Wall clock time and date at job start Tue Mar 31 2020 18:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47064 * 2 1 4 4 N 1.30497 * 125.65336 * 270.17244 * 3 2 1 5 5 C 1.34129 * 109.25710 * 180.29387 * 4 3 2 6 6 C 1.34668 * 108.01908 * 359.72928 * 5 4 3 7 7 N 1.35040 * 125.64673 * 90.00628 * 3 2 1 8 8 C 1.46504 * 126.40131 * 359.96987 * 7 3 2 9 9 H 1.09004 * 109.46835 * 359.71344 * 8 7 3 10 10 C 1.52996 * 109.47594 * 119.71563 * 8 7 3 11 11 C 1.53000 * 109.47432 * 239.72052 * 8 7 3 12 12 C 1.50696 * 109.47554 * 174.99627 * 11 8 7 13 13 O 1.21283 * 119.99592 * 359.97438 * 12 11 8 14 14 N 1.34769 * 120.00479 * 179.97438 * 12 11 8 15 15 C 1.46500 * 120.00200 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47215 * 325.00077 * 15 14 12 17 17 C 1.53003 * 109.46880 * 85.00184 * 15 14 12 18 18 C 1.53008 * 109.47037 * 204.99725 * 15 14 12 19 19 C 1.53497 * 114.20384 * 179.97438 * 18 15 14 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 15 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08001 * 120.00168 * 7.92391 * 21 20 19 23 23 C 1.38807 * 120.00154 * 187.92753 * 21 20 19 24 24 N 1.31620 * 120.00181 * 195.15567 * 23 21 20 25 25 Si 1.86800 * 119.99868 * 15.15620 * 23 21 20 26 26 H 1.48503 * 109.47270 * 270.00075 * 25 23 21 27 27 H 1.48502 * 109.47339 * 30.00381 * 25 23 21 28 28 H 1.48506 * 109.47014 * 149.99865 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09004 * 109.46885 * 59.99697 * 1 2 3 31 31 H 1.09001 * 109.47487 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47065 * 300.00037 * 1 2 3 33 33 H 1.09006 * 109.46655 * 240.00061 * 2 1 3 34 34 H 1.08997 * 109.46719 * 120.00653 * 2 1 3 35 35 H 1.07994 * 125.99203 * 179.72003 * 5 4 3 36 36 H 1.08002 * 126.59434 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.46806 * 59.99732 * 10 8 7 38 38 H 1.08994 * 109.47522 * 180.02562 * 10 8 7 39 39 H 1.09003 * 109.46912 * 300.00651 * 10 8 7 40 40 H 1.09005 * 109.46834 * 54.99292 * 11 8 7 41 41 H 1.09000 * 109.47036 * 294.99570 * 11 8 7 42 42 H 0.97004 * 119.99869 * 0.02562 * 14 12 11 43 43 H 1.09002 * 109.47110 * 60.00426 * 17 15 14 44 44 H 1.09006 * 109.46761 * 179.97438 * 17 15 14 45 45 H 1.08995 * 109.46842 * 299.99501 * 17 15 14 46 46 H 1.09008 * 113.41028 * 46.80551 * 18 15 14 47 47 H 1.08996 * 113.46841 * 332.74047 * 19 18 15 48 48 H 1.08998 * 113.51535 * 202.31022 * 19 18 15 49 49 H 0.97002 * 120.00096 * 354.91189 * 24 23 21 50 50 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 51 51 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1390 -1.0604 5 6 2.7189 3.3496 -0.6818 6 6 2.7337 3.3849 0.6644 7 7 2.2948 2.1628 1.0974 8 6 2.1438 1.7372 2.4911 9 1 1.7753 0.7117 2.5199 10 6 3.4991 1.8121 3.1970 11 6 1.1478 2.6570 3.2003 12 6 0.8990 2.1470 4.5963 13 8 1.4625 1.1460 4.9855 14 7 0.0505 2.8030 5.4122 15 6 -0.1909 2.3075 6.7696 16 1 -0.1653 1.2178 6.7685 17 6 0.8928 2.8423 7.7080 18 6 -1.5628 2.7849 7.2503 19 6 -1.9283 2.3240 8.6681 20 7 -1.2445 3.5221 9.1778 21 6 -0.6029 3.8738 10.3353 22 1 -0.4088 3.1289 11.0929 23 6 -0.2020 5.1876 10.5351 24 7 0.6624 5.4748 11.4852 25 14 -0.8895 6.5482 9.4555 26 1 -0.0179 6.7246 8.2662 27 1 -2.2606 6.1857 9.0150 28 1 -0.9367 7.8162 10.2271 29 6 -1.5586 4.1785 7.8998 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.0078 4.1549 -1.3409 36 1 3.0338 4.2175 1.2834 37 1 3.8675 2.8376 3.1680 38 1 3.3869 1.4951 4.2337 39 1 4.2086 1.1568 2.6917 40 1 0.2092 2.6721 2.6462 41 1 1.5569 3.6661 3.2497 42 1 -0.4005 3.6034 5.1008 43 1 0.8670 3.9320 7.7091 44 1 0.7129 2.4739 8.7180 45 1 1.8700 2.5022 7.3655 46 1 -2.3544 2.6387 6.5152 47 1 -1.4451 1.3914 8.9594 48 1 -3.0009 2.3211 8.8616 49 1 0.9632 4.7812 12.0930 50 1 -2.5340 4.6650 7.8899 51 1 -0.7604 4.8258 7.5365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506624498.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:50 Heat of formation + Delta-G solvation = 81.208625 kcal Electronic energy + Delta-G solvation = -29599.952824 eV Core-core repulsion = 25730.572317 eV Total energy + Delta-G solvation = -3869.380507 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.41972 -40.26208 -38.99574 -36.00055 -34.68124 -34.08891 -32.47200 -31.29938 -30.12521 -28.84609 -28.14634 -27.81840 -25.44110 -24.36413 -24.01821 -23.23798 -21.61422 -20.99160 -20.28943 -19.53523 -18.93679 -17.75833 -17.49269 -16.54674 -16.24591 -15.72976 -15.52801 -15.21496 -15.07603 -14.93237 -14.43860 -14.22683 -13.84801 -13.80327 -13.69969 -13.47184 -13.31355 -13.17456 -12.71719 -12.58453 -12.17239 -11.95129 -11.87258 -11.81949 -11.78220 -11.55575 -11.39253 -11.35265 -11.26439 -10.82518 -10.61579 -10.39325 -10.24831 -10.14162 -9.90549 -9.76324 -9.48252 -9.22796 -8.95865 -8.70097 -8.55837 -7.19138 -6.34597 -3.27220 1.83130 2.39531 2.52063 2.96214 3.20509 3.31757 3.40520 3.55176 4.10927 4.14444 4.36578 4.46699 4.52643 4.62423 4.71271 4.77944 4.87493 4.92972 4.94466 5.04786 5.10207 5.11939 5.13526 5.30943 5.34979 5.37576 5.49582 5.51996 5.58595 5.59637 5.70491 5.78642 5.85113 5.93517 5.95095 6.12174 6.15356 6.16755 6.24030 6.31216 6.37139 6.48294 6.57881 6.71070 6.84852 6.98315 7.07067 7.22762 7.48392 7.92484 8.14497 8.19600 8.92600 9.45834 10.32441 11.14899 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.002535 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.392413 B =11042.667656 C =11474.873401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.041 4.041 3 C 0.208 3.792 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.055 4.055 7 N -0.448 5.448 8 C 0.148 3.852 9 H 0.111 0.889 10 C -0.167 4.167 11 C -0.153 4.153 12 C 0.519 3.481 13 O -0.540 6.540 14 N -0.718 5.718 15 C 0.172 3.828 16 H 0.084 0.916 17 C -0.146 4.146 18 C -0.146 4.146 19 C 0.127 3.873 20 N -0.619 5.619 21 C -0.301 4.301 22 H 0.081 0.919 23 C -0.022 4.022 24 N -0.932 5.932 25 Si 1.060 2.940 26 H -0.295 1.295 27 H -0.283 1.283 28 H -0.296 1.296 29 C 0.104 3.896 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.094 0.906 34 H 0.078 0.922 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.399 0.601 43 H 0.059 0.941 44 H 0.092 0.908 45 H 0.034 0.966 46 H 0.077 0.923 47 H 0.047 0.953 48 H 0.039 0.961 49 H 0.262 0.738 50 H 0.044 0.956 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.196 -7.529 -22.395 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.054 4.054 4 N -0.212 5.212 5 C -0.179 4.179 6 C -0.188 4.188 7 N -0.131 5.131 8 C 0.045 3.955 9 H 0.129 0.871 10 C -0.224 4.224 11 C -0.194 4.194 12 C 0.304 3.696 13 O -0.418 6.418 14 N -0.368 5.368 15 C 0.069 3.931 16 H 0.102 0.898 17 C -0.204 4.204 18 C -0.166 4.166 19 C 0.000 4.000 20 N -0.347 5.347 21 C -0.427 4.427 22 H 0.099 0.901 23 C -0.222 4.222 24 N -0.574 5.574 25 Si 0.892 3.108 26 H -0.223 1.223 27 H -0.209 1.209 28 H -0.224 1.224 29 C -0.022 4.022 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.097 0.903 35 H 0.185 0.815 36 H 0.188 0.812 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.080 0.920 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.232 0.768 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.053 0.947 46 H 0.095 0.905 47 H 0.066 0.934 48 H 0.056 0.944 49 H 0.072 0.928 50 H 0.061 0.939 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.326 -6.862 -22.816 23.828 hybrid contribution -0.393 -0.502 1.138 1.304 sum -0.067 -7.365 -21.678 22.895 Atomic orbital electron populations 1.21742 0.93882 1.02379 1.02468 1.19986 0.96504 0.87505 1.04018 1.23264 1.04117 0.96616 0.81379 1.70232 1.18363 1.04307 1.28290 1.22255 1.06563 0.96333 0.92771 1.22637 1.09228 0.90201 0.96746 1.45630 1.48479 1.11858 1.07114 1.21162 0.97331 0.99677 0.77374 0.87105 1.22292 0.94301 1.02653 1.03171 1.22007 1.01420 1.01464 0.94484 1.20104 0.79235 0.83911 0.86353 1.90691 1.48881 1.25597 1.76596 1.46176 1.45623 1.30014 1.14950 1.20654 0.94187 0.98720 0.79589 0.89795 1.22156 0.95502 1.02029 1.00674 1.23243 0.95914 0.99835 0.97583 1.22319 0.95722 0.92804 0.89146 1.46321 1.62545 1.11820 1.14028 1.20069 1.31968 0.95664 0.94994 0.90086 1.25696 0.98008 0.97029 1.01448 1.70892 1.29617 1.36908 1.19966 0.83808 0.76033 0.76157 0.74799 1.22295 1.20895 1.22387 1.22763 0.98416 0.93920 0.87091 0.91865 0.91532 0.92852 0.88753 0.90331 0.81516 0.81155 0.92174 0.88174 0.91990 0.88265 0.88037 0.76759 0.92214 0.88901 0.94662 0.90483 0.93444 0.94393 0.92795 0.93850 0.92917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.89 37.16 0.37 -0.67 16 2 C -0.04 -0.33 6.08 -27.88 -0.17 -0.50 16 3 C 0.21 2.21 7.16 -155.42 -1.11 1.10 16 4 N -0.49 -6.10 11.25 -10.82 -0.12 -6.22 16 5 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 6 C -0.06 -0.51 10.70 -16.56 -0.18 -0.69 16 7 N -0.45 -4.28 2.61 -106.83 -0.28 -4.56 16 8 C 0.15 1.32 2.64 -67.93 -0.18 1.14 16 9 H 0.11 1.02 6.49 -51.93 -0.34 0.68 16 10 C -0.17 -1.58 8.99 37.16 0.33 -1.25 16 11 C -0.15 -1.28 5.18 -27.88 -0.14 -1.42 16 12 C 0.52 6.02 7.51 -10.99 -0.08 5.94 16 13 O -0.54 -7.94 13.63 5.56 0.08 -7.86 16 14 N -0.72 -8.50 5.08 -53.80 -0.27 -8.77 16 15 C 0.17 2.57 2.76 -67.92 -0.19 2.38 16 16 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 17 C -0.15 -2.69 8.06 37.16 0.30 -2.40 16 18 C -0.15 -2.20 4.25 -89.97 -0.38 -2.58 16 19 C 0.13 2.27 7.86 -8.50 -0.07 2.20 16 20 N -0.62 -13.80 2.02 -184.60 -0.37 -14.17 16 21 C -0.30 -8.07 9.87 -15.06 -0.15 -8.22 16 22 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 23 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 24 N -0.93 -28.46 13.70 55.49 0.76 -27.70 16 25 Si 1.06 25.42 25.51 -169.99 -4.34 21.08 16 26 H -0.30 -6.72 6.97 56.52 0.39 -6.32 16 27 H -0.28 -6.26 5.66 56.52 0.32 -5.94 16 28 H -0.30 -7.34 7.11 56.52 0.40 -6.93 16 29 C 0.10 1.94 4.60 -8.37 -0.04 1.91 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.55 7.08 -51.93 -0.37 0.18 16 35 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 36 H 0.17 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.06 0.53 7.95 -51.93 -0.41 0.12 16 38 H 0.10 1.15 5.95 -51.93 -0.31 0.84 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 42 H 0.40 3.83 8.60 -40.82 -0.35 3.48 16 43 H 0.06 1.22 6.31 -51.93 -0.33 0.89 16 44 H 0.09 1.99 5.92 -51.93 -0.31 1.68 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.08 0.96 8.14 -51.92 -0.42 0.53 16 47 H 0.05 0.84 8.12 -51.93 -0.42 0.41 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.26 7.93 8.73 -40.82 -0.36 7.57 16 50 H 0.04 0.81 7.02 -51.93 -0.36 0.45 16 51 H 0.05 1.02 4.82 -51.93 -0.25 0.77 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -32.98 396.56 -9.14 -42.13 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.58 Total: 4.42 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -1.99 Total: -4.32 kcal Atomic # 7 Polarization: -61.13 SS G_CDS: -0.29 Total: -61.41 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: 0.08 Total: -7.86 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -4.34 Total: 21.08 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.98 -9.14 -42.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506624498.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.334 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds