Wall clock time and date at job start Tue Mar 31 2020 19:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47295 * 2 1 4 4 C 1.50698 * 109.47415 * 180.02562 * 3 2 1 5 5 N 1.30451 * 125.99006 * 270.16521 * 4 3 2 6 6 N 1.39930 * 108.89720 * 180.26206 * 5 4 3 7 7 H 0.96998 * 125.75353 * 179.73512 * 6 5 4 8 8 C 1.34265 * 108.49325 * 359.74371 * 6 5 4 9 9 C 1.38039 * 107.41665 * 359.97438 * 8 6 5 10 10 C 1.47421 * 126.41795 * 179.97438 * 9 8 6 11 11 O 1.21604 * 120.00449 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99990 * 0.02562 * 10 9 8 13 13 C 1.46498 * 120.00276 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46761 * 35.00601 * 13 12 10 15 15 C 1.52996 * 109.47119 * 275.00139 * 13 12 10 16 16 C 1.53001 * 109.47238 * 299.99906 * 15 13 12 17 17 C 1.53007 * 109.46923 * 300.00062 * 16 15 13 18 18 C 1.53003 * 109.46963 * 60.00343 * 17 16 15 19 19 C 1.53001 * 109.47020 * 299.99597 * 18 17 16 20 20 H 1.09008 * 109.46939 * 300.00621 * 19 18 17 21 21 C 1.52996 * 109.47238 * 180.02562 * 19 18 17 22 22 N 1.46498 * 109.47059 * 64.99625 * 21 19 18 23 23 C 1.36943 * 119.99752 * 179.72430 * 22 21 19 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 21 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 21 26 26 N 1.31611 * 120.00081 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99814 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47483 * 90.00178 * 27 25 23 29 29 H 1.48498 * 109.47011 * 210.00042 * 27 25 23 30 30 H 1.48502 * 109.47495 * 329.99664 * 27 25 23 31 31 H 1.08998 * 109.47608 * 60.00266 * 1 2 3 32 32 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46962 * 299.99983 * 1 2 3 34 34 H 1.08999 * 109.47395 * 239.99702 * 2 1 3 35 35 H 1.08998 * 109.47608 * 119.99734 * 2 1 3 36 36 H 1.08999 * 109.47143 * 59.99548 * 3 2 1 37 37 H 1.09002 * 109.47013 * 300.00164 * 3 2 1 38 38 H 1.07993 * 126.28778 * 180.02562 * 8 6 5 39 39 H 0.97002 * 119.99865 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.46987 * 60.00124 * 15 13 12 41 41 H 1.09003 * 109.46613 * 179.97438 * 15 13 12 42 42 H 1.08994 * 109.47016 * 59.99904 * 16 15 13 43 43 H 1.09001 * 109.46786 * 180.02562 * 16 15 13 44 44 H 1.08997 * 109.46534 * 179.97438 * 17 16 15 45 45 H 1.08994 * 109.47145 * 299.99763 * 17 16 15 46 46 H 1.09001 * 109.46736 * 179.97438 * 18 17 16 47 47 H 1.08995 * 109.47226 * 59.99434 * 18 17 16 48 48 H 1.09004 * 109.47066 * 304.99893 * 21 19 18 49 49 H 1.08994 * 109.46974 * 185.00040 * 21 19 18 50 50 H 0.97001 * 120.00384 * 0.02562 * 22 21 19 51 51 H 0.97008 * 120.00329 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.3140 1.4393 1.0545 6 7 5.6513 1.4466 0.6427 7 1 6.4246 1.4498 1.2282 8 6 5.6836 1.4487 -0.6995 9 6 4.3768 1.4422 -1.1443 10 6 3.9304 1.4423 -2.5493 11 8 2.7427 1.4366 -2.8100 12 7 4.8389 1.4488 -3.5450 13 6 4.3954 1.4494 -4.9412 14 1 3.4802 2.0347 -5.0314 15 6 4.1281 0.0120 -5.3921 16 6 5.4127 -0.8094 -5.2655 17 6 6.5013 -0.1926 -6.1461 18 6 6.7686 1.2448 -5.6951 19 6 5.4841 2.0662 -5.8217 20 1 5.1540 2.0667 -6.8607 21 6 5.7514 3.5037 -5.3713 22 7 6.7058 4.1330 -6.2875 23 6 7.0942 5.4307 -6.0864 24 1 6.7003 5.9887 -5.2498 25 6 7.9942 6.0288 -6.9577 26 7 8.3678 7.2758 -6.7642 27 14 8.6748 5.0637 -8.4050 28 1 7.7913 5.2502 -9.5839 29 1 10.0398 5.5517 -8.7274 30 1 8.7347 3.6219 -8.0545 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 6.5691 1.4537 -1.3176 39 1 5.7863 1.4529 -3.3370 40 1 3.3525 -0.4273 -4.7648 41 1 3.7977 0.0127 -6.4309 42 1 5.7427 -0.8099 -4.2267 43 1 5.2223 -1.8333 -5.5871 44 1 7.4166 -0.7776 -6.0555 45 1 6.1714 -0.1922 -7.1849 46 1 7.5445 1.6839 -6.3222 47 1 7.0985 1.2442 -4.6563 48 1 6.1657 3.4975 -4.3631 49 1 4.8176 4.0658 -5.3770 50 1 7.0593 3.6318 -7.0390 51 1 8.9970 7.6937 -7.3729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498484241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:24 Heat of formation + Delta-G solvation = 17.362243 kcal Electronic energy + Delta-G solvation = -29865.307546 eV Core-core repulsion = 25993.158452 eV Total energy + Delta-G solvation = -3872.149094 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.62205 -40.02643 -37.93288 -35.37589 -34.83668 -33.60508 -31.98708 -31.76742 -30.97363 -30.08256 -29.20035 -27.22467 -25.49189 -23.59851 -22.74146 -22.22634 -22.02309 -20.93160 -20.57898 -19.71699 -18.96390 -18.61851 -17.61267 -16.59618 -15.62492 -15.43899 -15.26713 -15.05716 -14.79560 -14.57493 -14.38195 -14.15449 -14.01705 -13.69517 -13.44523 -13.42229 -13.11231 -12.89514 -12.79409 -12.28773 -12.11476 -12.08836 -11.78460 -11.65835 -11.58407 -11.38664 -11.14840 -11.09593 -10.99966 -10.81283 -10.70293 -10.48325 -10.26315 -10.02306 -9.93655 -9.75192 -9.66666 -9.58649 -9.07158 -8.91873 -8.75904 -7.24103 -5.78382 -3.13741 1.33529 2.02847 2.48360 3.33182 3.33809 3.37160 3.42923 3.49236 4.27613 4.44188 4.56803 4.69351 4.79729 4.83595 4.88422 4.98968 5.04119 5.11078 5.17345 5.23755 5.25702 5.40313 5.50373 5.51269 5.54975 5.58573 5.65379 5.66780 5.70812 5.73498 5.78559 5.80033 5.92939 5.99433 6.08763 6.11499 6.16224 6.17756 6.21140 6.26323 6.34408 6.36818 6.47694 6.60358 6.70614 6.77652 6.86870 7.32993 7.66836 7.98511 8.39500 8.40681 9.20068 9.92250 10.12189 11.40195 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.003077 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.775332 B = 9097.582409 C = 9944.279997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C -0.045 4.045 4 C 0.139 3.861 5 N -0.300 5.300 6 N -0.462 5.462 7 H 0.444 0.556 8 C 0.105 3.895 9 C -0.283 4.283 10 C 0.594 3.406 11 O -0.541 6.541 12 N -0.715 5.715 13 C 0.159 3.841 14 H 0.091 0.909 15 C -0.128 4.128 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.112 4.112 19 C -0.107 4.107 20 H 0.085 0.915 21 C 0.165 3.835 22 N -0.755 5.755 23 C -0.242 4.242 24 H 0.089 0.911 25 C 0.003 3.997 26 N -0.935 5.935 27 Si 0.884 3.116 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.277 1.277 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.185 0.815 39 H 0.396 0.604 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.025 0.975 49 H 0.027 0.973 50 H 0.360 0.640 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 -19.753 11.825 24.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.085 4.085 4 C -0.030 4.030 5 N -0.122 5.122 6 N -0.166 5.166 7 H 0.288 0.712 8 C -0.048 4.048 9 C -0.298 4.298 10 C 0.381 3.619 11 O -0.420 6.420 12 N -0.367 5.367 13 C 0.054 3.946 14 H 0.109 0.891 15 C -0.167 4.167 16 C -0.153 4.153 17 C -0.159 4.159 18 C -0.149 4.149 19 C -0.126 4.126 20 H 0.103 0.897 21 C 0.038 3.962 22 N -0.401 5.401 23 C -0.372 4.372 24 H 0.107 0.893 25 C -0.192 4.192 26 N -0.583 5.583 27 Si 0.715 3.285 28 H -0.211 1.211 29 H -0.218 1.218 30 H -0.203 1.203 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.121 0.879 38 H 0.202 0.798 39 H 0.231 0.769 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.043 0.957 49 H 0.045 0.955 50 H 0.193 0.807 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.506 -19.516 13.004 24.947 hybrid contribution 1.829 -0.437 -1.576 2.454 sum -6.677 -19.953 11.428 23.943 Atomic orbital electron populations 1.21736 0.95391 1.01538 1.02009 1.21349 0.95920 0.95482 1.02016 1.20229 0.85331 0.98610 1.04280 1.22456 0.97045 0.94790 0.88674 1.77159 0.86213 1.26365 1.22513 1.46100 1.07856 1.57152 1.05469 0.71186 1.23193 0.99145 0.96693 0.85725 1.20347 0.91987 1.22667 0.94839 1.17188 0.85704 0.75582 0.83387 1.90727 1.16181 1.50851 1.84199 1.45930 1.09430 1.75431 1.05896 1.20889 0.98068 0.95998 0.79670 0.89122 1.21905 0.97710 0.95415 1.01638 1.21480 0.95364 0.98453 0.99960 1.21594 0.98331 0.96252 0.99719 1.21551 0.97709 0.94295 1.01392 1.21689 0.94784 0.96087 1.00023 0.89710 1.20615 0.93008 0.89347 0.93276 1.42724 1.52726 1.12871 1.31737 1.19057 1.20720 0.87040 1.10423 0.89332 1.24673 0.99734 0.95957 0.98856 1.69701 1.37340 1.11878 1.39378 0.86553 0.78621 0.79496 0.83838 1.21088 1.21813 1.20344 0.92182 0.92848 0.92868 0.91506 0.92464 0.90701 0.87869 0.79804 0.76885 0.91486 0.91151 0.92226 0.92496 0.92304 0.91964 0.90963 0.92462 0.95677 0.95477 0.80662 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.15 0.37 -0.91 16 2 C -0.11 -1.10 5.92 -26.74 -0.16 -1.26 16 3 C -0.05 -0.51 5.25 -27.89 -0.15 -0.65 16 4 C 0.14 1.70 6.52 -82.02 -0.53 1.17 16 5 N -0.30 -3.54 12.63 33.90 0.43 -3.11 16 6 N -0.46 -3.96 7.29 30.85 0.22 -3.74 16 7 H 0.44 2.23 8.96 -182.73 -1.64 0.59 16 8 C 0.11 0.92 11.52 -16.56 -0.19 0.73 16 9 C -0.28 -3.35 6.13 -105.07 -0.64 -4.00 16 10 C 0.59 7.84 7.78 -12.52 -0.10 7.74 16 11 O -0.54 -8.52 14.58 5.27 0.08 -8.44 16 12 N -0.72 -8.28 3.61 -54.88 -0.20 -8.48 16 13 C 0.16 1.97 2.23 -67.93 -0.15 1.82 16 14 H 0.09 1.29 7.58 -51.93 -0.39 0.90 16 15 C -0.13 -1.39 5.60 -26.73 -0.15 -1.54 16 16 C -0.11 -1.11 5.77 -26.73 -0.15 -1.26 16 17 C -0.12 -1.25 5.92 -26.73 -0.16 -1.41 16 18 C -0.11 -1.40 4.90 -26.73 -0.13 -1.53 16 19 C -0.11 -1.47 2.02 -90.62 -0.18 -1.66 16 20 H 0.08 1.20 8.14 -51.92 -0.42 0.77 16 21 C 0.16 3.01 5.42 -4.04 -0.02 2.99 16 22 N -0.75 -17.22 5.13 -59.91 -0.31 -17.53 16 23 C -0.24 -6.76 10.47 -15.06 -0.16 -6.92 16 24 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 25 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 26 N -0.93 -29.22 13.97 55.49 0.78 -28.45 16 27 Si 0.88 21.70 27.74 -169.99 -4.71 16.99 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 1.30 6.56 -51.93 -0.34 0.96 16 38 H 0.19 0.97 7.46 -52.49 -0.39 0.58 16 39 H 0.40 3.96 5.59 -40.82 -0.23 3.73 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.57 7.60 -51.93 -0.39 0.17 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.07 1.07 7.18 -51.93 -0.37 0.70 16 47 H 0.06 0.65 6.50 -51.93 -0.34 0.31 16 48 H 0.03 0.46 7.61 -51.93 -0.40 0.06 16 49 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.36 7.98 4.71 -40.82 -0.19 7.78 16 51 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 398.51 15.07 6.01 6.01 Total: -1.00 -34.38 398.51 -10.09 -44.46 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -9.77 Total: 8.97 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.61 Total: -6.68 kcal Atomic # 7 Polarization: -62.23 SS G_CDS: 0.92 Total: -61.30 kcal Atomic # 8 Polarization: -8.52 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.38 -10.09 -44.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498484241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.827 kcal (2) G-P(sol) polarization free energy of solvation -34.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds