.240 0.760 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.041 0.959 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.113 0.887 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.916 -33.910 -8.174 35.226 hybrid contribution 0.963 -0.428 0.148 1.064 sum -3.952 -34.337 -8.025 35.484 Atomic orbital electron populations 1.21778 0.93917 1.02291 1.02723 1.20115 0.96510 0.88675 1.03936 1.21400 1.05978 0.97023 0.86842 1.21508 1.06809 0.92321 0.99707 1.21917 1.08603 0.96927 0.89862 1.16881 0.77049 0.81173 0.86311 1.90804 1.53858 1.82927 1.13193 1.45926 1.66299 1.13111 1.11415 1.21573 1.01049 0.83647 0.94316 1.21885 1.01368 0.94722 0.98329 1.20971 0.98011 0.93164 0.97332 1.22128 0.96812 0.98304 0.99871 1.20926 0.96029 0.89303 0.91578 1.44359 1.32058 1.07437 1.49194 1.18941 0.94371 0.80951 1.44213 0.89790 1.25279 0.97723 0.95148 0.99598 1.69842 1.34436 1.05734 1.45389 0.86936 0.87221 0.76099 0.78324 1.21724 1.23264 1.19612 1.21315 0.89856 0.95108 0.93725 1.22046 0.99859 0.96390 0.98356 1.73514 1.18549 1.02785 1.14963 1.45305 1.45606 1.08173 1.07852 1.22176 1.04235 1.01683 0.77543 0.91766 0.92773 0.91642 0.90712 0.89015 0.82089 0.75995 0.90694 0.91320 0.91630 0.91271 0.91506 0.91927 0.92523 0.96089 0.92010 0.92874 0.95919 0.91106 0.92975 0.91720 0.89635 0.88686 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.89 37.15 0.37 -0.18 16 2 C -0.05 -0.21 6.00 -27.89 -0.17 -0.38 16 3 C 0.01 0.09 6.17 -82.21 -0.51 -0.42 16 4 C -0.18 -1.81 10.73 -39.36 -0.42 -2.24 16 5 C -0.01 -0.16 7.13 -82.76 -0.59 -0.75 16 6 C 0.60 8.35 7.82 -12.39 -0.10 8.25 16 7 O -0.53 -9.02 16.93 5.31 0.09 -8.93 16 8 N -0.72 -8.59 5.55 -61.29 -0.34 -8.93 16 9 C 0.12 1.46 5.43 -4.04 -0.02 1.43 16 10 C -0.13 -1.52 4.80 -26.73 -0.13 -1.65 16 11 C -0.08 -1.15 2.15 -90.57 -0.19 -1.34 16 12 C -0.13 -2.18 5.15 -26.61 -0.14 -2.32 16 13 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 14 N -0.61 -14.73 2.77 -172.32 -0.48 -15.20 16 15 C -0.26 -7.32 10.03 -15.06 -0.15 -7.47 16 16 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 17 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 18 N -0.91 -28.38 13.97 55.49 0.78 -27.61 16 19 Si 0.88 22.89 24.35 -169.99 -4.14 18.75 16 20 H -0.29 -7.21 6.62 56.52 0.37 -6.84 16 21 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 22 H -0.27 -6.93 6.64 56.52 0.38 -6.56 16 23 C 0.13 2.78 4.20 -3.71 -0.02 2.77 16 24 C -0.13 -2.23 5.36 -26.61 -0.14 -2.38 16 25 N -0.26 -2.80 11.67 33.42 0.39 -2.41 16 26 N -0.28 -2.22 3.70 -63.85 -0.24 -2.45 16 27 C 0.08 0.27 10.90 59.85 0.65 0.92 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.07 0.17 7.42 -51.93 -0.39 -0.22 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.41 4.18 8.20 -40.82 -0.33 3.84 16 35 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 0.82 6.50 -51.93 -0.34 0.48 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.02 0.50 7.08 -51.93 -0.37 0.14 16 46 H 0.07 1.72 4.50 -51.93 -0.23 1.49 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.09 0.16 8.14 -51.92 -0.42 -0.26 16 50 H 0.09 0.08 7.44 -51.93 -0.39 -0.30 16 51 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -35.65 400.82 -8.32 -43.97 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -8.75 Total: -0.97 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.67 Total: -2.26 kcal Atomic # 7 Polarization: -56.72 SS G_CDS: 0.11 Total: -56.61 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.09 Total: -8.93 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -4.14 Total: 18.75 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.65 -8.32 -43.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495539405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.780 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds