Wall clock time and date at job start Tue Mar 31 2020 18:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47175 * 2 1 4 4 C 1.34668 * 126.58891 * 274.97476 * 3 2 1 5 5 N 1.34127 * 108.02124 * 180.02562 * 4 3 2 6 6 C 1.30502 * 109.25442 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.64935 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47310 * 305.02438 * 7 6 5 9 9 O 1.21280 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00157 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99848 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.46846 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.44788 * 294.94467 * 12 11 10 14 14 C 1.54863 * 109.44742 * 174.99973 * 12 11 10 15 15 C 1.47098 * 110.32279 * 168.69189 * 14 12 11 16 16 C 1.52570 * 114.32118 * 62.80177 * 15 14 12 17 17 C 1.50879 * 109.35852 * 274.98761 * 16 15 14 18 18 C 1.53945 * 110.09537 * 91.89295 * 17 16 15 19 19 N 1.44580 * 109.45086 * 54.86925 * 12 11 10 20 20 C 1.36940 * 118.63917 * 30.76688 * 19 12 11 21 21 H 1.07994 * 120.00167 * 27.75200 * 20 19 12 22 22 C 1.38814 * 119.99569 * 207.75318 * 20 19 12 23 23 N 1.31624 * 119.99866 * 14.60972 * 22 20 19 24 24 Si 1.86798 * 120.00137 * 194.61010 * 22 20 19 25 25 H 1.48490 * 109.47286 * 94.96559 * 24 22 20 26 26 H 1.48497 * 109.47207 * 214.96886 * 24 22 20 27 27 H 1.48498 * 109.46866 * 334.96693 * 24 22 20 28 28 N 1.35038 * 108.70041 * 0.02562 * 6 5 4 29 29 H 0.97010 * 126.39792 * 179.97438 * 28 6 5 30 30 H 1.09004 * 109.46905 * 60.00655 * 1 2 3 31 31 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47408 * 300.00091 * 1 2 3 33 33 H 1.09001 * 109.47884 * 239.99815 * 2 1 3 34 34 H 1.09004 * 109.46905 * 119.99344 * 2 1 3 35 35 H 1.07999 * 125.99146 * 0.04805 * 4 3 2 36 36 H 1.09001 * 109.47154 * 65.02772 * 7 6 5 37 37 H 1.09000 * 109.47045 * 185.02859 * 7 6 5 38 38 H 0.96999 * 119.99902 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47206 * 299.99930 * 11 10 8 40 40 H 1.08999 * 109.47417 * 60.00416 * 11 10 8 41 41 H 1.08996 * 109.33218 * 288.95392 * 14 12 11 42 42 H 1.09002 * 109.32723 * 48.60386 * 14 12 11 43 43 H 1.08999 * 108.51280 * 184.05643 * 15 14 12 44 44 H 1.09001 * 108.51053 * 301.70414 * 15 14 12 45 45 H 1.08995 * 109.49049 * 34.96001 * 16 15 14 46 46 H 1.09000 * 109.48398 * 155.02398 * 16 15 14 47 47 H 1.09007 * 109.36752 * 212.08008 * 17 16 15 48 48 H 1.09002 * 109.36928 * 331.69491 * 17 16 15 49 49 H 1.08997 * 108.95004 * 80.11875 * 18 17 16 50 50 H 1.09007 * 108.94760 * 198.75348 * 18 17 16 51 51 H 0.97006 * 119.99763 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2115 2.2089 -1.0772 5 7 2.6708 3.3951 -0.6518 6 6 2.7825 3.3722 0.6482 7 6 3.2657 4.5113 1.5085 8 6 4.6210 4.9633 1.0287 9 8 5.1428 4.4148 0.0813 10 7 5.2526 5.9777 1.6519 11 6 6.5698 6.4174 1.1852 12 6 7.0605 7.5739 2.0587 13 1 6.4053 8.4343 1.9232 14 6 8.5039 7.9549 1.6466 15 6 8.8969 9.2244 2.2772 16 6 8.9381 9.1824 3.8018 17 6 7.5564 9.4474 4.3469 18 6 6.8047 8.1196 4.5511 19 7 7.0431 7.1698 3.4467 20 6 7.2568 5.8514 3.7493 21 1 7.8509 5.2356 3.0904 22 6 6.7096 5.3066 4.9028 23 7 5.7637 5.9526 5.5512 24 14 7.3157 3.6567 5.5351 25 1 8.3667 3.8754 6.5610 26 1 6.1822 2.9111 6.1388 27 1 7.8801 2.8717 4.4079 28 7 2.3944 2.1583 1.0948 29 1 2.3758 1.8639 2.0190 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0188 1.9341 -2.1037 36 1 2.5616 5.3407 1.4423 37 1 3.3392 4.1788 2.5439 38 1 4.8351 6.4166 2.4095 39 1 7.2742 5.5882 1.2514 40 1 6.4961 6.7497 0.1497 41 1 9.1888 7.1680 1.9622 42 1 8.5531 8.0628 0.5630 43 1 9.8859 9.5007 1.9118 44 1 8.1890 9.9955 1.9734 45 1 9.2760 8.1993 4.1295 46 1 9.6259 9.9445 4.1681 47 1 7.6379 9.9671 5.3016 48 1 7.0040 10.0712 3.6441 49 1 7.1349 7.6660 5.4856 50 1 5.7360 8.3243 4.6172 51 1 5.3816 5.5721 6.3576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506561810.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:05 Heat of formation + Delta-G solvation = 25.081993 kcal Electronic energy + Delta-G solvation = -29926.803252 eV Core-core repulsion = 26054.988911 eV Total energy + Delta-G solvation = -3871.814341 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.95651 -39.02964 -37.93842 -34.48086 -34.16394 -33.45755 -32.32138 -31.80488 -30.91958 -30.62448 -27.47154 -26.50408 -25.43815 -23.50136 -23.40311 -22.21751 -20.89665 -20.60814 -19.91034 -19.29015 -19.13408 -17.28957 -16.76364 -16.00442 -15.62572 -15.07938 -14.89658 -14.82367 -14.50726 -14.42974 -14.15860 -13.95787 -13.57379 -13.52094 -13.31689 -12.88977 -12.82596 -12.70424 -12.36605 -12.13063 -11.93053 -11.91108 -11.71852 -11.38224 -11.35898 -11.18526 -11.07303 -10.90513 -10.60795 -10.22160 -10.02807 -9.97989 -9.79254 -9.71577 -9.65296 -9.58923 -9.53521 -9.14423 -8.45864 -8.11877 -8.03976 -6.73164 -5.85958 -3.29960 2.13047 3.11229 3.29225 3.31444 3.37639 3.41707 3.42457 4.09418 4.43048 4.54416 4.75541 4.81128 5.10985 5.19338 5.24828 5.32036 5.42082 5.43701 5.46054 5.50308 5.57636 5.58523 5.64344 5.65404 5.73242 5.91970 5.93830 5.96802 6.02786 6.10765 6.17006 6.35989 6.39046 6.39671 6.57971 6.63584 6.66318 6.71760 6.77287 6.84526 6.92668 7.00462 7.11333 7.33618 7.40347 7.49101 7.65377 7.79113 8.33943 8.38531 8.40731 9.03528 9.17293 9.82032 10.27095 11.20507 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003194 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.179504 B = 8763.258447 C = 9925.166686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.045 4.045 3 C -0.032 4.032 4 C -0.023 4.023 5 N -0.461 5.461 6 C 0.232 3.768 7 C -0.057 4.057 8 C 0.516 3.484 9 O -0.540 6.540 10 N -0.692 5.692 11 C 0.133 3.867 12 C 0.173 3.827 13 H 0.045 0.955 14 C -0.136 4.136 15 C -0.101 4.101 16 C -0.106 4.106 17 C -0.143 4.143 18 C 0.180 3.820 19 N -0.584 5.584 20 C -0.243 4.243 21 H 0.063 0.937 22 C 0.010 3.990 23 N -0.904 5.904 24 Si 0.890 3.110 25 H -0.289 1.289 26 H -0.294 1.294 27 H -0.280 1.280 28 N -0.563 5.563 29 H 0.415 0.585 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.164 0.836 36 H 0.114 0.886 37 H 0.108 0.892 38 H 0.410 0.590 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.040 0.960 44 H 0.046 0.954 45 H 0.073 0.927 46 H 0.039 0.961 47 H 0.048 0.952 48 H 0.043 0.957 49 H 0.074 0.926 50 H 0.024 0.976 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 -2.677 -5.345 9.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 C -0.148 4.148 4 C -0.172 4.172 5 N -0.179 5.179 6 C -0.032 4.032 7 C -0.099 4.099 8 C 0.300 3.700 9 O -0.418 6.418 10 N -0.343 5.343 11 C 0.008 3.992 12 C 0.064 3.936 13 H 0.063 0.937 14 C -0.177 4.177 15 C -0.139 4.139 16 C -0.144 4.144 17 C -0.182 4.182 18 C 0.056 3.944 19 N -0.306 5.306 20 C -0.373 4.373 21 H 0.081 0.919 22 C -0.188 4.188 23 N -0.549 5.549 24 Si 0.721 3.279 25 H -0.216 1.216 26 H -0.220 1.220 27 H -0.206 1.206 28 N -0.166 5.166 29 H 0.253 0.747 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.182 0.818 36 H 0.132 0.868 37 H 0.126 0.874 38 H 0.246 0.754 39 H 0.083 0.917 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.065 0.935 45 H 0.092 0.908 46 H 0.058 0.942 47 H 0.067 0.933 48 H 0.062 0.938 49 H 0.092 0.908 50 H 0.042 0.958 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.478 -2.403 -6.426 9.435 hybrid contribution 0.061 -1.550 1.924 2.472 sum -6.416 -3.953 -4.501 8.778 Atomic orbital electron populations 1.21773 0.94646 1.01640 1.02379 1.19944 0.95825 0.89382 1.03230 1.21150 1.09867 0.96300 0.87473 1.22060 1.06046 0.90737 0.98363 1.70247 1.16763 1.22983 1.07899 1.22372 1.02996 0.86818 0.91003 1.19951 0.96706 0.94913 0.98322 1.19831 0.86326 0.80505 0.83356 1.90701 1.67362 1.55682 1.28049 1.45586 1.19557 1.34879 1.34230 1.21430 0.84318 0.97835 0.95644 1.20516 0.93243 0.94120 0.85672 0.93692 1.21374 1.00134 0.97870 0.98342 1.20295 0.99591 0.97867 0.96101 1.20946 0.96885 1.01652 0.94925 1.22067 0.96577 1.00256 0.99293 1.21007 0.95766 0.85973 0.91696 1.43736 1.83221 1.04996 0.98618 1.19088 1.24958 0.86386 1.06855 0.91902 1.24892 0.96668 0.97235 1.00012 1.70039 1.26325 1.38983 1.19600 0.86456 0.78050 0.84450 0.78988 1.21589 1.22028 1.20574 1.43122 1.51403 1.12494 1.09618 0.74710 0.92100 0.92264 0.92923 0.89625 0.91436 0.81825 0.86849 0.87420 0.75406 0.91651 0.93226 0.91870 0.93273 0.94114 0.93509 0.90831 0.94240 0.93311 0.93798 0.90779 0.95767 0.93846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.89 37.15 0.37 -0.76 16 2 C -0.05 -0.41 6.49 -27.88 -0.18 -0.59 16 3 C -0.03 -0.42 6.49 -81.60 -0.53 -0.95 16 4 C -0.02 -0.35 11.79 -17.81 -0.21 -0.56 16 5 N -0.46 -8.45 10.58 -10.82 -0.11 -8.56 16 6 C 0.23 3.83 6.96 -155.42 -1.08 2.75 16 7 C -0.06 -0.89 6.33 -29.04 -0.18 -1.07 16 8 C 0.52 10.02 7.82 -10.99 -0.09 9.94 16 9 O -0.54 -12.48 15.55 5.56 0.09 -12.39 16 10 N -0.69 -13.15 4.71 -60.29 -0.28 -13.44 16 11 C 0.13 2.54 4.53 -4.04 -0.02 2.52 16 12 C 0.17 3.20 2.19 -67.97 -0.15 3.05 16 13 H 0.05 0.82 8.06 -51.93 -0.42 0.40 16 14 C -0.14 -2.29 5.06 -28.58 -0.14 -2.43 16 15 C -0.10 -1.57 5.16 -29.78 -0.15 -1.73 16 16 C -0.11 -1.78 5.51 -28.02 -0.15 -1.93 16 17 C -0.14 -2.49 5.71 -27.30 -0.16 -2.64 16 18 C 0.18 3.79 4.66 -2.95 -0.01 3.78 16 19 N -0.58 -12.32 1.77 -164.46 -0.29 -12.61 16 20 C -0.24 -5.81 7.64 -15.06 -0.12 -5.92 16 21 H 0.06 1.60 6.72 -52.49 -0.35 1.24 16 22 C 0.01 0.25 4.89 -17.43 -0.09 0.16 16 23 N -0.90 -22.84 11.03 55.49 0.61 -22.22 16 24 Si 0.89 20.60 29.58 -169.99 -5.03 15.58 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 N -0.56 -7.60 6.15 -6.54 -0.04 -7.64 16 29 H 0.42 4.42 8.96 -40.82 -0.37 4.06 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.16 2.06 8.06 -52.49 -0.42 1.63 16 36 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.41 7.86 8.07 -40.82 -0.33 7.53 16 39 H 0.07 1.41 6.83 -51.93 -0.35 1.05 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.05 0.74 8.11 -51.93 -0.42 0.32 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.70 7.35 -51.93 -0.38 0.32 16 45 H 0.07 1.42 7.48 -51.93 -0.39 1.03 16 46 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 48 H 0.04 0.73 7.31 -51.93 -0.38 0.35 16 49 H 0.07 1.78 6.39 -51.93 -0.33 1.45 16 50 H 0.02 0.55 8.02 -51.93 -0.42 0.13 16 51 H 0.25 6.33 8.31 -40.82 -0.34 6.00 16 LS Contribution 399.21 15.07 6.02 6.02 Total: -1.00 -30.06 399.21 -10.71 -40.77 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -8.77 Total: 10.88 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: -2.89 Total: 3.62 kcal Atomic # 7 Polarization: -64.35 SS G_CDS: -0.12 Total: -64.47 kcal Atomic # 8 Polarization: -12.48 SS G_CDS: 0.09 Total: -12.39 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.03 Total: 15.58 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.06 -10.71 -40.77 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506561810.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.848 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds