Wall clock time and date at job start Tue Mar 31 2020 20:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46992 * 2 1 4 4 C 1.52998 * 109.47144 * 239.99959 * 2 1 3 5 5 C 1.50698 * 109.47414 * 119.99800 * 2 1 3 6 6 N 1.30447 * 125.99327 * 241.98283 * 5 2 1 7 7 N 1.39935 * 108.90010 * 180.22413 * 6 5 2 8 8 H 0.96993 * 125.75446 * 179.72541 * 7 6 5 9 9 C 1.34261 * 108.49027 * 359.75465 * 7 6 5 10 10 C 1.38041 * 107.41937 * 359.97438 * 9 7 6 11 11 C 1.47428 * 126.42113 * 179.97438 * 10 9 7 12 12 O 1.21600 * 120.00717 * 175.24004 * 11 10 9 13 13 N 1.34783 * 119.99456 * 354.96163 * 11 10 9 14 14 C 1.47026 * 125.64857 * 359.97284 * 13 11 10 15 15 C 1.54327 * 107.26419 * 178.84609 * 14 13 11 16 16 C 1.55155 * 103.02270 * 338.13853 * 15 14 13 17 17 H 1.09000 * 111.04161 * 277.21816 * 16 15 14 18 18 C 1.53003 * 111.00287 * 153.38094 * 16 15 14 19 19 C 1.52998 * 109.47105 * 181.35177 * 18 16 15 20 20 N 1.46503 * 109.47511 * 179.97438 * 19 18 16 21 21 C 1.36933 * 120.00162 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99881 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00191 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99824 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00311 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47021 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46942 * 120.00341 * 25 23 21 28 28 H 1.48505 * 109.47187 * 240.00211 * 25 23 21 29 29 C 1.47423 * 125.65028 * 180.27537 * 13 11 10 30 30 H 1.08997 * 109.47401 * 308.70185 * 1 2 3 31 31 H 1.08999 * 109.47049 * 68.70389 * 1 2 3 32 32 H 1.09000 * 109.47253 * 188.70160 * 1 2 3 33 33 H 1.09000 * 109.46879 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47119 * 299.99956 * 3 2 1 35 35 H 1.08994 * 109.46985 * 60.00016 * 3 2 1 36 36 H 1.08997 * 109.47578 * 291.64167 * 4 2 1 37 37 H 1.09002 * 109.47203 * 51.64742 * 4 2 1 38 38 H 1.09003 * 109.47241 * 171.64177 * 4 2 1 39 39 H 1.07997 * 126.28949 * 180.02562 * 9 7 6 40 40 H 1.08996 * 109.88252 * 298.39062 * 14 13 11 41 41 H 1.08998 * 109.88117 * 59.55449 * 14 13 11 42 42 H 1.09002 * 110.85181 * 219.67059 * 15 14 13 43 43 H 1.09007 * 110.67009 * 96.52530 * 15 14 13 44 44 H 1.08998 * 109.47420 * 301.34791 * 18 16 15 45 45 H 1.08999 * 109.47075 * 61.35001 * 18 16 15 46 46 H 1.09005 * 109.47295 * 300.00143 * 19 18 16 47 47 H 1.09004 * 109.47107 * 59.99555 * 19 18 16 48 48 H 0.97001 * 119.99557 * 0.02562 * 20 19 18 49 49 H 0.96992 * 120.00203 * 179.97438 * 24 23 21 50 50 H 1.09006 * 110.36544 * 322.93457 * 29 13 11 51 51 H 1.09000 * 110.36475 * 85.25234 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2304 6 7 2.7554 -0.1821 2.1791 7 7 3.0234 -1.1606 3.1429 8 1 3.5446 -1.0326 3.9508 9 6 2.4381 -2.3067 2.7604 10 6 1.7993 -2.0642 1.5609 11 6 1.0249 -3.0374 0.7692 12 8 0.4362 -2.6761 -0.2315 13 7 0.9740 -4.3288 1.1517 14 6 1.6407 -4.9001 2.3310 15 6 1.2767 -6.3990 2.3816 16 6 -0.0265 -6.4708 1.5427 17 1 -0.8947 -6.2022 2.1445 18 6 -0.2022 -7.8574 0.9202 19 6 -1.4775 -7.8792 0.0751 20 7 -1.6455 -9.2067 -0.5215 21 6 -2.7246 -9.4651 -1.3238 22 1 -3.4517 -8.6902 -1.5172 23 6 -2.8841 -10.7230 -1.8887 24 7 -1.9983 -11.6675 -1.6526 25 14 -4.3558 -11.0755 -2.9838 26 1 -5.1966 -9.8561 -3.0906 27 1 -3.8838 -11.4707 -4.3352 28 1 -5.1566 -12.1797 -2.3966 29 6 0.2457 -5.4037 0.4534 30 1 -0.3634 0.6425 0.8020 31 1 -0.3633 0.3732 -0.9575 32 1 -0.3634 -1.0158 0.1555 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.8038 -1.7829 -1.1777 37 1 1.5599 -0.3009 -2.1329 38 1 3.1197 -0.5937 -1.3271 39 1 2.4618 -3.2456 3.2936 40 1 2.7204 -4.7818 2.2400 41 1 1.2860 -4.4037 3.2341 42 1 1.0932 -6.7193 3.4072 43 1 2.0625 -7.0015 1.9258 44 1 0.6564 -8.0834 0.2879 45 1 -0.2776 -8.6038 1.7109 46 1 -2.3363 -7.6532 0.7073 47 1 -1.4022 -7.1327 -0.7157 48 1 -0.9927 -9.9027 -0.3475 49 1 -2.1099 -12.5466 -2.0469 50 1 -0.6936 -5.0254 0.0498 51 1 0.8604 -5.8228 -0.3433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501637321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:58 Heat of formation + Delta-G solvation = 48.417253 kcal Electronic energy + Delta-G solvation = -29239.930919 eV Core-core repulsion = 25369.128471 eV Total energy + Delta-G solvation = -3870.802448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.92788 -39.82608 -37.96884 -36.66821 -35.13057 -33.10108 -31.36683 -31.21288 -30.58982 -29.51770 -27.36562 -27.18392 -26.89994 -24.84843 -23.47033 -22.87366 -22.09702 -21.28770 -20.42703 -20.01170 -18.42434 -17.77273 -17.09731 -16.85159 -16.26572 -15.60428 -15.33622 -15.08604 -14.76979 -14.60508 -14.40211 -14.24173 -13.72917 -13.59333 -13.38329 -13.21187 -13.03723 -12.79924 -12.78473 -12.29792 -12.18593 -12.01826 -11.70009 -11.58211 -11.33470 -11.31658 -11.26516 -11.07999 -11.07556 -10.83939 -10.69864 -10.60097 -10.45831 -10.33149 -9.95417 -9.81849 -9.70538 -9.64665 -9.11975 -8.84778 -8.65758 -6.89319 -5.74345 -3.02664 1.18688 1.91426 2.32643 2.92024 3.26478 3.45677 3.51583 3.53803 4.07433 4.21872 4.36678 4.40769 4.60914 4.66950 4.71803 4.87126 4.95838 4.99228 5.04994 5.15158 5.22638 5.26233 5.34935 5.52725 5.58568 5.59432 5.64352 5.66508 5.76629 5.81735 5.84546 5.85250 5.89425 5.92079 6.00420 6.01738 6.08392 6.15084 6.24649 6.27150 6.37724 6.38670 6.46222 6.53257 6.74280 6.85958 6.89960 7.22723 7.46324 7.73808 8.18789 8.45043 9.56089 10.14348 10.48628 11.48814 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.002242 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.805494 B =12488.397710 C =13691.809432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.017 3.983 3 C -0.137 4.137 4 C -0.148 4.148 5 C 0.150 3.850 6 N -0.297 5.297 7 N -0.465 5.465 8 H 0.443 0.557 9 C 0.089 3.911 10 C -0.279 4.279 11 C 0.602 3.398 12 O -0.523 6.523 13 N -0.615 5.615 14 C 0.093 3.907 15 C -0.130 4.130 16 C -0.094 4.094 17 H 0.085 0.915 18 C -0.115 4.115 19 C 0.151 3.849 20 N -0.735 5.735 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.935 5.935 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.292 1.292 29 C 0.113 3.887 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.092 0.908 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.195 0.805 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.017 0.983 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.084 0.916 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.670 22.470 13.291 29.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 C -0.194 4.194 4 C -0.206 4.206 5 C -0.019 4.019 6 N -0.118 5.118 7 N -0.169 5.169 8 H 0.287 0.713 9 C -0.063 4.063 10 C -0.294 4.294 11 C 0.392 3.608 12 O -0.401 6.401 13 N -0.349 5.349 14 C -0.030 4.030 15 C -0.167 4.167 16 C -0.114 4.114 17 H 0.103 0.897 18 C -0.153 4.153 19 C 0.023 3.977 20 N -0.379 5.379 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.212 4.212 24 N -0.584 5.584 25 Si 0.738 3.262 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.009 4.009 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.211 0.789 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.035 0.965 47 H 0.038 0.962 48 H 0.216 0.784 49 H 0.064 0.936 50 H 0.102 0.898 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.784 23.848 13.061 30.485 hybrid contribution -0.516 -1.273 -0.096 1.377 sum 13.268 22.576 12.965 29.219 Atomic orbital electron populations 1.22103 0.92474 1.04785 1.01219 1.19008 0.96416 0.93891 0.89174 1.21835 1.01089 0.94720 1.01771 1.22092 0.99501 1.03732 0.95236 1.22472 0.93259 0.91209 0.94916 1.77169 1.21719 1.12607 1.00272 1.46174 1.42228 1.07458 1.21077 0.71288 1.23921 0.93879 0.92494 0.96011 1.20226 1.13487 0.96065 0.99635 1.16856 0.80157 0.79775 0.83989 1.90669 1.45948 1.77319 1.26184 1.48337 1.51351 1.07538 1.27658 1.22333 0.97089 0.95028 0.88581 1.22747 0.98510 0.93958 1.01529 1.22346 0.97417 0.95583 0.96053 0.89667 1.21683 0.99792 0.94177 0.99622 1.20685 0.93657 0.89261 0.94063 1.42377 1.28944 1.08661 1.57884 1.19293 1.00708 0.96021 1.20761 0.91119 1.24746 0.98870 0.96272 1.01310 1.69667 1.36329 1.03448 1.48952 0.86115 0.82129 0.77768 0.80212 1.20513 1.21862 1.21902 1.22397 0.97269 0.86223 0.95011 0.93791 0.92155 0.88935 0.92589 0.92244 0.92504 0.89240 0.92084 0.93749 0.78903 0.91304 0.91409 0.89858 0.90083 0.91575 0.91344 0.96467 0.96173 0.78355 0.93614 0.89790 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.20 37.16 0.30 -1.39 16 2 C 0.02 0.19 0.75 -155.66 -0.12 0.08 16 3 C -0.14 -1.31 7.94 37.16 0.30 -1.01 16 4 C -0.15 -1.70 8.19 37.16 0.30 -1.39 16 5 C 0.15 1.73 5.64 -82.02 -0.46 1.26 16 6 N -0.30 -3.15 11.93 33.90 0.40 -2.74 16 7 N -0.47 -3.27 7.29 30.85 0.22 -3.05 16 8 H 0.44 1.44 8.96 -182.73 -1.64 -0.20 16 9 C 0.09 0.64 10.51 -16.56 -0.17 0.47 16 10 C -0.28 -3.03 5.86 -105.06 -0.62 -3.64 16 11 C 0.60 7.60 7.24 -12.52 -0.09 7.51 16 12 O -0.52 -7.93 10.66 5.28 0.06 -7.88 16 13 N -0.62 -6.76 3.33 -171.78 -0.57 -7.33 16 14 C 0.09 0.67 5.01 -3.06 -0.02 0.65 16 15 C -0.13 -1.02 6.42 -24.90 -0.16 -1.18 16 16 C -0.09 -1.05 3.08 -88.47 -0.27 -1.32 16 17 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 18 C -0.11 -1.67 4.84 -26.73 -0.13 -1.80 16 19 C 0.15 2.96 6.11 -4.04 -0.02 2.93 16 20 N -0.73 -18.67 5.60 -59.91 -0.34 -19.01 16 21 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 22 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 23 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 24 N -0.93 -28.46 13.06 55.49 0.72 -27.73 16 25 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 26 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 29 C 0.11 1.40 5.56 -2.53 -0.01 1.39 16 30 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.64 8.07 -51.93 -0.42 0.22 16 32 H 0.09 1.26 4.75 -51.93 -0.25 1.01 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.21 4.61 -51.93 -0.24 0.98 16 37 H 0.06 0.65 8.07 -51.93 -0.42 0.23 16 38 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 39 H 0.19 0.72 4.46 -52.49 -0.23 0.49 16 40 H 0.07 0.39 7.29 -51.93 -0.38 0.01 16 41 H 0.07 0.36 6.56 -51.93 -0.34 0.02 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.08 0.64 8.04 -51.92 -0.42 0.23 16 44 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.02 0.41 7.46 -51.93 -0.39 0.02 16 48 H 0.38 10.14 7.67 -40.82 -0.31 9.83 16 49 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 50 H 0.08 1.19 7.96 -51.93 -0.41 0.77 16 51 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -34.70 392.96 -9.65 -44.35 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -9.63 Total: 4.71 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -1.42 Total: -4.88 kcal Atomic # 7 Polarization: -60.31 SS G_CDS: 0.45 Total: -59.87 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.06 Total: -7.88 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.70 -9.65 -44.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501637321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.769 kcal (2) G-P(sol) polarization free energy of solvation -34.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds