Wall clock time and date at job start Tue Mar 31 2020 19:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47241 * 2 1 4 4 C 1.50698 * 109.47173 * 180.02562 * 3 2 1 5 5 N 1.30445 * 125.99193 * 270.17482 * 4 3 2 6 6 N 1.39932 * 108.89953 * 180.26136 * 5 4 3 7 7 H 0.96998 * 125.75747 * 179.73076 * 6 5 4 8 8 C 1.34258 * 108.49111 * 359.74049 * 6 5 4 9 9 C 1.38042 * 107.41485 * 359.97438 * 8 6 5 10 10 C 1.47437 * 126.41234 * 179.97438 * 9 8 6 11 11 O 1.21598 * 119.99735 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99912 * 0.03244 * 10 9 8 13 13 C 1.46500 * 119.99955 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47175 * 325.00036 * 13 12 10 15 15 C 1.52997 * 109.47204 * 85.00142 * 13 12 10 16 16 C 1.53002 * 109.46978 * 59.99799 * 15 13 12 17 17 C 1.52996 * 109.46891 * 60.00410 * 16 15 13 18 18 C 1.53000 * 109.47328 * 299.99597 * 17 16 15 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 16 20 20 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 21 21 C 1.52992 * 109.47482 * 180.02562 * 19 18 17 22 22 N 1.46497 * 109.47408 * 295.00294 * 21 19 18 23 23 C 1.36934 * 120.00520 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00170 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00307 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00086 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00046 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47260 * 359.97438 * 27 25 23 29 29 H 1.48507 * 109.46863 * 120.00109 * 27 25 23 30 30 H 1.48496 * 109.47075 * 239.99734 * 27 25 23 31 31 H 1.09001 * 109.47457 * 59.99296 * 1 2 3 32 32 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46540 * 299.99474 * 1 2 3 34 34 H 1.09009 * 109.46540 * 240.00526 * 2 1 3 35 35 H 1.09001 * 109.47457 * 120.00704 * 2 1 3 36 36 H 1.08994 * 109.46543 * 60.00465 * 3 2 1 37 37 H 1.08997 * 109.46991 * 300.00770 * 3 2 1 38 38 H 1.07998 * 126.29204 * 179.97438 * 8 6 5 39 39 H 0.97001 * 120.00163 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47045 * 299.99966 * 15 13 12 41 41 H 1.09001 * 109.47375 * 179.97438 * 15 13 12 42 42 H 1.08992 * 109.47056 * 300.00064 * 16 15 13 43 43 H 1.09004 * 109.47006 * 180.02562 * 16 15 13 44 44 H 1.09004 * 109.47368 * 179.97438 * 17 16 15 45 45 H 1.09001 * 109.47372 * 59.99964 * 17 16 15 46 46 H 1.09002 * 109.47398 * 180.02562 * 18 17 16 47 47 H 1.09001 * 109.47194 * 300.00476 * 18 17 16 48 48 H 1.09002 * 109.46906 * 55.00224 * 21 19 18 49 49 H 1.09006 * 109.47717 * 174.99599 * 21 19 18 50 50 H 0.97008 * 119.99817 * 359.97438 * 22 21 19 51 51 H 0.96994 * 120.00308 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3141 1.4391 1.0545 6 7 5.6514 1.4464 0.6427 7 1 6.4247 1.4495 1.2281 8 6 5.6836 1.4487 -0.6995 9 6 4.3768 1.4422 -1.1442 10 6 3.9304 1.4425 -2.5494 11 8 2.7427 1.4368 -2.8100 12 7 4.8388 1.4489 -3.5449 13 6 4.3953 1.4486 -4.9412 14 1 3.4862 0.8544 -5.0335 15 6 4.1134 2.8847 -5.3871 16 6 5.3895 3.7188 -5.2574 17 6 6.4843 3.1163 -6.1402 18 6 6.7663 1.6802 -5.6944 19 6 5.4903 0.8461 -5.8239 20 1 5.1602 0.8458 -6.8627 21 6 5.7720 -0.5899 -5.3776 22 7 6.7331 -1.2069 -6.2950 23 6 7.1392 -2.4991 -6.0940 24 1 6.7507 -3.0636 -5.2592 25 6 8.0495 -3.0838 -6.9637 26 7 8.5226 -2.3961 -7.9813 27 14 8.6040 -4.8463 -6.6889 28 1 7.9313 -5.3948 -5.4841 29 1 8.2467 -5.6679 -7.8733 30 1 10.0754 -4.8771 -6.4909 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6768 1.9562 0.8900 37 1 1.6766 1.9563 -0.8899 38 1 6.5692 1.4545 -1.3177 39 1 5.7863 1.4537 -3.3370 40 1 3.3334 3.3139 -4.7582 41 1 3.7839 2.8846 -6.4261 42 1 5.7194 3.7190 -4.2186 43 1 5.1886 4.7421 -5.5747 44 1 7.3934 3.7108 -6.0483 45 1 6.1544 3.1161 -7.1791 46 1 7.5466 1.2511 -6.3230 47 1 7.0963 1.6804 -4.6555 48 1 6.1857 -0.5823 -4.3691 49 1 4.8439 -1.1616 -5.3851 50 1 7.0818 -0.7000 -7.0450 51 1 9.1584 -2.8048 -8.5892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498484237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:11 Heat of formation + Delta-G solvation = 13.087529 kcal Electronic energy + Delta-G solvation = -29820.913186 eV Core-core repulsion = 25948.578727 eV Total energy + Delta-G solvation = -3872.334460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.60671 -39.94008 -37.85137 -35.33356 -34.63908 -33.53422 -31.92558 -31.74277 -30.91293 -29.68493 -29.02521 -27.19379 -25.23658 -23.54650 -22.95195 -22.23924 -21.97781 -20.90181 -20.46459 -19.68719 -18.88177 -18.55109 -17.16944 -16.51644 -15.54515 -15.40930 -15.17735 -15.05562 -14.65074 -14.54610 -14.48000 -14.07340 -13.76845 -13.62236 -13.35165 -13.23553 -13.08281 -13.05150 -12.71852 -12.09433 -12.04685 -11.93814 -11.64502 -11.61953 -11.39139 -11.33199 -11.11249 -10.90336 -10.89634 -10.72032 -10.65378 -10.34204 -10.17840 -9.96439 -9.83850 -9.72759 -9.64946 -9.60241 -9.04147 -8.89113 -8.70543 -6.92055 -5.78062 -3.06036 1.35067 2.04226 2.49327 3.39004 3.41719 3.48075 3.49859 3.52313 4.29704 4.45853 4.56795 4.84670 4.90389 4.92877 4.95183 5.04055 5.09200 5.20399 5.24713 5.32411 5.36337 5.43591 5.56886 5.63247 5.65674 5.68019 5.72511 5.74948 5.78183 5.82628 5.86035 5.97600 6.08668 6.16809 6.19843 6.21018 6.24921 6.27592 6.30046 6.35513 6.40872 6.49290 6.66997 6.69148 6.82790 6.86938 6.90744 7.34283 7.69687 7.72448 8.41290 8.43821 9.52653 10.10836 10.45515 11.44885 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.003271 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.773245 B = 8557.919816 C = 9762.775324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.044 4.044 4 C 0.138 3.862 5 N -0.301 5.301 6 N -0.462 5.462 7 H 0.443 0.557 8 C 0.105 3.895 9 C -0.283 4.283 10 C 0.593 3.407 11 O -0.543 6.543 12 N -0.714 5.714 13 C 0.158 3.842 14 H 0.089 0.911 15 C -0.128 4.128 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.109 4.109 19 C -0.102 4.102 20 H 0.085 0.915 21 C 0.161 3.839 22 N -0.731 5.731 23 C -0.237 4.237 24 H 0.069 0.931 25 C -0.014 4.014 26 N -0.933 5.933 27 Si 0.905 3.095 28 H -0.281 1.281 29 H -0.291 1.291 30 H -0.292 1.292 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.185 0.815 39 H 0.396 0.604 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.052 0.948 48 H 0.017 0.983 49 H 0.018 0.982 50 H 0.384 0.616 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.943 13.920 14.351 21.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.083 4.083 4 C -0.030 4.030 5 N -0.123 5.123 6 N -0.166 5.166 7 H 0.288 0.712 8 C -0.048 4.048 9 C -0.298 4.298 10 C 0.380 3.620 11 O -0.421 6.421 12 N -0.365 5.365 13 C 0.053 3.947 14 H 0.107 0.893 15 C -0.166 4.166 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.147 4.147 19 C -0.121 4.121 20 H 0.103 0.897 21 C 0.033 3.967 22 N -0.376 5.376 23 C -0.368 4.368 24 H 0.087 0.913 25 C -0.210 4.210 26 N -0.582 5.582 27 Si 0.736 3.264 28 H -0.206 1.206 29 H -0.219 1.219 30 H -0.219 1.219 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.202 0.798 39 H 0.231 0.769 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.071 0.929 48 H 0.035 0.965 49 H 0.036 0.964 50 H 0.218 0.782 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.746 13.739 15.499 22.483 hybrid contribution 1.714 -0.901 -0.649 2.043 sum -7.031 12.838 14.850 20.851 Atomic orbital electron populations 1.21732 0.95389 1.01658 1.01817 1.21372 0.95926 0.95405 1.02308 1.20215 0.85301 0.98734 1.04028 1.22462 0.97059 0.94812 0.88689 1.77150 0.86220 1.26415 1.22526 1.46095 1.07839 1.57230 1.05470 0.71216 1.23201 0.99173 0.96733 0.85702 1.20370 0.91973 1.22538 0.94895 1.17192 0.85736 0.75669 0.83385 1.90723 1.16196 1.50960 1.84208 1.45938 1.09404 1.75212 1.05968 1.20923 0.98124 0.96033 0.79633 0.89333 1.21902 0.97714 0.95410 1.01623 1.21482 0.95466 0.98391 0.99915 1.21588 0.98106 0.96435 0.99718 1.21518 0.97939 0.94045 1.01168 1.21630 0.94607 0.96022 0.99867 0.89675 1.20633 0.92954 0.89740 0.93362 1.42382 1.50634 1.12925 1.31620 1.19265 1.19449 0.89296 1.08786 0.91284 1.24715 1.00222 0.98277 0.97779 1.69660 1.35152 1.36328 1.17099 0.86148 0.78104 0.84853 0.77295 1.20612 1.21855 1.21936 0.92240 0.92734 0.92981 0.91262 0.92389 0.90830 0.87982 0.79785 0.76886 0.91651 0.91130 0.92372 0.92591 0.92383 0.91903 0.90341 0.92907 0.96515 0.96407 0.78230 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 37.16 0.37 -1.02 16 2 C -0.11 -1.23 5.92 -26.73 -0.16 -1.39 16 3 C -0.04 -0.49 5.25 -27.88 -0.15 -0.64 16 4 C 0.14 1.71 6.52 -82.02 -0.53 1.18 16 5 N -0.30 -3.58 12.63 33.89 0.43 -3.15 16 6 N -0.46 -4.01 7.29 30.85 0.22 -3.78 16 7 H 0.44 2.26 8.96 -182.73 -1.64 0.62 16 8 C 0.10 0.94 11.52 -16.56 -0.19 0.75 16 9 C -0.28 -3.41 6.13 -105.06 -0.64 -4.06 16 10 C 0.59 8.07 7.78 -12.52 -0.10 7.97 16 11 O -0.54 -8.76 14.58 5.28 0.08 -8.68 16 12 N -0.71 -8.69 3.60 -54.88 -0.20 -8.89 16 13 C 0.16 2.09 2.23 -67.93 -0.15 1.93 16 14 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 15 C -0.13 -1.49 5.60 -26.73 -0.15 -1.64 16 16 C -0.11 -1.21 5.77 -26.73 -0.15 -1.36 16 17 C -0.12 -1.37 5.92 -26.73 -0.16 -1.53 16 18 C -0.11 -1.48 4.90 -26.73 -0.13 -1.62 16 19 C -0.10 -1.52 2.02 -90.62 -0.18 -1.70 16 20 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 21 C 0.16 3.09 5.42 -4.05 -0.02 3.07 16 22 N -0.73 -17.81 5.33 -59.91 -0.32 -18.13 16 23 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 24 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 25 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 26 N -0.93 -27.72 13.06 55.49 0.72 -27.00 16 27 Si 0.90 22.24 29.55 -169.99 -5.02 17.22 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 30 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 1.26 6.56 -51.93 -0.34 0.92 16 38 H 0.19 1.03 7.46 -52.49 -0.39 0.63 16 39 H 0.40 4.22 5.59 -40.82 -0.23 3.99 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.60 7.60 -51.93 -0.39 0.20 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 1.29 7.18 -51.93 -0.37 0.92 16 47 H 0.05 0.66 6.51 -51.93 -0.34 0.32 16 48 H 0.02 0.32 7.61 -51.93 -0.39 -0.07 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 51 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -33.24 401.62 -10.45 -43.69 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: -9.81 Total: 9.89 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -2.60 Total: -7.23 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 0.86 Total: -60.95 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.08 Total: -8.68 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.24 -10.45 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498484237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.775 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds