Wall clock time and date at job start Tue Mar 31 2020 18:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47325 * 2 1 4 4 C 1.34674 * 126.58823 * 84.97541 * 3 2 1 5 5 N 1.34129 * 108.02093 * 180.02562 * 4 3 2 6 6 C 1.30499 * 109.25510 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.64881 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47230 * 305.02705 * 7 6 5 9 9 O 1.21280 * 119.99891 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99954 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99960 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.46360 * 60.02587 * 12 11 10 14 14 C 1.53043 * 109.46316 * 300.06258 * 12 11 10 15 15 C 1.53188 * 109.31588 * 178.61644 * 14 12 11 16 16 N 1.46927 * 108.77309 * 54.63545 * 15 14 12 17 17 C 1.36944 * 120.62601 * 126.41582 * 16 15 14 18 18 H 1.07996 * 119.99766 * 207.66094 * 17 16 15 19 19 C 1.38809 * 120.00216 * 27.66145 * 17 16 15 20 20 N 1.31624 * 119.99880 * 17.37275 * 19 17 16 21 21 Si 1.86799 * 119.99884 * 197.36596 * 19 17 16 22 22 H 1.48494 * 109.46972 * 60.00276 * 21 19 17 23 23 H 1.48504 * 109.46709 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47074 * 300.00092 * 21 19 17 25 25 C 1.46921 * 118.74229 * 306.39136 * 16 15 14 26 26 C 1.53043 * 109.45804 * 179.97438 * 12 11 10 27 27 N 1.35049 * 108.69979 * 0.26566 * 6 5 4 28 28 H 0.97000 * 126.39360 * 179.73891 * 27 6 5 29 29 H 1.08997 * 109.47009 * 299.99217 * 1 2 3 30 30 H 1.09004 * 109.47454 * 59.99441 * 1 2 3 31 31 H 1.08999 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.47072 * 240.00712 * 2 1 3 33 33 H 1.08991 * 109.47695 * 120.00683 * 2 1 3 34 34 H 1.08003 * 125.98796 * 0.02562 * 4 3 2 35 35 H 1.08999 * 109.47251 * 185.02554 * 7 6 5 36 36 H 1.09004 * 109.46871 * 65.02723 * 7 6 5 37 37 H 0.97003 * 119.99899 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.46854 * 59.99668 * 11 10 8 39 39 H 1.08996 * 109.46689 * 299.99346 * 11 10 8 40 40 H 1.09004 * 109.47388 * 59.99795 * 13 12 11 41 41 H 1.08996 * 109.47271 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.47515 * 300.00000 * 13 12 11 43 43 H 1.08997 * 109.49673 * 298.57170 * 14 12 11 44 44 H 1.09009 * 109.49340 * 58.66440 * 14 12 11 45 45 H 1.09004 * 109.58592 * 294.85463 * 15 14 12 46 46 H 1.08997 * 109.58962 * 174.42726 * 15 14 12 47 47 H 0.97000 * 119.99838 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58768 * 293.82479 * 25 16 15 49 49 H 1.08994 * 109.70435 * 173.46211 * 25 16 15 50 50 H 1.09000 * 109.49776 * 301.33647 * 26 12 11 51 51 H 1.09000 * 109.49611 * 61.43363 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2107 2.2092 1.0772 5 7 2.6693 3.3957 0.6517 6 6 2.7824 3.3723 -0.6482 7 6 3.2645 4.5118 -1.5085 8 6 2.4322 5.7373 -1.2316 9 8 1.5361 5.6901 -0.4157 10 7 2.6836 6.8856 -1.8908 11 6 1.8749 8.0770 -1.6212 12 6 2.3643 9.2339 -2.4948 13 6 2.2310 8.8506 -3.9699 14 6 3.8317 9.5287 -2.1754 15 6 4.3281 10.6641 -3.0760 16 7 3.4326 11.8183 -2.9186 17 6 3.9338 13.0513 -2.5963 18 1 3.3207 13.7600 -2.0596 19 6 5.2300 13.3902 -2.9595 20 7 5.8561 12.6972 -3.8870 21 14 6.0856 14.8299 -2.1321 22 1 6.1764 14.5787 -0.6714 23 1 7.4515 14.9835 -2.6944 24 1 5.3089 16.0724 -2.3734 25 6 1.9894 11.6247 -3.1141 26 6 1.5189 10.4782 -2.2135 27 7 2.3899 2.1599 -1.0952 28 1 2.3675 1.8669 -2.0196 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 2.0181 1.9343 2.1037 35 1 3.1705 4.2386 -2.5595 36 1 4.3092 4.7228 -1.2799 37 1 3.4005 6.9234 -2.5431 38 1 1.9697 8.3504 -0.5703 39 1 0.8301 7.8661 -1.8490 40 1 1.1861 8.6400 -4.1977 41 1 2.5792 9.6748 -4.5924 42 1 2.8324 7.9639 -4.1707 43 1 3.9241 9.8259 -1.1309 44 1 4.4295 8.6348 -2.3540 45 1 4.3214 10.3356 -4.1154 46 1 5.3405 10.9448 -2.7858 47 1 6.7617 12.9343 -4.1411 48 1 1.7921 11.3745 -4.1565 49 1 1.4570 12.5385 -2.8505 50 1 0.4709 10.2602 -2.4192 51 1 1.6327 10.7667 -1.1685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500428391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:32 Heat of formation + Delta-G solvation = 25.610275 kcal Electronic energy + Delta-G solvation = -28891.451591 eV Core-core repulsion = 25019.660158 eV Total energy + Delta-G solvation = -3871.791433 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.31800 -39.79993 -38.38139 -35.04142 -34.48123 -33.16656 -32.63341 -31.57731 -30.72536 -29.91647 -27.67584 -27.06514 -26.24525 -24.01362 -23.59245 -22.35928 -21.45467 -21.09406 -20.63027 -20.02678 -18.03537 -17.64361 -17.21108 -16.36149 -15.76103 -15.73498 -15.13273 -14.83572 -14.74632 -14.45593 -14.17442 -13.95526 -13.79920 -13.64794 -13.47060 -13.44422 -13.19596 -12.82568 -12.76287 -12.56934 -12.40060 -11.99562 -11.80353 -11.58948 -11.47050 -11.28965 -11.16999 -10.75291 -10.69535 -10.52388 -10.20122 -10.18202 -10.12629 -9.99927 -9.83935 -9.77895 -9.49422 -9.40218 -8.89140 -8.43278 -8.40504 -6.64418 -5.78247 -3.19286 1.76874 2.67124 2.73808 2.98888 3.39370 3.44884 3.44923 3.47023 4.10671 4.44872 4.50975 4.56384 4.69715 4.84969 4.89134 5.08628 5.10847 5.17699 5.19671 5.23306 5.25160 5.37966 5.42079 5.44206 5.53390 5.58379 5.78589 5.79416 5.87440 5.99102 6.06044 6.09373 6.12950 6.16363 6.32606 6.47143 6.48888 6.59049 6.59421 6.63542 6.72043 6.79863 6.88798 7.01088 7.12645 7.37696 7.59157 7.67263 7.80778 7.99125 8.31587 8.46357 9.22969 9.86661 10.43067 11.30176 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.001995 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.302485 B =14031.047342 C =14372.118638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C -0.026 4.026 4 C -0.021 4.021 5 N -0.456 5.456 6 C 0.221 3.779 7 C -0.056 4.056 8 C 0.514 3.486 9 O -0.520 6.520 10 N -0.723 5.723 11 C 0.132 3.868 12 C -0.063 4.063 13 C -0.141 4.141 14 C -0.130 4.130 15 C 0.171 3.829 16 N -0.591 5.591 17 C -0.251 4.251 18 H 0.064 0.936 19 C 0.002 3.998 20 N -0.904 5.904 21 Si 0.901 3.099 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.146 3.854 26 C -0.121 4.121 27 N -0.563 5.563 28 H 0.415 0.585 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.400 0.600 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.045 0.955 45 H 0.021 0.979 46 H 0.085 0.915 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.052 0.948 50 H 0.051 0.949 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.914 -24.815 1.488 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.084 4.084 3 C -0.142 4.142 4 C -0.170 4.170 5 N -0.175 5.175 6 C -0.043 4.043 7 C -0.098 4.098 8 C 0.297 3.703 9 O -0.395 6.395 10 N -0.377 5.377 11 C 0.009 3.991 12 C -0.064 4.064 13 C -0.198 4.198 14 C -0.169 4.169 15 C 0.045 3.955 16 N -0.314 5.314 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.209 1.209 25 C 0.020 3.980 26 C -0.160 4.160 27 N -0.167 5.167 28 H 0.252 0.748 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.105 0.895 34 H 0.184 0.816 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.236 0.764 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.075 0.925 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.217 -24.105 2.577 25.294 hybrid contribution 0.657 -0.081 -0.895 1.113 sum -6.560 -24.186 1.682 25.116 Atomic orbital electron populations 1.21783 0.94421 1.01816 1.02618 1.19967 0.96058 0.89087 1.03258 1.21221 1.09095 0.96529 0.87331 1.22119 1.06097 0.90101 0.98642 1.70257 1.17319 1.21775 1.08110 1.22236 1.04374 0.86588 0.91128 1.19949 1.01610 0.89590 0.98675 1.20043 0.84739 0.84045 0.81434 1.90765 1.31462 1.84295 1.32931 1.46036 1.37331 1.10726 1.43587 1.21511 0.94102 0.83662 0.99844 1.20689 0.97413 0.93609 0.94672 1.21935 1.00466 1.01353 0.96094 1.22253 0.93370 0.99579 1.01701 1.20799 0.95759 0.84391 0.94535 1.44018 1.00194 1.05707 1.81441 1.19151 0.97664 0.92202 1.29012 0.91812 1.25006 0.99262 0.98309 0.97094 1.70020 1.13093 1.42177 1.29560 0.86386 0.78735 0.82398 0.79363 1.21065 1.21694 1.20936 1.20903 0.86688 0.95119 0.95315 1.22003 0.97151 0.95538 1.01337 1.43075 1.51556 1.12574 1.09523 0.74779 0.91954 0.92889 0.92074 0.91393 0.89478 0.81571 0.87660 0.86201 0.76402 0.91689 0.92117 0.93507 0.90757 0.93722 0.92496 0.93636 0.96141 0.89644 0.93674 0.96218 0.92951 0.92990 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.16 0.37 -0.48 16 2 C -0.04 -0.26 6.49 -27.88 -0.18 -0.44 16 3 C -0.03 -0.24 6.49 -81.60 -0.53 -0.77 16 4 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 5 N -0.46 -6.74 10.58 -10.81 -0.11 -6.85 16 6 C 0.22 2.59 6.96 -155.41 -1.08 1.51 16 7 C -0.06 -0.52 6.33 -29.03 -0.18 -0.71 16 8 C 0.51 6.83 7.82 -10.99 -0.09 6.74 16 9 O -0.52 -9.36 15.55 5.56 0.09 -9.27 16 10 N -0.72 -8.83 4.95 -60.30 -0.30 -9.13 16 11 C 0.13 1.89 4.56 -4.04 -0.02 1.87 16 12 C -0.06 -0.97 0.53 -154.47 -0.08 -1.05 16 13 C -0.14 -2.00 7.54 37.15 0.28 -1.72 16 14 C -0.13 -2.29 4.75 -26.61 -0.13 -2.42 16 15 C 0.17 3.84 4.84 -3.71 -0.02 3.82 16 16 N -0.59 -14.28 3.00 -172.33 -0.52 -14.79 16 17 C -0.25 -6.78 9.59 -15.06 -0.14 -6.92 16 18 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 19 C 0.00 0.04 4.91 -17.43 -0.09 -0.04 16 20 N -0.90 -25.70 11.19 55.49 0.62 -25.08 16 21 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.15 2.95 6.04 -3.71 -0.02 2.93 16 26 C -0.12 -2.02 4.91 -26.61 -0.13 -2.15 16 27 N -0.56 -4.93 6.15 -6.54 -0.04 -4.97 16 28 H 0.41 2.17 8.96 -40.82 -0.37 1.80 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.40 4.07 6.16 -40.82 -0.25 3.82 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 1.24 4.98 -51.93 -0.26 0.99 16 42 H 0.04 0.54 6.86 -51.93 -0.36 0.18 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.05 0.69 6.82 -51.92 -0.35 0.34 16 45 H 0.02 0.48 6.69 -51.93 -0.35 0.13 16 46 H 0.09 2.21 6.04 -51.93 -0.31 1.89 16 47 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 48 H 0.02 0.40 6.69 -51.93 -0.35 0.05 16 49 H 0.05 1.06 7.94 -51.93 -0.41 0.64 16 50 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -34.93 397.00 -10.03 -44.96 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.47 Total: 2.87 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -2.25 Total: -0.29 kcal Atomic # 7 Polarization: -60.47 SS G_CDS: -0.35 Total: -60.82 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: 0.09 Total: -9.27 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.93 -10.03 -44.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500428391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.570 kcal (2) G-P(sol) polarization free energy of solvation -34.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds