Wall clock time and date at job start Tue Mar 31 2020 19:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47295 * 2 1 4 4 C 1.50698 * 109.47415 * 180.02562 * 3 2 1 5 5 N 1.30451 * 125.99006 * 270.16521 * 4 3 2 6 6 N 1.39930 * 108.89720 * 180.26206 * 5 4 3 7 7 H 0.96998 * 125.75353 * 179.73512 * 6 5 4 8 8 C 1.34265 * 108.49325 * 359.74371 * 6 5 4 9 9 C 1.38039 * 107.41665 * 359.97438 * 8 6 5 10 10 C 1.47421 * 126.41795 * 179.97438 * 9 8 6 11 11 O 1.21604 * 120.00449 * 180.02562 * 10 9 8 12 12 N 1.34784 * 119.99990 * 0.02562 * 10 9 8 13 13 C 1.46498 * 120.00276 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46761 * 35.00601 * 13 12 10 15 15 C 1.52996 * 109.47119 * 275.00139 * 13 12 10 16 16 C 1.53001 * 109.47238 * 299.99906 * 15 13 12 17 17 C 1.53007 * 109.46923 * 300.00062 * 16 15 13 18 18 C 1.53003 * 109.46963 * 60.00343 * 17 16 15 19 19 C 1.53001 * 109.47020 * 299.99597 * 18 17 16 20 20 H 1.09008 * 109.46939 * 300.00621 * 19 18 17 21 21 C 1.52996 * 109.47238 * 180.02562 * 19 18 17 22 22 N 1.46498 * 109.47059 * 64.99625 * 21 19 18 23 23 C 1.36943 * 119.99752 * 179.72430 * 22 21 19 24 24 H 1.08002 * 119.99793 * 0.27665 * 23 22 21 25 25 C 1.38811 * 120.00012 * 180.27737 * 23 22 21 26 26 N 1.31611 * 120.00081 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99814 * 0.02562 * 25 23 22 28 28 H 1.48501 * 109.47483 * 90.00178 * 27 25 23 29 29 H 1.48498 * 109.47011 * 210.00042 * 27 25 23 30 30 H 1.48502 * 109.47495 * 329.99664 * 27 25 23 31 31 H 1.08998 * 109.47608 * 60.00266 * 1 2 3 32 32 H 1.09000 * 109.47076 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46962 * 299.99983 * 1 2 3 34 34 H 1.08999 * 109.47395 * 239.99702 * 2 1 3 35 35 H 1.08998 * 109.47608 * 119.99734 * 2 1 3 36 36 H 1.08999 * 109.47143 * 59.99548 * 3 2 1 37 37 H 1.09002 * 109.47013 * 300.00164 * 3 2 1 38 38 H 1.07993 * 126.28778 * 180.02562 * 8 6 5 39 39 H 0.97002 * 119.99865 * 0.02562 * 12 10 9 40 40 H 1.09001 * 109.46987 * 60.00124 * 15 13 12 41 41 H 1.09003 * 109.46613 * 179.97438 * 15 13 12 42 42 H 1.08994 * 109.47016 * 59.99904 * 16 15 13 43 43 H 1.09001 * 109.46786 * 180.02562 * 16 15 13 44 44 H 1.08997 * 109.46534 * 179.97438 * 17 16 15 45 45 H 1.08994 * 109.47145 * 299.99763 * 17 16 15 46 46 H 1.09001 * 109.46736 * 179.97438 * 18 17 16 47 47 H 1.08995 * 109.47226 * 59.99434 * 18 17 16 48 48 H 1.09004 * 109.47066 * 304.99893 * 21 19 18 49 49 H 1.08994 * 109.46974 * 185.00040 * 21 19 18 50 50 H 0.97001 * 120.00384 * 0.02562 * 22 21 19 51 51 H 0.97008 * 120.00329 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4425 -0.0006 5 7 4.3140 1.4393 1.0545 6 7 5.6513 1.4466 0.6427 7 1 6.4246 1.4498 1.2282 8 6 5.6836 1.4487 -0.6995 9 6 4.3768 1.4422 -1.1443 10 6 3.9304 1.4423 -2.5493 11 8 2.7427 1.4366 -2.8100 12 7 4.8389 1.4488 -3.5450 13 6 4.3954 1.4494 -4.9412 14 1 3.4802 2.0347 -5.0314 15 6 4.1281 0.0120 -5.3921 16 6 5.4127 -0.8094 -5.2655 17 6 6.5013 -0.1926 -6.1461 18 6 6.7686 1.2448 -5.6951 19 6 5.4841 2.0662 -5.8217 20 1 5.1540 2.0667 -6.8607 21 6 5.7514 3.5037 -5.3713 22 7 6.7058 4.1330 -6.2875 23 6 7.0942 5.4307 -6.0864 24 1 6.7003 5.9887 -5.2498 25 6 7.9942 6.0288 -6.9577 26 7 8.3678 7.2758 -6.7642 27 14 8.6748 5.0637 -8.4050 28 1 7.7913 5.2502 -9.5839 29 1 10.0398 5.5517 -8.7274 30 1 8.7347 3.6219 -8.0545 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6766 1.9563 -0.8900 38 1 6.5691 1.4537 -1.3176 39 1 5.7863 1.4529 -3.3370 40 1 3.3525 -0.4273 -4.7648 41 1 3.7977 0.0127 -6.4309 42 1 5.7427 -0.8099 -4.2267 43 1 5.2223 -1.8333 -5.5871 44 1 7.4166 -0.7776 -6.0555 45 1 6.1714 -0.1922 -7.1849 46 1 7.5445 1.6839 -6.3222 47 1 7.0985 1.2442 -4.6563 48 1 6.1657 3.4975 -4.3631 49 1 4.8176 4.0658 -5.3770 50 1 7.0593 3.6318 -7.0390 51 1 8.9970 7.6937 -7.3729 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498484241.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:20:21 Heat of formation + Delta-G solvation = -5.244321 kcal Electronic energy + Delta-G solvation = -29866.287841 eV Core-core repulsion = 25993.158452 eV Total energy + Delta-G solvation = -3873.129388 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.45266 -41.04123 -39.00314 -36.59065 -36.16655 -34.58063 -33.83646 -32.56234 -31.89688 -31.56552 -30.16790 -28.03272 -27.04239 -24.50673 -24.32347 -23.23839 -22.85842 -22.07081 -21.66818 -20.61897 -19.94744 -19.78622 -19.24575 -17.55243 -16.77778 -16.43960 -16.38887 -16.16984 -16.01539 -15.61263 -15.44836 -15.37256 -15.11337 -14.91083 -14.68486 -14.50249 -14.28949 -14.02875 -13.91957 -13.76476 -13.09422 -13.03210 -12.93393 -12.83106 -12.69248 -12.52023 -12.44376 -12.15808 -12.12626 -11.97103 -11.85624 -11.83246 -11.54898 -11.36706 -11.15927 -11.01739 -10.85092 -10.75278 -10.51239 -10.02778 -9.68013 -9.27131 -8.01614 -5.35077 0.56264 1.11106 1.38465 1.43260 1.50442 1.80619 2.36920 2.49805 2.52901 3.30017 3.44927 3.50195 3.73634 3.81954 3.88097 3.98386 4.12238 4.16913 4.22823 4.28376 4.36850 4.38581 4.42194 4.50758 4.55861 4.61439 4.62816 4.74835 4.78265 4.86150 4.90148 4.95608 5.02117 5.06882 5.13074 5.14920 5.22932 5.30834 5.33990 5.35143 5.39298 5.43692 5.46831 5.51191 5.56280 5.70793 5.76665 6.22141 6.26025 6.50057 6.74282 7.09641 7.41731 7.85257 8.05994 9.20212 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.003077 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.775332 B = 9097.582409 C = 9944.279997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.101 4.101 3 C -0.044 4.044 4 C 0.124 3.876 5 N -0.323 5.323 6 N -0.447 5.447 7 H 0.460 0.540 8 C 0.130 3.870 9 C -0.316 4.316 10 C 0.593 3.407 11 O -0.575 6.575 12 N -0.706 5.706 13 C 0.165 3.835 14 H 0.067 0.933 15 C -0.121 4.121 16 C -0.109 4.109 17 C -0.114 4.114 18 C -0.110 4.110 19 C -0.093 4.093 20 H 0.085 0.915 21 C 0.164 3.836 22 N -0.753 5.753 23 C -0.233 4.233 24 H 0.050 0.950 25 C -0.065 4.065 26 N -0.986 5.986 27 Si 0.956 3.044 28 H -0.281 1.281 29 H -0.297 1.297 30 H -0.243 1.243 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.224 0.776 39 H 0.405 0.595 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.030 0.970 49 H 0.006 0.994 50 H 0.368 0.632 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.396 -22.787 11.581 26.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.140 4.140 3 C -0.084 4.084 4 C -0.044 4.044 5 N -0.145 5.145 6 N -0.153 5.153 7 H 0.308 0.692 8 C -0.025 4.025 9 C -0.331 4.331 10 C 0.381 3.619 11 O -0.456 6.456 12 N -0.359 5.359 13 C 0.059 3.941 14 H 0.085 0.915 15 C -0.160 4.160 16 C -0.146 4.146 17 C -0.152 4.152 18 C -0.148 4.148 19 C -0.112 4.112 20 H 0.103 0.897 21 C 0.038 3.962 22 N -0.399 5.399 23 C -0.364 4.364 24 H 0.069 0.931 25 C -0.257 4.257 26 N -0.637 5.637 27 Si 0.783 3.217 28 H -0.208 1.208 29 H -0.224 1.224 30 H -0.167 1.167 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.240 0.760 39 H 0.243 0.757 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.082 0.918 46 H 0.072 0.928 47 H 0.089 0.911 48 H 0.048 0.952 49 H 0.024 0.976 50 H 0.202 0.798 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.190 -22.604 12.801 26.953 hybrid contribution 1.385 0.590 -1.384 2.045 sum -5.805 -22.014 11.417 25.469 Atomic orbital electron populations 1.21718 0.94282 1.02288 1.02086 1.21267 0.96839 0.94554 1.01304 1.20188 0.85447 0.99172 1.03544 1.22616 0.97500 0.95096 0.89164 1.77096 0.87529 1.27199 1.22708 1.46141 1.07522 1.55762 1.05887 0.69185 1.23688 0.99179 0.93761 0.85856 1.20355 0.93434 1.25351 0.93968 1.17414 0.85365 0.74951 0.84151 1.90709 1.17620 1.52492 1.84748 1.45807 1.09750 1.74997 1.05306 1.20740 0.96500 0.96887 0.79944 0.91522 1.21833 0.98410 0.94003 1.01731 1.21445 0.94133 0.98788 1.00260 1.21541 0.99211 0.94626 0.99782 1.21541 0.95854 0.95359 1.02038 1.21536 0.96275 0.93272 1.00113 0.89657 1.20736 0.90927 0.91735 0.92841 1.42668 1.53284 1.11224 1.32709 1.19003 1.19776 0.88816 1.08842 0.93147 1.25541 1.00652 0.97062 1.02413 1.69898 1.38627 1.14179 1.41012 0.85392 0.77132 0.79711 0.79445 1.20767 1.22386 1.16674 0.93060 0.91746 0.91822 0.93119 0.92054 0.90042 0.89828 0.75984 0.75734 0.92442 0.90450 0.91715 0.91032 0.90713 0.91804 0.92758 0.91124 0.95214 0.97554 0.79836 0.93377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.91 71.98 0.71 -1.77 16 2 C -0.10 -2.06 5.92 30.59 0.18 -1.88 16 3 C -0.04 -1.02 5.25 29.85 0.16 -0.87 16 4 C 0.12 3.03 6.52 43.52 0.28 3.32 16 5 N -0.32 -7.30 12.63 -46.67 -0.59 -7.89 16 6 N -0.45 -6.70 7.29 -56.32 -0.41 -7.11 16 7 H 0.46 3.40 8.96 -213.43 -1.91 1.49 16 8 C 0.13 1.94 11.52 84.27 0.97 2.92 16 9 C -0.32 -7.23 6.13 -20.15 -0.12 -7.36 16 10 C 0.59 15.54 7.78 86.66 0.67 16.22 16 11 O -0.58 -18.72 14.58 -4.04 -0.06 -18.78 16 12 N -0.71 -15.49 3.61 -445.80 -1.61 -17.10 16 13 C 0.16 3.93 2.23 44.99 0.10 4.03 16 14 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 15 C -0.12 -2.39 5.60 30.59 0.17 -2.22 16 16 C -0.11 -1.72 5.77 30.60 0.18 -1.54 16 17 C -0.11 -1.91 5.92 30.60 0.18 -1.73 16 18 C -0.11 -2.41 4.90 30.60 0.15 -2.26 16 19 C -0.09 -2.41 2.02 -10.79 -0.02 -2.43 16 20 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 21 C 0.16 5.92 5.42 86.38 0.47 6.39 16 22 N -0.75 -33.71 5.13 -343.46 -1.76 -35.47 16 23 C -0.23 -13.19 10.47 84.03 0.88 -12.31 16 24 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 25 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 26 N -0.99 -63.13 13.97 21.65 0.30 -62.82 16 27 Si 0.96 44.25 27.74 68.60 1.90 46.15 16 28 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 29 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 30 H -0.24 -9.74 6.52 99.48 0.65 -9.09 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.08 2.25 6.56 -2.39 -0.02 2.24 16 38 H 0.22 1.43 7.46 -2.91 -0.02 1.40 16 39 H 0.41 7.10 5.59 -92.71 -0.52 6.58 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 42 H 0.06 0.98 7.60 -2.39 -0.02 0.96 16 43 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.05 1.42 7.18 -2.39 -0.02 1.40 16 47 H 0.07 1.34 6.50 -2.39 -0.02 1.33 16 48 H 0.03 1.06 7.61 -2.38 -0.02 1.04 16 49 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 50 H 0.37 15.43 4.71 -92.71 -0.44 15.00 16 51 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 Total: -1.00 -77.19 398.51 1.23 -75.97 By element: Atomic # 1 Polarization: 33.88 SS G_CDS: -1.98 Total: 31.91 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 5.43 Total: -4.84 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -4.07 Total: -130.40 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.06 Total: -18.78 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.90 Total: 46.15 kcal Total: -77.19 1.23 -75.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498484241.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.721 kcal (2) G-P(sol) polarization free energy of solvation -77.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds