Wall clock time and date at job start Tue Mar 31 2020 20:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46992 * 2 1 4 4 C 1.52998 * 109.47144 * 239.99959 * 2 1 3 5 5 C 1.50698 * 109.47414 * 119.99800 * 2 1 3 6 6 N 1.30447 * 125.99327 * 241.98283 * 5 2 1 7 7 N 1.39935 * 108.90010 * 180.22413 * 6 5 2 8 8 H 0.96993 * 125.75446 * 179.72541 * 7 6 5 9 9 C 1.34261 * 108.49027 * 359.75465 * 7 6 5 10 10 C 1.38041 * 107.41937 * 359.97438 * 9 7 6 11 11 C 1.47428 * 126.42113 * 179.97438 * 10 9 7 12 12 O 1.21600 * 120.00717 * 175.24004 * 11 10 9 13 13 N 1.34783 * 119.99456 * 354.96163 * 11 10 9 14 14 C 1.47026 * 125.64857 * 359.97284 * 13 11 10 15 15 C 1.54327 * 107.26419 * 178.84609 * 14 13 11 16 16 C 1.55155 * 103.02270 * 338.13853 * 15 14 13 17 17 H 1.09000 * 111.04161 * 277.21816 * 16 15 14 18 18 C 1.53003 * 111.00287 * 153.38094 * 16 15 14 19 19 C 1.52998 * 109.47105 * 181.35177 * 18 16 15 20 20 N 1.46503 * 109.47511 * 179.97438 * 19 18 16 21 21 C 1.36933 * 120.00162 * 179.97438 * 20 19 18 22 22 H 1.08001 * 119.99881 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00191 * 180.02562 * 21 20 19 24 24 N 1.31621 * 119.99824 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00311 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47021 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46942 * 120.00341 * 25 23 21 28 28 H 1.48505 * 109.47187 * 240.00211 * 25 23 21 29 29 C 1.47423 * 125.65028 * 180.27537 * 13 11 10 30 30 H 1.08997 * 109.47401 * 308.70185 * 1 2 3 31 31 H 1.08999 * 109.47049 * 68.70389 * 1 2 3 32 32 H 1.09000 * 109.47253 * 188.70160 * 1 2 3 33 33 H 1.09000 * 109.46879 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.47119 * 299.99956 * 3 2 1 35 35 H 1.08994 * 109.46985 * 60.00016 * 3 2 1 36 36 H 1.08997 * 109.47578 * 291.64167 * 4 2 1 37 37 H 1.09002 * 109.47203 * 51.64742 * 4 2 1 38 38 H 1.09003 * 109.47241 * 171.64177 * 4 2 1 39 39 H 1.07997 * 126.28949 * 180.02562 * 9 7 6 40 40 H 1.08996 * 109.88252 * 298.39062 * 14 13 11 41 41 H 1.08998 * 109.88117 * 59.55449 * 14 13 11 42 42 H 1.09002 * 110.85181 * 219.67059 * 15 14 13 43 43 H 1.09007 * 110.67009 * 96.52530 * 15 14 13 44 44 H 1.08998 * 109.47420 * 301.34791 * 18 16 15 45 45 H 1.08999 * 109.47075 * 61.35001 * 18 16 15 46 46 H 1.09005 * 109.47295 * 300.00143 * 19 18 16 47 47 H 1.09004 * 109.47107 * 59.99555 * 19 18 16 48 48 H 0.97001 * 119.99557 * 0.02562 * 20 19 18 49 49 H 0.96992 * 120.00203 * 179.97438 * 24 23 21 50 50 H 1.09006 * 110.36544 * 322.93457 * 29 13 11 51 51 H 1.09000 * 110.36475 * 85.25234 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2304 6 7 2.7554 -0.1821 2.1791 7 7 3.0234 -1.1606 3.1429 8 1 3.5446 -1.0326 3.9508 9 6 2.4381 -2.3067 2.7604 10 6 1.7993 -2.0642 1.5609 11 6 1.0249 -3.0374 0.7692 12 8 0.4362 -2.6761 -0.2315 13 7 0.9740 -4.3288 1.1517 14 6 1.6407 -4.9001 2.3310 15 6 1.2767 -6.3990 2.3816 16 6 -0.0265 -6.4708 1.5427 17 1 -0.8947 -6.2022 2.1445 18 6 -0.2022 -7.8574 0.9202 19 6 -1.4775 -7.8792 0.0751 20 7 -1.6455 -9.2067 -0.5215 21 6 -2.7246 -9.4651 -1.3238 22 1 -3.4517 -8.6902 -1.5172 23 6 -2.8841 -10.7230 -1.8887 24 7 -1.9983 -11.6675 -1.6526 25 14 -4.3558 -11.0755 -2.9838 26 1 -5.1966 -9.8561 -3.0906 27 1 -3.8838 -11.4707 -4.3352 28 1 -5.1566 -12.1797 -2.3966 29 6 0.2457 -5.4037 0.4534 30 1 -0.3634 0.6425 0.8020 31 1 -0.3633 0.3732 -0.9575 32 1 -0.3634 -1.0158 0.1555 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6766 1.9563 0.8899 36 1 1.8038 -1.7829 -1.1777 37 1 1.5599 -0.3009 -2.1329 38 1 3.1197 -0.5937 -1.3271 39 1 2.4618 -3.2456 3.2936 40 1 2.7204 -4.7818 2.2400 41 1 1.2860 -4.4037 3.2341 42 1 1.0932 -6.7193 3.4072 43 1 2.0625 -7.0015 1.9258 44 1 0.6564 -8.0834 0.2879 45 1 -0.2776 -8.6038 1.7109 46 1 -2.3363 -7.6532 0.7073 47 1 -1.4022 -7.1327 -0.7157 48 1 -0.9927 -9.9027 -0.3475 49 1 -2.1099 -12.5466 -2.0469 50 1 -0.6936 -5.0254 0.0498 51 1 0.8604 -5.8228 -0.3433 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501637321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:56 Heat of formation + Delta-G solvation = 25.125098 kcal Electronic energy + Delta-G solvation = -29240.940943 eV Core-core repulsion = 25369.128471 eV Total energy + Delta-G solvation = -3871.812471 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.64176 -40.67286 -38.88596 -37.56459 -36.75128 -34.55910 -32.82209 -32.01509 -31.42476 -30.65957 -28.45001 -28.09678 -27.92128 -26.10939 -24.91218 -23.69935 -23.13161 -22.41717 -21.32550 -20.94123 -19.20239 -19.13822 -18.49248 -17.65742 -17.21324 -16.62956 -16.47359 -16.15985 -15.85038 -15.69202 -15.37808 -15.24344 -15.16943 -15.02324 -14.47162 -14.36847 -14.10955 -13.80083 -13.64760 -13.29455 -13.05284 -12.97008 -12.91988 -12.86804 -12.81686 -12.40962 -12.26931 -12.18359 -12.09428 -12.06076 -11.94646 -11.91893 -11.67080 -11.50714 -11.41676 -11.35460 -10.92846 -10.63402 -10.53137 -9.86842 -9.48497 -8.99494 -7.96043 -5.24469 0.54798 1.09874 1.47003 1.47869 1.58156 1.75054 2.12661 2.42564 2.55851 3.33781 3.37645 3.53263 3.63190 3.67539 3.85791 3.98946 4.07594 4.11730 4.19786 4.31034 4.34253 4.38970 4.46463 4.47543 4.56226 4.58375 4.67723 4.80314 4.82170 4.83023 4.87580 4.95167 4.96482 5.00378 5.02547 5.08960 5.11808 5.17424 5.20490 5.26793 5.36099 5.42520 5.45719 5.49509 5.52498 5.52760 5.64616 6.27676 6.27845 6.51375 6.66079 7.31014 7.33484 8.10296 8.33457 9.27714 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018359 B = 0.002242 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.805494 B =12488.397710 C =13691.809432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 C -0.129 4.129 4 C -0.143 4.143 5 C 0.134 3.866 6 N -0.317 5.317 7 N -0.448 5.448 8 H 0.461 0.539 9 C 0.120 3.880 10 C -0.311 4.311 11 C 0.594 3.406 12 O -0.561 6.561 13 N -0.616 5.616 14 C 0.086 3.914 15 C -0.119 4.119 16 C -0.086 4.086 17 H 0.089 0.911 18 C -0.100 4.100 19 C 0.148 3.852 20 N -0.748 5.748 21 C -0.246 4.246 22 H 0.071 0.929 23 C -0.076 4.076 24 N -0.968 5.968 25 Si 0.972 3.028 26 H -0.269 1.269 27 H -0.292 1.292 28 H -0.290 1.290 29 C 0.114 3.886 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.235 0.765 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.017 0.983 47 H 0.013 0.987 48 H 0.375 0.625 49 H 0.252 0.748 50 H 0.055 0.945 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.793 23.187 15.702 31.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 C -0.186 4.186 4 C -0.200 4.200 5 C -0.034 4.034 6 N -0.139 5.139 7 N -0.154 5.154 8 H 0.309 0.691 9 C -0.033 4.033 10 C -0.326 4.326 11 C 0.386 3.614 12 O -0.443 6.443 13 N -0.349 5.349 14 C -0.036 4.036 15 C -0.157 4.157 16 C -0.106 4.106 17 H 0.107 0.893 18 C -0.138 4.138 19 C 0.021 3.979 20 N -0.391 5.391 21 C -0.378 4.378 22 H 0.089 0.911 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.801 3.199 26 H -0.193 1.193 27 H -0.219 1.219 28 H -0.217 1.217 29 C -0.009 4.009 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.250 0.750 40 H 0.112 0.888 41 H 0.116 0.884 42 H 0.129 0.871 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.092 0.908 46 H 0.035 0.965 47 H 0.031 0.969 48 H 0.207 0.793 49 H 0.061 0.939 50 H 0.074 0.926 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 14.934 24.609 15.528 32.707 hybrid contribution -0.843 -1.463 -0.803 1.869 sum 14.092 23.147 14.725 30.841 Atomic orbital electron populations 1.22014 0.93163 1.03422 1.01438 1.19001 0.95916 0.94728 0.89234 1.21759 1.00915 0.93771 1.02179 1.22007 0.99721 1.02452 0.95851 1.22505 0.93867 0.91799 0.95226 1.77102 1.22039 1.13872 1.00871 1.46208 1.41464 1.06789 1.20942 0.69054 1.24371 0.91216 0.93428 0.94329 1.20181 1.15418 0.95616 1.01376 1.17211 0.79981 0.80390 0.83815 1.90649 1.47578 1.78105 1.27944 1.48361 1.51191 1.06770 1.28555 1.22666 0.98390 0.94473 0.88047 1.22747 0.96089 0.94626 1.02221 1.22203 0.99840 0.92610 0.95908 0.89261 1.21522 0.96721 0.96655 0.98896 1.20874 0.96354 0.86345 0.94280 1.42611 1.28060 1.10494 1.57901 1.19659 1.01338 0.96097 1.20684 0.91061 1.25566 1.01804 0.96276 1.03201 1.69808 1.38154 1.03673 1.50293 0.85087 0.78982 0.77755 0.78043 1.19315 1.21919 1.21686 1.22210 0.96026 0.87197 0.95485 0.93391 0.91922 0.91103 0.92674 0.91276 0.92600 0.91398 0.91860 0.93350 0.74961 0.88828 0.88411 0.87121 0.89867 0.91950 0.90787 0.96486 0.96908 0.79306 0.93918 0.92593 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 8.20 71.98 0.59 -2.80 16 2 C 0.01 0.30 0.75 -52.93 -0.04 0.26 16 3 C -0.13 -2.40 7.94 71.98 0.57 -1.83 16 4 C -0.14 -3.39 8.19 71.98 0.59 -2.80 16 5 C 0.13 2.98 5.64 43.52 0.25 3.23 16 6 N -0.32 -6.17 11.93 -46.67 -0.56 -6.73 16 7 N -0.45 -4.80 7.29 -56.32 -0.41 -5.21 16 8 H 0.46 1.18 8.96 -213.44 -1.91 -0.73 16 9 C 0.12 1.29 10.51 84.27 0.89 2.18 16 10 C -0.31 -6.30 5.86 -20.15 -0.12 -6.42 16 11 C 0.59 14.97 7.24 86.66 0.63 15.60 16 12 O -0.56 -18.03 10.66 -4.03 -0.04 -18.07 16 13 N -0.62 -12.81 3.33 -815.65 -2.71 -15.52 16 14 C 0.09 0.89 5.01 86.73 0.43 1.33 16 15 C -0.12 -1.44 6.42 31.78 0.20 -1.23 16 16 C -0.09 -1.79 3.08 -9.40 -0.03 -1.81 16 17 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 18 C -0.10 -2.84 4.84 30.59 0.15 -2.69 16 19 C 0.15 5.87 6.11 86.38 0.53 6.40 16 20 N -0.75 -38.67 5.60 -343.44 -1.92 -40.60 16 21 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 22 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 24 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 25 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 26 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 27 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 29 C 0.11 2.86 5.56 86.85 0.48 3.34 16 30 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 31 H 0.06 1.38 8.07 -2.39 -0.02 1.36 16 32 H 0.07 2.04 4.75 -2.39 -0.01 2.03 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.07 1.95 4.61 -2.39 -0.01 1.94 16 37 H 0.06 1.40 8.07 -2.39 -0.02 1.38 16 38 H 0.05 1.06 8.13 -2.39 -0.02 1.04 16 39 H 0.23 0.40 4.46 -2.91 -0.01 0.38 16 40 H 0.09 0.59 7.29 -2.39 -0.02 0.57 16 41 H 0.10 0.48 6.56 -2.39 -0.02 0.47 16 42 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.08 1.02 8.04 -2.38 -0.02 1.00 16 44 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 45 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.02 0.69 8.14 -2.38 -0.02 0.67 16 47 H 0.01 0.53 7.46 -2.38 -0.02 0.52 16 48 H 0.37 20.26 7.67 -92.71 -0.71 19.55 16 49 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 50 H 0.06 1.69 7.96 -2.38 -0.02 1.67 16 51 H 0.06 1.60 8.00 -2.39 -0.02 1.59 16 Total: -1.00 -78.45 392.96 1.42 -77.03 By element: Atomic # 1 Polarization: 25.77 SS G_CDS: -1.67 Total: 24.09 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 6.43 Total: -4.53 kcal Atomic # 7 Polarization: -122.21 SS G_CDS: -5.32 Total: -127.53 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.04 Total: -18.07 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -78.45 1.42 -77.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501637321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.155 kcal (2) G-P(sol) polarization free energy of solvation -78.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds