Wall clock time and date at job start Tue Mar 31 2020 18:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50701 * 109.47325 * 2 1 4 4 C 1.34674 * 126.58823 * 84.97541 * 3 2 1 5 5 N 1.34129 * 108.02093 * 180.02562 * 4 3 2 6 6 C 1.30499 * 109.25510 * 359.97438 * 5 4 3 7 7 C 1.50698 * 125.64881 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47230 * 305.02705 * 7 6 5 9 9 O 1.21280 * 119.99891 * 0.02562 * 8 7 6 10 10 N 1.34772 * 119.99954 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99960 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.46884 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.46360 * 60.02587 * 12 11 10 14 14 C 1.53043 * 109.46316 * 300.06258 * 12 11 10 15 15 C 1.53188 * 109.31588 * 178.61644 * 14 12 11 16 16 N 1.46927 * 108.77309 * 54.63545 * 15 14 12 17 17 C 1.36944 * 120.62601 * 126.41582 * 16 15 14 18 18 H 1.07996 * 119.99766 * 207.66094 * 17 16 15 19 19 C 1.38809 * 120.00216 * 27.66145 * 17 16 15 20 20 N 1.31624 * 119.99880 * 17.37275 * 19 17 16 21 21 Si 1.86799 * 119.99884 * 197.36596 * 19 17 16 22 22 H 1.48494 * 109.46972 * 60.00276 * 21 19 17 23 23 H 1.48504 * 109.46709 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47074 * 300.00092 * 21 19 17 25 25 C 1.46921 * 118.74229 * 306.39136 * 16 15 14 26 26 C 1.53043 * 109.45804 * 179.97438 * 12 11 10 27 27 N 1.35049 * 108.69979 * 0.26566 * 6 5 4 28 28 H 0.97000 * 126.39360 * 179.73891 * 27 6 5 29 29 H 1.08997 * 109.47009 * 299.99217 * 1 2 3 30 30 H 1.09004 * 109.47454 * 59.99441 * 1 2 3 31 31 H 1.08999 * 109.46818 * 179.97438 * 1 2 3 32 32 H 1.09011 * 109.47072 * 240.00712 * 2 1 3 33 33 H 1.08991 * 109.47695 * 120.00683 * 2 1 3 34 34 H 1.08003 * 125.98796 * 0.02562 * 4 3 2 35 35 H 1.08999 * 109.47251 * 185.02554 * 7 6 5 36 36 H 1.09004 * 109.46871 * 65.02723 * 7 6 5 37 37 H 0.97003 * 119.99899 * 359.97438 * 10 8 7 38 38 H 1.08997 * 109.46854 * 59.99668 * 11 10 8 39 39 H 1.08996 * 109.46689 * 299.99346 * 11 10 8 40 40 H 1.09004 * 109.47388 * 59.99795 * 13 12 11 41 41 H 1.08996 * 109.47271 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.47515 * 300.00000 * 13 12 11 43 43 H 1.08997 * 109.49673 * 298.57170 * 14 12 11 44 44 H 1.09009 * 109.49340 * 58.66440 * 14 12 11 45 45 H 1.09004 * 109.58592 * 294.85463 * 15 14 12 46 46 H 1.08997 * 109.58962 * 174.42726 * 15 14 12 47 47 H 0.97000 * 119.99838 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.58768 * 293.82479 * 25 16 15 49 49 H 1.08994 * 109.70435 * 173.46211 * 25 16 15 50 50 H 1.09000 * 109.49776 * 301.33647 * 26 12 11 51 51 H 1.09000 * 109.49611 * 61.43363 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2107 2.2092 1.0772 5 7 2.6693 3.3957 0.6517 6 6 2.7824 3.3723 -0.6482 7 6 3.2645 4.5118 -1.5085 8 6 2.4322 5.7373 -1.2316 9 8 1.5361 5.6901 -0.4157 10 7 2.6836 6.8856 -1.8908 11 6 1.8749 8.0770 -1.6212 12 6 2.3643 9.2339 -2.4948 13 6 2.2310 8.8506 -3.9699 14 6 3.8317 9.5287 -2.1754 15 6 4.3281 10.6641 -3.0760 16 7 3.4326 11.8183 -2.9186 17 6 3.9338 13.0513 -2.5963 18 1 3.3207 13.7600 -2.0596 19 6 5.2300 13.3902 -2.9595 20 7 5.8561 12.6972 -3.8870 21 14 6.0856 14.8299 -2.1321 22 1 6.1764 14.5787 -0.6714 23 1 7.4515 14.9835 -2.6944 24 1 5.3089 16.0724 -2.3734 25 6 1.9894 11.6247 -3.1141 26 6 1.5189 10.4782 -2.2135 27 7 2.3899 2.1599 -1.0952 28 1 2.3675 1.8669 -2.0196 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8898 34 1 2.0181 1.9343 2.1037 35 1 3.1705 4.2386 -2.5595 36 1 4.3092 4.7228 -1.2799 37 1 3.4005 6.9234 -2.5431 38 1 1.9697 8.3504 -0.5703 39 1 0.8301 7.8661 -1.8490 40 1 1.1861 8.6400 -4.1977 41 1 2.5792 9.6748 -4.5924 42 1 2.8324 7.9639 -4.1707 43 1 3.9241 9.8259 -1.1309 44 1 4.4295 8.6348 -2.3540 45 1 4.3214 10.3356 -4.1154 46 1 5.3405 10.9448 -2.7858 47 1 6.7617 12.9343 -4.1411 48 1 1.7921 11.3745 -4.1565 49 1 1.4570 12.5385 -2.8505 50 1 0.4709 10.2602 -2.4192 51 1 1.6327 10.7667 -1.1685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500428391.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:24 Heat of formation + Delta-G solvation = 2.447623 kcal Electronic energy + Delta-G solvation = -28892.455999 eV Core-core repulsion = 25019.660158 eV Total energy + Delta-G solvation = -3872.795841 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -43.07970 -40.98085 -39.73050 -36.56304 -35.07616 -34.63822 -33.47035 -32.80208 -31.98779 -31.55280 -28.82394 -28.30939 -27.39783 -25.64838 -24.26034 -23.89514 -22.69712 -22.02543 -21.77690 -20.95145 -19.61388 -18.47422 -18.33779 -17.91942 -16.84730 -16.75998 -16.60701 -16.10441 -15.64963 -15.50291 -15.34659 -15.17157 -15.01756 -14.96443 -14.56801 -14.45674 -14.43565 -13.97667 -13.95631 -13.61306 -13.30646 -13.14099 -12.96152 -12.82021 -12.64369 -12.53526 -12.46199 -12.35775 -12.20112 -12.02896 -11.88926 -11.77451 -11.43358 -11.15503 -11.02559 -10.93905 -10.88347 -10.76791 -10.46194 -9.99778 -9.16757 -8.60747 -7.84805 -5.27721 1.02740 1.46633 1.48959 1.55286 1.71719 1.94091 2.20106 2.52494 2.54274 3.28858 3.37450 3.74877 3.83466 3.89925 3.91288 3.97211 4.04550 4.08309 4.17384 4.40386 4.44694 4.45706 4.54396 4.59320 4.65026 4.71883 4.74484 4.76956 4.83110 4.87587 4.89491 4.95510 4.99219 5.05467 5.09810 5.17143 5.31103 5.34605 5.34717 5.41577 5.43358 5.49546 5.54612 5.59546 5.69682 5.82451 5.88970 6.42846 6.50952 6.65035 7.19628 7.21109 7.34111 7.92496 8.42300 9.20590 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026935 B = 0.001995 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.302485 B =14031.047342 C =14372.118638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C -0.009 4.009 4 C -0.062 4.062 5 N -0.511 5.511 6 C 0.205 3.795 7 C -0.050 4.050 8 C 0.513 3.487 9 O -0.572 6.572 10 N -0.713 5.713 11 C 0.144 3.856 12 C -0.052 4.052 13 C -0.135 4.135 14 C -0.117 4.117 15 C 0.178 3.822 16 N -0.610 5.610 17 C -0.262 4.262 18 H 0.060 0.940 19 C -0.048 4.048 20 N -0.930 5.930 21 Si 0.961 3.039 22 H -0.283 1.283 23 H -0.293 1.293 24 H -0.277 1.277 25 C 0.143 3.857 26 C -0.114 4.114 27 N -0.550 5.550 28 H 0.433 0.567 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.139 0.861 37 H 0.413 0.587 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.011 0.989 46 H 0.047 0.953 47 H 0.249 0.751 48 H 0.024 0.976 49 H 0.045 0.955 50 H 0.080 0.920 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.395 -27.278 0.444 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.209 4.209 5 N -0.230 5.230 6 C -0.060 4.060 7 C -0.091 4.091 8 C 0.299 3.701 9 O -0.450 6.450 10 N -0.367 5.367 11 C 0.020 3.980 12 C -0.053 4.053 13 C -0.193 4.193 14 C -0.156 4.156 15 C 0.053 3.947 16 N -0.333 5.333 17 C -0.393 4.393 18 H 0.078 0.922 19 C -0.244 4.244 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.209 1.209 23 H -0.219 1.219 24 H -0.203 1.203 25 C 0.018 3.982 26 C -0.153 4.153 27 N -0.156 5.156 28 H 0.274 0.726 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.188 0.812 35 H 0.169 0.831 36 H 0.156 0.844 37 H 0.251 0.749 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.029 0.971 46 H 0.065 0.935 47 H 0.058 0.942 48 H 0.042 0.958 49 H 0.064 0.936 50 H 0.099 0.901 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.700 -26.583 1.496 27.716 hybrid contribution 0.744 0.668 -0.572 1.152 sum -6.956 -25.915 0.924 26.849 Atomic orbital electron populations 1.21762 0.94342 1.02781 1.01552 1.20104 0.95916 0.87007 1.04985 1.21682 1.06729 0.97494 0.86626 1.22406 1.08126 0.90431 0.99980 1.70159 1.19114 1.23519 1.10254 1.22570 1.04657 0.87974 0.90783 1.20067 1.01309 0.86822 1.00863 1.20717 0.84207 0.85003 0.80211 1.90752 1.33950 1.85171 1.35172 1.45911 1.37240 1.09915 1.43626 1.21207 0.94642 0.83875 0.98262 1.20545 0.95223 0.93479 0.96039 1.21864 1.02060 1.01310 0.94019 1.22062 0.95566 0.98757 0.99244 1.20619 0.93922 0.85358 0.94832 1.44281 1.01989 1.05367 1.81696 1.19437 0.98016 0.93296 1.28527 0.92225 1.25678 0.99935 1.00899 0.97866 1.70154 1.12993 1.43665 1.30818 0.85441 0.77472 0.79888 0.78247 1.20906 1.21875 1.20308 1.21028 0.84523 0.96349 0.96298 1.21900 0.98975 0.94830 0.99631 1.43020 1.50458 1.11683 1.10419 0.72613 0.93367 0.93624 0.90093 0.89154 0.88250 0.81208 0.83077 0.84374 0.74868 0.93687 0.91654 0.91727 0.93493 0.91213 0.94352 0.90766 0.97092 0.93483 0.94158 0.95797 0.93593 0.90142 0.93349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.89 71.98 0.71 -0.68 16 2 C -0.04 -0.37 6.49 29.85 0.19 -0.18 16 3 C -0.01 -0.14 6.49 40.95 0.27 0.12 16 4 C -0.06 -1.48 11.79 83.52 0.98 -0.50 16 5 N -0.51 -15.15 10.58 -188.12 -1.99 -17.14 16 6 C 0.20 4.49 6.96 138.13 0.96 5.45 16 7 C -0.05 -0.77 6.33 29.10 0.18 -0.59 16 8 C 0.51 12.63 7.82 87.66 0.69 13.32 16 9 O -0.57 -20.36 15.55 -3.03 -0.05 -20.41 16 10 N -0.71 -15.53 4.95 -463.07 -2.29 -17.82 16 11 C 0.14 3.85 4.56 86.38 0.39 4.25 16 12 C -0.05 -1.51 0.53 -52.15 -0.03 -1.54 16 13 C -0.14 -3.46 7.54 71.98 0.54 -2.92 16 14 C -0.12 -4.05 4.75 30.67 0.15 -3.90 16 15 C 0.18 8.12 4.84 86.36 0.42 8.54 16 16 N -0.61 -29.95 3.00 -699.12 -2.09 -32.05 16 17 C -0.26 -14.47 9.59 84.03 0.81 -13.67 16 18 H 0.06 3.26 7.89 -2.91 -0.02 3.23 16 19 C -0.05 -2.69 4.91 84.86 0.42 -2.27 16 20 N -0.93 -54.13 11.19 21.65 0.24 -53.89 16 21 Si 0.96 45.16 29.59 68.60 2.03 47.19 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 23 H -0.29 -13.72 7.11 99.48 0.71 -13.02 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 C 0.14 5.76 6.04 86.36 0.52 6.29 16 26 C -0.11 -3.68 4.91 30.67 0.15 -3.53 16 27 N -0.55 -8.36 6.15 -174.60 -1.07 -9.43 16 28 H 0.43 3.06 8.96 -92.71 -0.83 2.23 16 29 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.04 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 33 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.17 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.41 6.86 6.16 -92.71 -0.57 6.29 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.49 4.98 -2.39 -0.01 1.48 16 42 H 0.07 1.42 6.86 -2.39 -0.02 1.41 16 43 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.07 2.11 6.82 -2.38 -0.02 2.10 16 45 H 0.01 0.52 6.69 -2.39 -0.02 0.50 16 46 H 0.05 2.50 6.04 -2.39 -0.01 2.49 16 47 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 48 H 0.02 0.95 6.69 -2.39 -0.02 0.94 16 49 H 0.05 1.86 7.94 -2.39 -0.02 1.84 16 50 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 51 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -80.09 397.00 1.67 -78.42 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -0.46 Total: 16.94 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: 7.36 Total: 8.18 kcal Atomic # 7 Polarization: -123.11 SS G_CDS: -7.21 Total: -130.32 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.05 Total: -20.41 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -80.09 1.67 -78.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500428391.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.868 kcal (2) G-P(sol) polarization free energy of solvation -80.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.14 seconds