Wall clock time and date at job start Tue Mar 31 2020 19:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47241 * 2 1 4 4 C 1.50698 * 109.47173 * 180.02562 * 3 2 1 5 5 N 1.30445 * 125.99193 * 270.17482 * 4 3 2 6 6 N 1.39932 * 108.89953 * 180.26136 * 5 4 3 7 7 H 0.96998 * 125.75747 * 179.73076 * 6 5 4 8 8 C 1.34258 * 108.49111 * 359.74049 * 6 5 4 9 9 C 1.38042 * 107.41485 * 359.97438 * 8 6 5 10 10 C 1.47437 * 126.41234 * 179.97438 * 9 8 6 11 11 O 1.21598 * 119.99735 * 180.02562 * 10 9 8 12 12 N 1.34773 * 119.99912 * 0.03244 * 10 9 8 13 13 C 1.46500 * 119.99955 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.47175 * 325.00036 * 13 12 10 15 15 C 1.52997 * 109.47204 * 85.00142 * 13 12 10 16 16 C 1.53002 * 109.46978 * 59.99799 * 15 13 12 17 17 C 1.52996 * 109.46891 * 60.00410 * 16 15 13 18 18 C 1.53000 * 109.47328 * 299.99597 * 17 16 15 19 19 C 1.52997 * 109.47060 * 60.00126 * 18 17 16 20 20 H 1.08998 * 109.47533 * 59.99948 * 19 18 17 21 21 C 1.52992 * 109.47482 * 180.02562 * 19 18 17 22 22 N 1.46497 * 109.47408 * 295.00294 * 21 19 18 23 23 C 1.36934 * 120.00520 * 179.97438 * 22 21 19 24 24 H 1.08002 * 120.00170 * 0.02562 * 23 22 21 25 25 C 1.38810 * 120.00307 * 179.97438 * 23 22 21 26 26 N 1.31621 * 120.00086 * 0.02562 * 25 23 22 27 27 Si 1.86799 * 120.00046 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47260 * 359.97438 * 27 25 23 29 29 H 1.48507 * 109.46863 * 120.00109 * 27 25 23 30 30 H 1.48496 * 109.47075 * 239.99734 * 27 25 23 31 31 H 1.09001 * 109.47457 * 59.99296 * 1 2 3 32 32 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46540 * 299.99474 * 1 2 3 34 34 H 1.09009 * 109.46540 * 240.00526 * 2 1 3 35 35 H 1.09001 * 109.47457 * 120.00704 * 2 1 3 36 36 H 1.08994 * 109.46543 * 60.00465 * 3 2 1 37 37 H 1.08997 * 109.46991 * 300.00770 * 3 2 1 38 38 H 1.07998 * 126.29204 * 179.97438 * 8 6 5 39 39 H 0.97001 * 120.00163 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47045 * 299.99966 * 15 13 12 41 41 H 1.09001 * 109.47375 * 179.97438 * 15 13 12 42 42 H 1.08992 * 109.47056 * 300.00064 * 16 15 13 43 43 H 1.09004 * 109.47006 * 180.02562 * 16 15 13 44 44 H 1.09004 * 109.47368 * 179.97438 * 17 16 15 45 45 H 1.09001 * 109.47372 * 59.99964 * 17 16 15 46 46 H 1.09002 * 109.47398 * 180.02562 * 18 17 16 47 47 H 1.09001 * 109.47194 * 300.00476 * 18 17 16 48 48 H 1.09002 * 109.46906 * 55.00224 * 21 19 18 49 49 H 1.09006 * 109.47717 * 174.99599 * 21 19 18 50 50 H 0.97008 * 119.99817 * 359.97438 * 22 21 19 51 51 H 0.96994 * 120.00308 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 7 4.3141 1.4391 1.0545 6 7 5.6514 1.4464 0.6427 7 1 6.4247 1.4495 1.2281 8 6 5.6836 1.4487 -0.6995 9 6 4.3768 1.4422 -1.1442 10 6 3.9304 1.4425 -2.5494 11 8 2.7427 1.4368 -2.8100 12 7 4.8388 1.4489 -3.5449 13 6 4.3953 1.4486 -4.9412 14 1 3.4862 0.8544 -5.0335 15 6 4.1134 2.8847 -5.3871 16 6 5.3895 3.7188 -5.2574 17 6 6.4843 3.1163 -6.1402 18 6 6.7663 1.6802 -5.6944 19 6 5.4903 0.8461 -5.8239 20 1 5.1602 0.8458 -6.8627 21 6 5.7720 -0.5899 -5.3776 22 7 6.7331 -1.2069 -6.2950 23 6 7.1392 -2.4991 -6.0940 24 1 6.7507 -3.0636 -5.2592 25 6 8.0495 -3.0838 -6.9637 26 7 8.5226 -2.3961 -7.9813 27 14 8.6040 -4.8463 -6.6889 28 1 7.9313 -5.3948 -5.4841 29 1 8.2467 -5.6679 -7.8733 30 1 10.0754 -4.8771 -6.4909 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 1.6768 1.9562 0.8900 37 1 1.6766 1.9563 -0.8899 38 1 6.5692 1.4545 -1.3177 39 1 5.7863 1.4537 -3.3370 40 1 3.3334 3.3139 -4.7582 41 1 3.7839 2.8846 -6.4261 42 1 5.7194 3.7190 -4.2186 43 1 5.1886 4.7421 -5.5747 44 1 7.3934 3.7108 -6.0483 45 1 6.1544 3.1161 -7.1791 46 1 7.5466 1.2511 -6.3230 47 1 7.0963 1.6804 -4.6555 48 1 6.1857 -0.5823 -4.3691 49 1 4.8439 -1.1616 -5.3851 50 1 7.0818 -0.7000 -7.0450 51 1 9.1584 -2.8048 -8.5892 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498484237.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:09 Heat of formation + Delta-G solvation = -7.819056 kcal Electronic energy + Delta-G solvation = -29821.819764 eV Core-core repulsion = 25948.578727 eV Total energy + Delta-G solvation = -3873.241037 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.44867 -41.02130 -38.97340 -36.44469 -36.15970 -34.57417 -33.68090 -32.56230 -31.85423 -31.19640 -30.11609 -28.02579 -26.90559 -24.64906 -24.47957 -23.25263 -22.87202 -22.01088 -21.61382 -20.60023 -19.90205 -19.55212 -19.00855 -17.53177 -16.80282 -16.47355 -16.33986 -16.11048 -15.99511 -15.62495 -15.37624 -15.18801 -15.13676 -14.95376 -14.77210 -14.49693 -14.22607 -13.96897 -13.91465 -13.37397 -13.04963 -12.97608 -12.88959 -12.80498 -12.68723 -12.54355 -12.45062 -12.16121 -12.06940 -11.96722 -11.88540 -11.82104 -11.55396 -11.36079 -11.13205 -11.00078 -10.81536 -10.73912 -10.50741 -10.01933 -9.67378 -8.96243 -7.94075 -5.21644 0.56638 1.11413 1.47034 1.48210 1.57629 1.80992 2.37497 2.53177 2.56272 3.39604 3.46670 3.65385 3.74577 3.85439 3.90759 4.12149 4.13777 4.17230 4.22873 4.30208 4.38101 4.42499 4.48348 4.53410 4.58317 4.61448 4.64839 4.75372 4.80347 4.85956 4.90078 4.97322 5.00861 5.07943 5.14123 5.16007 5.24510 5.32742 5.34867 5.36249 5.40690 5.43147 5.47373 5.50124 5.55134 5.58453 5.71561 6.26465 6.28790 6.50677 6.75198 7.35810 7.42194 8.12013 8.36276 9.29359 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.003271 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.773245 B = 8557.919816 C = 9762.775324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.041 4.041 4 C 0.124 3.876 5 N -0.322 5.322 6 N -0.447 5.447 7 H 0.460 0.540 8 C 0.130 3.870 9 C -0.315 4.315 10 C 0.592 3.408 11 O -0.576 6.576 12 N -0.705 5.705 13 C 0.166 3.834 14 H 0.066 0.934 15 C -0.122 4.122 16 C -0.107 4.107 17 C -0.114 4.114 18 C -0.103 4.103 19 C -0.088 4.088 20 H 0.075 0.925 21 C 0.162 3.838 22 N -0.740 5.740 23 C -0.242 4.242 24 H 0.070 0.930 25 C -0.071 4.071 26 N -0.966 5.966 27 Si 0.968 3.032 28 H -0.270 1.270 29 H -0.295 1.295 30 H -0.291 1.291 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.223 0.777 39 H 0.405 0.595 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.048 0.952 47 H 0.068 0.932 48 H 0.027 0.973 49 H 0.001 0.999 50 H 0.376 0.624 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.041 14.834 15.873 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.080 4.080 4 C -0.044 4.044 5 N -0.144 5.144 6 N -0.153 5.153 7 H 0.308 0.692 8 C -0.025 4.025 9 C -0.330 4.330 10 C 0.381 3.619 11 O -0.456 6.456 12 N -0.357 5.357 13 C 0.061 3.939 14 H 0.084 0.916 15 C -0.160 4.160 16 C -0.145 4.145 17 C -0.151 4.151 18 C -0.141 4.141 19 C -0.108 4.108 20 H 0.093 0.907 21 C 0.036 3.964 22 N -0.383 5.383 23 C -0.374 4.374 24 H 0.088 0.912 25 C -0.264 4.264 26 N -0.617 5.617 27 Si 0.798 3.202 28 H -0.195 1.195 29 H -0.222 1.222 30 H -0.218 1.218 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.239 0.761 39 H 0.242 0.758 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.019 0.981 50 H 0.209 0.791 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.837 14.664 17.077 23.835 hybrid contribution 1.429 -1.190 -1.074 2.147 sum -6.408 13.474 16.003 21.880 Atomic orbital electron populations 1.21710 0.94082 1.02170 1.02284 1.21302 0.97069 0.95104 1.00994 1.20166 0.85371 0.98654 1.03838 1.22615 0.97524 0.95108 0.89114 1.77091 0.87510 1.27165 1.22678 1.46134 1.07530 1.55765 1.05845 0.69171 1.23677 0.99159 0.93787 0.85868 1.20347 0.93468 1.25331 0.93898 1.17429 0.85347 0.74961 0.84155 1.90705 1.17614 1.52543 1.84759 1.45802 1.09756 1.74929 1.05247 1.20717 0.96346 0.96833 0.80008 0.91612 1.21839 0.98440 0.94106 1.01649 1.21437 0.94075 0.98750 1.00212 1.21531 0.99153 0.94819 0.99643 1.21446 0.95937 0.95126 1.01610 1.21453 0.96052 0.93727 0.99519 0.90704 1.20740 0.90927 0.91829 0.92920 1.42541 1.51293 1.12248 1.32193 1.19602 1.18857 0.90559 1.08393 0.91229 1.25468 1.00929 1.02062 0.97922 1.69800 1.35982 1.37854 1.18053 0.85154 0.77501 0.80368 0.77226 1.19453 1.22221 1.21788 0.92859 0.92208 0.91390 0.93818 0.92264 0.89589 0.89432 0.76059 0.75771 0.92197 0.90735 0.91556 0.90958 0.90856 0.92269 0.93332 0.91299 0.95543 0.98112 0.79110 0.94009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.91 71.98 0.71 -1.97 16 2 C -0.11 -2.39 5.92 30.59 0.18 -2.21 16 3 C -0.04 -0.94 5.25 29.85 0.16 -0.78 16 4 C 0.12 3.01 6.52 43.51 0.28 3.30 16 5 N -0.32 -7.19 12.63 -46.68 -0.59 -7.78 16 6 N -0.45 -6.59 7.29 -56.32 -0.41 -7.00 16 7 H 0.46 3.27 8.96 -213.43 -1.91 1.36 16 8 C 0.13 1.95 11.52 84.28 0.97 2.92 16 9 C -0.32 -7.25 6.13 -20.15 -0.12 -7.38 16 10 C 0.59 15.88 7.78 86.67 0.67 16.55 16 11 O -0.58 -19.04 14.58 -4.02 -0.06 -19.10 16 12 N -0.71 -16.36 3.60 -445.80 -1.61 -17.97 16 13 C 0.17 4.33 2.23 44.99 0.10 4.43 16 14 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 15 C -0.12 -2.68 5.60 30.59 0.17 -2.51 16 16 C -0.11 -1.95 5.77 30.59 0.18 -1.78 16 17 C -0.11 -2.33 5.92 30.59 0.18 -2.15 16 18 C -0.10 -2.68 4.90 30.59 0.15 -2.53 16 19 C -0.09 -2.61 2.02 -10.79 -0.02 -2.63 16 20 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 21 C 0.16 6.26 5.42 86.38 0.47 6.73 16 22 N -0.74 -36.39 5.33 -343.46 -1.83 -38.22 16 23 C -0.24 -13.36 9.99 84.03 0.84 -12.52 16 24 H 0.07 3.76 7.83 -2.91 -0.02 3.74 16 25 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 26 N -0.97 -57.95 13.06 21.65 0.28 -57.67 16 27 Si 0.97 45.73 29.55 68.60 2.03 47.76 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 29 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 30 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 31 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 2.25 6.56 -2.39 -0.02 2.24 16 38 H 0.22 1.50 7.46 -2.91 -0.02 1.47 16 39 H 0.41 7.68 5.59 -92.71 -0.52 7.16 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.13 7.60 -2.39 -0.02 1.11 16 43 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.05 1.58 7.18 -2.39 -0.02 1.56 16 47 H 0.07 1.54 6.51 -2.39 -0.02 1.53 16 48 H 0.03 0.98 7.61 -2.39 -0.02 0.97 16 49 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 50 H 0.38 19.52 6.85 -92.70 -0.64 18.88 16 51 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -72.72 401.62 1.09 -71.63 By element: Atomic # 1 Polarization: 36.56 SS G_CDS: -2.12 Total: 34.44 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 5.39 Total: -6.09 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -4.15 Total: -128.64 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.06 Total: -19.10 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.76 kcal Total: -72.72 1.09 -71.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498484237.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.814 kcal (2) G-P(sol) polarization free energy of solvation -72.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds