Wall clock time and date at job start Tue Mar 31 2020 18:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.47175 * 2 1 4 4 C 1.34668 * 126.58891 * 274.97476 * 3 2 1 5 5 N 1.34127 * 108.02124 * 180.02562 * 4 3 2 6 6 C 1.30502 * 109.25442 * 359.97438 * 5 4 3 7 7 C 1.50700 * 125.64935 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47310 * 305.02438 * 7 6 5 9 9 O 1.21280 * 120.00023 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00157 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99848 * 180.02562 * 10 8 7 12 12 C 1.53009 * 109.46846 * 180.02562 * 11 10 8 13 13 H 1.09001 * 109.44788 * 294.94467 * 12 11 10 14 14 C 1.54863 * 109.44742 * 174.99973 * 12 11 10 15 15 C 1.47098 * 110.32279 * 168.69189 * 14 12 11 16 16 C 1.52570 * 114.32118 * 62.80177 * 15 14 12 17 17 C 1.50879 * 109.35852 * 274.98761 * 16 15 14 18 18 C 1.53945 * 110.09537 * 91.89295 * 17 16 15 19 19 N 1.44580 * 109.45086 * 54.86925 * 12 11 10 20 20 C 1.36940 * 118.63917 * 30.76688 * 19 12 11 21 21 H 1.07994 * 120.00167 * 27.75200 * 20 19 12 22 22 C 1.38814 * 119.99569 * 207.75318 * 20 19 12 23 23 N 1.31624 * 119.99866 * 14.60972 * 22 20 19 24 24 Si 1.86798 * 120.00137 * 194.61010 * 22 20 19 25 25 H 1.48490 * 109.47286 * 94.96559 * 24 22 20 26 26 H 1.48497 * 109.47207 * 214.96886 * 24 22 20 27 27 H 1.48498 * 109.46866 * 334.96693 * 24 22 20 28 28 N 1.35038 * 108.70041 * 0.02562 * 6 5 4 29 29 H 0.97010 * 126.39792 * 179.97438 * 28 6 5 30 30 H 1.09004 * 109.46905 * 60.00655 * 1 2 3 31 31 H 1.08998 * 109.47049 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47408 * 300.00091 * 1 2 3 33 33 H 1.09001 * 109.47884 * 239.99815 * 2 1 3 34 34 H 1.09004 * 109.46905 * 119.99344 * 2 1 3 35 35 H 1.07999 * 125.99146 * 0.04805 * 4 3 2 36 36 H 1.09001 * 109.47154 * 65.02772 * 7 6 5 37 37 H 1.09000 * 109.47045 * 185.02859 * 7 6 5 38 38 H 0.96999 * 119.99902 * 0.02562 * 10 8 7 39 39 H 1.09001 * 109.47206 * 299.99930 * 11 10 8 40 40 H 1.08999 * 109.47417 * 60.00416 * 11 10 8 41 41 H 1.08996 * 109.33218 * 288.95392 * 14 12 11 42 42 H 1.09002 * 109.32723 * 48.60386 * 14 12 11 43 43 H 1.08999 * 108.51280 * 184.05643 * 15 14 12 44 44 H 1.09001 * 108.51053 * 301.70414 * 15 14 12 45 45 H 1.08995 * 109.49049 * 34.96001 * 16 15 14 46 46 H 1.09000 * 109.48398 * 155.02398 * 16 15 14 47 47 H 1.09007 * 109.36752 * 212.08008 * 17 16 15 48 48 H 1.09002 * 109.36928 * 331.69491 * 17 16 15 49 49 H 1.08997 * 108.95004 * 80.11875 * 18 17 16 50 50 H 1.09007 * 108.94760 * 198.75348 * 18 17 16 51 51 H 0.97006 * 119.99763 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2115 2.2089 -1.0772 5 7 2.6708 3.3951 -0.6518 6 6 2.7825 3.3722 0.6482 7 6 3.2657 4.5113 1.5085 8 6 4.6210 4.9633 1.0287 9 8 5.1428 4.4148 0.0813 10 7 5.2526 5.9777 1.6519 11 6 6.5698 6.4174 1.1852 12 6 7.0605 7.5739 2.0587 13 1 6.4053 8.4343 1.9232 14 6 8.5039 7.9549 1.6466 15 6 8.8969 9.2244 2.2772 16 6 8.9381 9.1824 3.8018 17 6 7.5564 9.4474 4.3469 18 6 6.8047 8.1196 4.5511 19 7 7.0431 7.1698 3.4467 20 6 7.2568 5.8514 3.7493 21 1 7.8509 5.2356 3.0904 22 6 6.7096 5.3066 4.9028 23 7 5.7637 5.9526 5.5512 24 14 7.3157 3.6567 5.5351 25 1 8.3667 3.8754 6.5610 26 1 6.1822 2.9111 6.1388 27 1 7.8801 2.8717 4.4079 28 7 2.3944 2.1583 1.0948 29 1 2.3758 1.8639 2.0190 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.0188 1.9341 -2.1037 36 1 2.5616 5.3407 1.4423 37 1 3.3392 4.1788 2.5439 38 1 4.8351 6.4166 2.4095 39 1 7.2742 5.5882 1.2514 40 1 6.4961 6.7497 0.1497 41 1 9.1888 7.1680 1.9622 42 1 8.5531 8.0628 0.5630 43 1 9.8859 9.5007 1.9118 44 1 8.1890 9.9955 1.9734 45 1 9.2760 8.1993 4.1295 46 1 9.6259 9.9445 4.1681 47 1 7.6379 9.9671 5.3016 48 1 7.0040 10.0712 3.6441 49 1 7.1349 7.6660 5.4856 50 1 5.7360 8.3243 4.6172 51 1 5.3816 5.5721 6.3576 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506561810.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:03 Heat of formation + Delta-G solvation = 7.964001 kcal Electronic energy + Delta-G solvation = -29927.545544 eV Core-core repulsion = 26054.988911 eV Total energy + Delta-G solvation = -3872.556632 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -43.08438 -40.59240 -39.47682 -35.95484 -35.20336 -35.05075 -33.56403 -33.20390 -32.45996 -32.00714 -28.83400 -27.90129 -26.93343 -25.18099 -24.29685 -23.66155 -22.13436 -21.78178 -21.32614 -20.76667 -20.65512 -18.51501 -18.24518 -17.61152 -17.26789 -16.54986 -16.31607 -16.19508 -15.81024 -15.76219 -15.33140 -15.19114 -15.10497 -14.80488 -14.46117 -14.35161 -14.23847 -13.92422 -13.67659 -13.36038 -13.32745 -13.18923 -13.01666 -12.82951 -12.80355 -12.65682 -12.44045 -12.35457 -12.02902 -11.98965 -11.52061 -11.38656 -11.30308 -11.18427 -11.03699 -10.96566 -10.82794 -10.69372 -10.33171 -9.72321 -9.15603 -8.52749 -7.76648 -5.19798 1.02785 1.39918 1.46540 1.51341 1.84276 1.99626 2.20535 2.53249 2.70038 3.37326 3.39176 3.62829 3.89627 4.04381 4.06524 4.11896 4.12383 4.18511 4.29683 4.37880 4.44790 4.46416 4.52629 4.57315 4.64203 4.69428 4.72605 4.76649 4.87334 4.96829 5.03144 5.05610 5.10483 5.15826 5.28203 5.29019 5.35150 5.40248 5.41377 5.44826 5.57534 5.68874 5.74091 5.78944 5.83234 5.84203 5.94283 6.46188 6.50221 6.84213 7.19267 7.29651 7.49121 8.03291 8.41776 9.26631 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.003194 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.179504 B = 8763.258447 C = 9925.166686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.044 4.044 3 C -0.013 4.013 4 C -0.057 4.057 5 N -0.502 5.502 6 C 0.208 3.792 7 C -0.048 4.048 8 C 0.512 3.488 9 O -0.581 6.581 10 N -0.690 5.690 11 C 0.137 3.863 12 C 0.175 3.825 13 H 0.058 0.942 14 C -0.129 4.129 15 C -0.100 4.100 16 C -0.103 4.103 17 C -0.133 4.133 18 C 0.189 3.811 19 N -0.587 5.587 20 C -0.231 4.231 21 H 0.044 0.956 22 C -0.022 4.022 23 N -0.916 5.916 24 Si 0.928 3.072 25 H -0.295 1.295 26 H -0.293 1.293 27 H -0.291 1.291 28 N -0.556 5.556 29 H 0.428 0.572 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.180 0.820 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.410 0.590 39 H 0.036 0.964 40 H 0.060 0.940 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.062 0.938 47 H 0.060 0.940 48 H 0.059 0.941 49 H 0.039 0.961 50 H 0.006 0.994 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -2.299 -5.598 9.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.129 4.129 4 C -0.205 4.205 5 N -0.221 5.221 6 C -0.057 4.057 7 C -0.089 4.089 8 C 0.297 3.703 9 O -0.462 6.462 10 N -0.339 5.339 11 C 0.012 3.988 12 C 0.067 3.933 13 H 0.076 0.924 14 C -0.170 4.170 15 C -0.138 4.138 16 C -0.141 4.141 17 C -0.172 4.172 18 C 0.065 3.935 19 N -0.309 5.309 20 C -0.362 4.362 21 H 0.062 0.938 22 C -0.218 4.218 23 N -0.563 5.563 24 Si 0.760 3.240 25 H -0.222 1.222 26 H -0.219 1.219 27 H -0.217 1.217 28 N -0.160 5.160 29 H 0.268 0.732 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.197 0.803 36 H 0.154 0.846 37 H 0.140 0.860 38 H 0.246 0.754 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.058 0.942 50 H 0.024 0.976 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -6.985 -2.009 -6.662 9.859 hybrid contribution 0.244 -1.706 1.947 2.600 sum -6.741 -3.715 -4.715 9.027 Atomic orbital electron populations 1.21735 0.93400 1.02886 1.01946 1.20124 0.96732 0.86802 1.04555 1.21761 1.07270 0.97408 0.86501 1.22473 1.07457 0.90607 0.99951 1.70149 1.17879 1.24945 1.09159 1.22399 1.04392 0.87988 0.90888 1.19922 0.94661 0.95711 0.98649 1.20483 0.87418 0.79785 0.82596 1.90673 1.68702 1.56911 1.29885 1.45625 1.19398 1.34860 1.34017 1.21372 0.83924 0.97045 0.96463 1.20651 0.94726 0.94016 0.83920 0.92370 1.21295 0.97908 0.97979 0.99797 1.20277 1.01191 0.97267 0.95028 1.20905 0.96682 1.00580 0.95927 1.21946 0.96644 0.98046 1.00545 1.20799 0.95111 0.87412 0.90228 1.43767 1.83157 1.04120 0.99869 1.18975 1.23633 0.87410 1.06144 0.93785 1.25183 0.97346 0.98713 1.00595 1.70114 1.27052 1.39448 1.19676 0.85869 0.77384 0.82811 0.77937 1.22213 1.21923 1.21678 1.43124 1.50613 1.11731 1.10553 0.73171 0.92497 0.90178 0.93432 0.88250 0.90142 0.80312 0.84606 0.85970 0.75376 0.94542 0.92230 0.94098 0.91166 0.92105 0.91971 0.94006 0.91918 0.92120 0.92185 0.94227 0.97562 0.94356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.89 71.98 0.71 -1.14 16 2 C -0.04 -0.68 6.49 29.85 0.19 -0.49 16 3 C -0.01 -0.32 6.49 40.95 0.27 -0.05 16 4 C -0.06 -1.72 11.79 83.52 0.98 -0.73 16 5 N -0.50 -18.63 10.58 -188.14 -1.99 -20.62 16 6 C 0.21 6.82 6.96 138.13 0.96 7.78 16 7 C -0.05 -1.48 6.33 29.10 0.18 -1.30 16 8 C 0.51 20.12 7.82 87.66 0.69 20.80 16 9 O -0.58 -27.52 15.55 -3.03 -0.05 -27.57 16 10 N -0.69 -26.38 4.71 -463.05 -2.18 -28.56 16 11 C 0.14 5.27 4.53 86.38 0.39 5.66 16 12 C 0.17 6.30 2.19 45.99 0.10 6.40 16 13 H 0.06 1.99 8.06 -2.39 -0.02 1.97 16 14 C -0.13 -4.13 5.06 29.40 0.15 -3.98 16 15 C -0.10 -2.82 5.16 28.62 0.15 -2.67 16 16 C -0.10 -3.23 5.51 29.76 0.16 -3.06 16 17 C -0.13 -4.35 5.71 30.22 0.17 -4.18 16 18 C 0.19 7.93 4.66 86.49 0.40 8.33 16 19 N -0.59 -24.79 1.77 -674.23 -1.20 -25.99 16 20 C -0.23 -11.23 7.64 84.03 0.64 -10.59 16 21 H 0.04 2.31 6.72 -2.91 -0.02 2.30 16 22 C -0.02 -1.10 4.89 84.86 0.41 -0.69 16 23 N -0.92 -46.80 11.03 21.65 0.24 -46.56 16 24 Si 0.93 42.95 29.58 68.60 2.03 44.98 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 28 N -0.56 -14.50 6.15 -174.60 -1.07 -15.57 16 29 H 0.43 8.56 8.96 -92.70 -0.83 7.73 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.18 4.48 8.06 -2.91 -0.02 4.45 16 36 H 0.14 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 38 H 0.41 15.72 8.07 -92.71 -0.75 14.97 16 39 H 0.04 1.61 6.83 -2.39 -0.02 1.60 16 40 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.06 1.60 7.35 -2.39 -0.02 1.58 16 45 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 46 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 48 H 0.06 1.79 7.31 -2.39 -0.02 1.78 16 49 H 0.04 1.93 6.39 -2.39 -0.02 1.91 16 50 H 0.01 0.28 8.02 -2.38 -0.02 0.26 16 51 H 0.25 12.55 8.31 -92.70 -0.77 11.78 16 Total: -1.00 -66.67 399.21 1.70 -64.97 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.65 Total: 34.82 kcal Atomic # 6 Polarization: 13.54 SS G_CDS: 6.57 Total: 20.11 kcal Atomic # 7 Polarization: -131.10 SS G_CDS: -6.20 Total: -137.31 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -0.05 Total: -27.57 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -66.67 1.70 -64.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506561810.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.933 kcal (2) G-P(sol) polarization free energy of solvation -66.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.07 seconds