Wall clock time and date at job start Tue Mar 31 2020 17:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50695 * 109.47047 * 2 1 4 4 C 1.35364 * 126.38730 * 84.95034 * 3 2 1 5 5 C 1.41503 * 105.50369 * 180.02562 * 4 3 2 6 6 C 1.47715 * 126.51815 * 179.97438 * 5 4 3 7 7 O 1.21565 * 119.99814 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99615 * 179.97438 * 6 5 4 9 9 C 1.46509 * 119.99655 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.46894 * 179.97438 * 9 8 6 11 11 C 1.53004 * 109.46772 * 180.02562 * 10 9 8 12 12 C 1.53046 * 109.45993 * 295.03081 * 11 10 9 13 13 C 1.53194 * 109.30941 * 178.60164 * 12 11 10 14 14 N 1.46926 * 108.76654 * 54.65643 * 13 12 11 15 15 C 1.36932 * 120.63492 * 126.40325 * 14 13 12 16 16 H 1.08008 * 119.99581 * 332.61161 * 15 14 13 17 17 C 1.38809 * 120.00341 * 152.60555 * 15 14 13 18 18 N 1.31623 * 120.00323 * 159.34607 * 17 15 14 19 19 Si 1.86795 * 120.00044 * 339.34742 * 17 15 14 20 20 H 1.48500 * 109.47377 * 92.94104 * 19 17 15 21 21 H 1.48499 * 109.47196 * 212.94384 * 19 17 15 22 22 H 1.48502 * 109.47302 * 332.94062 * 19 17 15 23 23 C 1.46930 * 118.73971 * 306.38276 * 14 13 12 24 24 C 1.53039 * 109.45743 * 174.97633 * 11 10 9 25 25 N 1.31808 * 106.96627 * 359.97438 * 5 4 3 26 26 N 1.28466 * 110.07003 * 359.97438 * 25 5 4 27 27 C 1.46503 * 124.88377 * 179.73203 * 26 25 5 28 28 H 1.09005 * 109.47397 * 299.99764 * 1 2 3 29 29 H 1.09001 * 109.47499 * 59.99986 * 1 2 3 30 30 H 1.08997 * 109.47166 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47188 * 239.99551 * 2 1 3 32 32 H 1.09001 * 109.47499 * 120.00014 * 2 1 3 33 33 H 1.07998 * 127.24812 * 0.05974 * 4 3 2 34 34 H 0.96999 * 120.00393 * 0.02562 * 8 6 5 35 35 H 1.08996 * 109.47168 * 300.00283 * 9 8 6 36 36 H 1.09007 * 109.46960 * 60.00114 * 9 8 6 37 37 H 1.08996 * 109.47609 * 300.00215 * 10 9 8 38 38 H 1.08994 * 109.46920 * 60.00696 * 10 9 8 39 39 H 1.08999 * 109.45872 * 55.00140 * 11 10 9 40 40 H 1.08998 * 109.49641 * 298.56508 * 12 11 10 41 41 H 1.08999 * 109.49887 * 58.66270 * 12 11 10 42 42 H 1.08995 * 109.59925 * 294.86359 * 13 12 11 43 43 H 1.09000 * 109.69858 * 174.50320 * 13 12 11 44 44 H 0.96994 * 120.00526 * 179.97438 * 18 17 15 45 45 H 1.09003 * 109.58536 * 293.82630 * 23 14 13 46 46 H 1.08990 * 109.70745 * 173.46816 * 23 14 13 47 47 H 1.09001 * 109.49948 * 301.33301 * 24 11 10 48 48 H 1.08997 * 109.49783 * 61.43617 * 24 11 10 49 49 H 1.09008 * 109.46905 * 90.03103 * 27 26 25 50 50 H 1.09001 * 109.47481 * 210.02722 * 27 26 25 51 51 H 1.08994 * 109.47632 * 330.03451 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 6 2.2095 2.2099 1.0855 5 6 2.6914 3.4417 0.5830 6 6 3.0395 4.6386 1.3756 7 8 2.9197 4.6225 2.5853 8 7 3.4898 5.7485 0.7577 9 6 3.8355 6.9354 1.5439 10 6 4.3164 8.0453 0.6071 11 6 4.6781 9.2847 1.4282 12 6 3.4183 9.8374 2.0989 13 6 3.7901 11.0571 2.9480 14 7 4.4962 12.0264 2.0991 15 6 4.0697 13.3252 2.0196 16 1 3.0295 13.5631 2.1867 17 6 4.9741 14.3360 1.7245 18 7 4.5440 15.4866 1.2518 19 14 6.8017 14.0632 1.9982 20 1 7.4216 13.5675 0.7431 21 1 7.4398 15.3447 2.3929 22 1 6.9966 13.0607 3.0762 23 6 5.6691 11.5758 1.3374 24 6 5.2764 10.3500 0.5067 25 7 2.7708 3.3182 -0.7269 26 7 2.3903 2.1439 -1.0828 27 6 2.3439 1.6613 -2.4653 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0229 1.9531 2.1178 34 1 3.5850 5.7615 -0.2075 35 1 2.9572 7.2769 2.0917 36 1 4.6289 6.6860 2.2486 37 1 5.1948 7.7036 0.0596 38 1 3.5234 8.2948 -0.0978 39 1 5.4072 9.0141 2.1920 40 1 2.6986 10.1313 1.3350 41 1 2.9795 9.0703 2.7370 42 1 4.4389 10.7481 3.7674 43 1 2.8860 11.5141 3.3502 44 1 5.1759 16.1931 1.0459 45 1 6.4712 11.3091 2.0256 46 1 6.0059 12.3733 0.6753 47 1 6.1602 9.9479 0.0114 48 1 4.5389 10.6391 -0.2421 49 1 3.2986 1.2019 -2.7220 50 1 1.5473 0.9242 -2.5663 51 1 2.1516 2.4985 -3.1362 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495539405.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:40 Heat of formation + Delta-G solvation = 22.205099 kcal Electronic energy + Delta-G solvation = -28197.429932 eV Core-core repulsion = 24325.490840 eV Total energy + Delta-G solvation = -3871.939092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -43.72188 -40.59087 -39.66226 -36.81093 -35.41663 -35.01879 -34.32972 -33.38055 -31.90376 -30.66521 -30.15657 -28.43037 -26.72049 -25.01838 -24.54952 -24.19984 -23.24333 -22.37416 -21.91322 -20.91168 -20.37698 -18.77939 -18.24293 -17.53389 -17.35999 -17.17716 -16.82759 -16.48004 -15.91785 -15.47723 -15.43020 -15.26792 -15.20059 -15.07057 -14.75392 -14.48929 -14.30028 -14.20246 -14.05979 -13.69500 -13.41936 -13.41130 -13.22318 -13.15495 -12.90218 -12.51071 -12.46502 -12.30149 -12.16422 -12.07209 -12.01441 -11.74250 -11.68187 -11.55884 -11.34084 -11.11485 -11.05687 -10.63384 -10.29543 -9.96476 -9.94813 -8.90572 -8.16291 -5.46998 0.48337 1.08252 1.29132 1.40952 1.50565 1.54209 2.15573 2.32986 2.41921 3.07099 3.29842 3.38482 3.60292 3.76331 3.88440 3.90854 4.05123 4.16115 4.24754 4.34564 4.35503 4.41962 4.42336 4.46832 4.53758 4.61430 4.62100 4.65091 4.65660 4.70884 4.76933 4.79185 4.92125 4.97784 5.01447 5.06245 5.06803 5.17493 5.25127 5.28332 5.30140 5.30765 5.35078 5.38176 5.40839 5.64095 5.85105 5.88199 6.13041 6.41074 6.87538 6.93974 7.13209 7.64625 8.05467 9.03887 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.031495 B = 0.001781 C = 0.001752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.823686 B =15717.980667 C =15976.972580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.051 4.051 3 C 0.026 3.974 4 C -0.204 4.204 5 C -0.044 4.044 6 C 0.598 3.402 7 O -0.574 6.574 8 N -0.706 5.706 9 C 0.121 3.879 10 C -0.109 4.109 11 C -0.071 4.071 12 C -0.122 4.122 13 C 0.140 3.860 14 N -0.621 5.621 15 C -0.248 4.248 16 H 0.048 0.952 17 C -0.038 4.038 18 N -0.959 5.959 19 Si 0.950 3.050 20 H -0.272 1.272 21 H -0.311 1.311 22 H -0.264 1.264 23 C 0.117 3.883 24 C -0.119 4.119 25 N -0.272 5.272 26 N -0.275 5.275 27 C 0.071 3.929 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.158 0.842 34 H 0.415 0.585 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.032 0.968 43 H 0.049 0.951 44 H 0.261 0.739 45 H 0.031 0.969 46 H 0.047 0.953 47 H 0.083 0.917 48 H 0.054 0.946 49 H 0.104 0.896 50 H 0.123 0.877 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.127 -38.616 -9.594 40.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.090 4.090 3 C -0.099 4.099 4 C -0.232 4.232 5 C -0.202 4.202 6 C 0.384 3.616 7 O -0.452 6.452 8 N -0.357 5.357 9 C -0.002 4.002 10 C -0.147 4.147 11 C -0.090 4.090 12 C -0.161 4.161 13 C 0.015 3.985 14 N -0.346 5.346 15 C -0.378 4.378 16 H 0.066 0.934 17 C -0.232 4.232 18 N -0.605 5.605 19 Si 0.779 3.221 20 H -0.199 1.199 21 H -0.240 1.240 22 H -0.188 1.188 23 C -0.008 4.008 24 C -0.158 4.158 25 N -0.110 5.110 26 N -0.064 5.064 27 C -0.068 4.068 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.175 0.825 34 H 0.251 0.749 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.050 0.950 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.049 0.951 46 H 0.065 0.935 47 H 0.101 0.899 48 H 0.072 0.928 49 H 0.122 0.878 50 H 0.142 0.858 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -3.876 -37.911 -9.875 39.368 hybrid contribution 0.524 0.714 0.617 1.079 sum -3.353 -37.198 -9.258 38.479 Atomic orbital electron populations 1.21765 0.93563 1.03252 1.01949 1.20285 0.96614 0.86379 1.05685 1.21873 1.03997 0.98098 0.85913 1.21677 1.08281 0.92613 1.00625 1.21769 1.10776 0.96985 0.90653 1.17181 0.76452 0.81940 0.86025 1.90766 1.55785 1.83760 1.14884 1.45823 1.65524 1.12526 1.11834 1.21471 1.00481 0.83875 0.94360 1.21701 1.02388 0.92905 0.97712 1.20912 0.97130 0.93580 0.97367 1.22010 0.97557 0.97089 0.99445 1.21120 0.95380 0.89827 0.92128 1.44503 1.33003 1.06487 1.50622 1.18884 0.92991 0.83294 1.42620 0.93387 1.25916 1.02187 0.94988 1.00108 1.69973 1.35917 1.06971 1.47643 0.85859 0.81737 0.75647 0.78877 1.19880 1.24020 1.18842 1.21419 0.89208 0.96318 0.93823 1.21939 1.01032 0.95003 0.97821 1.73443 1.19102 1.04318 1.14115 1.45800 1.43746 1.07284 1.09531 1.22641 1.06422 1.02631 0.75071 0.93408 0.92736 0.89800 0.87961 0.88282 0.82473 0.74881 0.91777 0.91632 0.89561 0.90830 0.90739 0.92995 0.90214 0.94985 0.93228 0.93004 0.95104 0.93517 0.89873 0.92757 0.87810 0.85840 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.89 71.98 0.71 0.00 16 2 C -0.05 -0.26 6.00 29.84 0.18 -0.08 16 3 C 0.03 0.35 6.17 41.40 0.26 0.61 16 4 C -0.20 -4.19 10.73 22.41 0.24 -3.95 16 5 C -0.04 -1.05 7.13 42.46 0.30 -0.75 16 6 C 0.60 16.65 7.82 86.75 0.68 17.33 16 7 O -0.57 -19.87 16.93 -3.92 -0.07 -19.93 16 8 N -0.71 -16.12 5.55 -466.08 -2.59 -18.71 16 9 C 0.12 2.80 5.43 86.38 0.47 3.27 16 10 C -0.11 -2.31 4.80 30.60 0.15 -2.17 16 11 C -0.07 -1.95 2.15 -10.76 -0.02 -1.97 16 12 C -0.12 -3.85 5.15 30.67 0.16 -3.69 16 13 C 0.14 5.60 6.52 86.36 0.56 6.16 16 14 N -0.62 -30.10 2.77 -699.09 -1.94 -32.04 16 15 C -0.25 -14.58 10.03 84.03 0.84 -13.73 16 16 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 17 C -0.04 -2.26 5.23 84.86 0.44 -1.82 16 18 N -0.96 -61.71 13.97 21.65 0.30 -61.40 16 19 Si 0.95 47.86 24.35 68.60 1.67 49.53 16 20 H -0.27 -12.84 6.62 99.48 0.66 -12.18 16 21 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 22 H -0.26 -12.82 6.64 99.48 0.66 -12.16 16 23 C 0.12 5.00 4.20 86.36 0.36 5.36 16 24 C -0.12 -3.86 5.36 30.67 0.16 -3.70 16 25 N -0.27 -5.47 11.67 -48.17 -0.56 -6.04 16 26 N -0.27 -3.72 3.70 -355.92 -1.32 -5.04 16 27 C 0.07 0.21 10.90 127.77 1.39 1.61 16 28 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.10 0.00 7.42 -2.39 -0.02 -0.02 16 32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 34 H 0.41 7.84 8.20 -92.71 -0.76 7.07 16 35 H 0.06 1.63 6.54 -2.39 -0.02 1.62 16 36 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 40 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.17 6.50 -2.39 -0.02 2.15 16 42 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 44 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 45 H 0.03 1.28 7.08 -2.39 -0.02 1.26 16 46 H 0.05 2.21 4.50 -2.39 -0.01 2.20 16 47 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 48 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.10 0.00 8.14 -2.38 -0.02 -0.02 16 50 H 0.12 -0.31 7.44 -2.39 -0.02 -0.33 16 51 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -80.84 400.82 2.45 -78.38 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.06 Total: 12.77 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 6.89 Total: 2.48 kcal Atomic # 7 Polarization: -117.12 SS G_CDS: -6.10 Total: -123.22 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.07 Total: -19.93 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 1.67 Total: 49.53 kcal Total: -80.84 2.45 -78.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495539405.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.588 kcal (2) G-P(sol) polarization free energy of solvation -80.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds