Wall clock time and date at job start Tue Mar 31 2020 18:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47064 * 2 1 4 4 N 1.30497 * 125.65336 * 270.17244 * 3 2 1 5 5 C 1.34129 * 109.25710 * 180.29387 * 4 3 2 6 6 C 1.34668 * 108.01908 * 359.72928 * 5 4 3 7 7 N 1.35040 * 125.64673 * 90.00628 * 3 2 1 8 8 C 1.46504 * 126.40131 * 359.96987 * 7 3 2 9 9 H 1.09004 * 109.46835 * 359.71344 * 8 7 3 10 10 C 1.52996 * 109.47594 * 119.71563 * 8 7 3 11 11 C 1.53000 * 109.47432 * 239.72052 * 8 7 3 12 12 C 1.50696 * 109.47554 * 174.99627 * 11 8 7 13 13 O 1.21283 * 119.99592 * 359.97438 * 12 11 8 14 14 N 1.34769 * 120.00479 * 179.97438 * 12 11 8 15 15 C 1.46500 * 120.00200 * 180.02562 * 14 12 11 16 16 H 1.08999 * 109.47215 * 325.00077 * 15 14 12 17 17 C 1.53003 * 109.46880 * 85.00184 * 15 14 12 18 18 C 1.53008 * 109.47037 * 204.99725 * 15 14 12 19 19 C 1.53497 * 114.20384 * 179.97438 * 18 15 14 20 20 N 1.47070 * 87.98301 * 87.52522 * 19 18 15 21 21 C 1.36932 * 136.05620 * 207.08686 * 20 19 18 22 22 H 1.08001 * 120.00168 * 7.92391 * 21 20 19 23 23 C 1.38807 * 120.00154 * 187.92753 * 21 20 19 24 24 N 1.31620 * 120.00181 * 195.15567 * 23 21 20 25 25 Si 1.86800 * 119.99868 * 15.15620 * 23 21 20 26 26 H 1.48503 * 109.47270 * 270.00075 * 25 23 21 27 27 H 1.48502 * 109.47339 * 30.00381 * 25 23 21 28 28 H 1.48506 * 109.47014 * 149.99865 * 25 23 21 29 29 C 1.47068 * 87.88415 * 27.33811 * 20 19 18 30 30 H 1.09004 * 109.46885 * 59.99697 * 1 2 3 31 31 H 1.09001 * 109.47487 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47065 * 300.00037 * 1 2 3 33 33 H 1.09006 * 109.46655 * 240.00061 * 2 1 3 34 34 H 1.08997 * 109.46719 * 120.00653 * 2 1 3 35 35 H 1.07994 * 125.99203 * 179.72003 * 5 4 3 36 36 H 1.08002 * 126.59434 * 180.02562 * 6 5 4 37 37 H 1.09000 * 109.46806 * 59.99732 * 10 8 7 38 38 H 1.08994 * 109.47522 * 180.02562 * 10 8 7 39 39 H 1.09003 * 109.46912 * 300.00651 * 10 8 7 40 40 H 1.09005 * 109.46834 * 54.99292 * 11 8 7 41 41 H 1.09000 * 109.47036 * 294.99570 * 11 8 7 42 42 H 0.97004 * 119.99869 * 0.02562 * 14 12 11 43 43 H 1.09002 * 109.47110 * 60.00426 * 17 15 14 44 44 H 1.09006 * 109.46761 * 179.97438 * 17 15 14 45 45 H 1.08995 * 109.46842 * 299.99501 * 17 15 14 46 46 H 1.09008 * 113.41028 * 46.80551 * 18 15 14 47 47 H 1.08996 * 113.46841 * 332.74047 * 19 18 15 48 48 H 1.08998 * 113.51535 * 202.31022 * 19 18 15 49 49 H 0.97002 * 120.00096 * 354.91189 * 24 23 21 50 50 H 1.09005 * 113.46482 * 87.44223 * 29 20 19 51 51 H 1.09000 * 113.46807 * 217.87726 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2829 2.1390 -1.0604 5 6 2.7189 3.3496 -0.6818 6 6 2.7337 3.3849 0.6644 7 7 2.2948 2.1628 1.0974 8 6 2.1438 1.7372 2.4911 9 1 1.7753 0.7117 2.5199 10 6 3.4991 1.8121 3.1970 11 6 1.1478 2.6570 3.2003 12 6 0.8990 2.1470 4.5963 13 8 1.4625 1.1460 4.9855 14 7 0.0505 2.8030 5.4122 15 6 -0.1909 2.3075 6.7696 16 1 -0.1653 1.2178 6.7685 17 6 0.8928 2.8423 7.7080 18 6 -1.5628 2.7849 7.2503 19 6 -1.9283 2.3240 8.6681 20 7 -1.2445 3.5221 9.1778 21 6 -0.6029 3.8738 10.3353 22 1 -0.4088 3.1289 11.0929 23 6 -0.2020 5.1876 10.5351 24 7 0.6624 5.4748 11.4852 25 14 -0.8895 6.5482 9.4555 26 1 -0.0179 6.7246 8.2662 27 1 -2.2606 6.1857 9.0150 28 1 -0.9367 7.8162 10.2271 29 6 -1.5586 4.1785 7.8998 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.0078 4.1549 -1.3409 36 1 3.0338 4.2175 1.2834 37 1 3.8675 2.8376 3.1680 38 1 3.3869 1.4951 4.2337 39 1 4.2086 1.1568 2.6917 40 1 0.2092 2.6721 2.6462 41 1 1.5569 3.6661 3.2497 42 1 -0.4005 3.6034 5.1008 43 1 0.8670 3.9320 7.7091 44 1 0.7129 2.4739 8.7180 45 1 1.8700 2.5022 7.3655 46 1 -2.3544 2.6387 6.5152 47 1 -1.4451 1.3914 8.9594 48 1 -3.0009 2.3211 8.8616 49 1 0.9632 4.7812 12.0930 50 1 -2.5340 4.6650 7.8899 51 1 -0.7604 4.8258 7.5365 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506624498.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:50:48 Heat of formation + Delta-G solvation = 60.532662 kcal Electronic energy + Delta-G solvation = -29600.849401 eV Core-core repulsion = 25730.572317 eV Total energy + Delta-G solvation = -3870.277084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -43.14597 -41.42063 -40.25784 -36.84151 -35.84830 -34.68652 -34.46522 -32.24169 -31.24694 -29.83264 -29.52085 -28.74694 -26.92545 -25.70059 -24.83539 -24.10120 -22.93480 -22.01398 -21.25587 -20.53586 -20.13856 -19.32453 -18.52414 -17.52961 -17.26591 -16.94179 -16.49293 -16.46480 -16.12016 -15.79670 -15.70117 -15.22419 -15.19138 -15.05724 -14.60046 -14.36004 -14.33072 -14.03146 -13.83091 -13.46219 -13.38985 -13.17270 -13.03534 -12.99202 -12.82144 -12.54630 -12.52173 -12.50091 -12.19539 -12.14522 -11.95314 -11.84731 -11.79770 -11.35181 -11.11736 -10.94896 -10.76550 -10.69663 -10.55664 -10.06137 -9.27288 -9.10042 -8.54030 -5.37405 1.11753 1.39718 1.53102 1.58713 1.66903 1.67224 2.20710 2.28511 2.58537 3.12522 3.23710 3.40506 3.49369 3.54530 3.65816 3.77117 3.83245 3.93660 4.09262 4.24173 4.27970 4.37591 4.43485 4.47195 4.48542 4.51878 4.52611 4.67370 4.68743 4.72056 4.74916 4.80318 4.83374 4.87456 4.89287 5.00819 5.02119 5.07200 5.10032 5.17828 5.29984 5.30761 5.36975 5.44688 5.53204 5.66501 5.88195 6.02958 6.27240 6.57285 6.77332 7.19024 7.25380 7.41752 8.36807 8.97208 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.002535 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.392413 B =11042.667656 C =11474.873401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.198 3.802 4 N -0.528 5.528 5 C -0.053 4.053 6 C -0.051 4.051 7 N -0.446 5.446 8 C 0.152 3.848 9 H 0.109 0.891 10 C -0.162 4.162 11 C -0.141 4.141 12 C 0.520 3.480 13 O -0.572 6.572 14 N -0.710 5.710 15 C 0.183 3.817 16 H 0.082 0.918 17 C -0.133 4.133 18 C -0.112 4.112 19 C 0.121 3.879 20 N -0.650 5.650 21 C -0.273 4.273 22 H 0.042 0.958 23 C -0.087 4.087 24 N -0.976 5.976 25 Si 1.099 2.901 26 H -0.276 1.276 27 H -0.248 1.248 28 H -0.313 1.313 29 C 0.097 3.903 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.181 0.819 36 H 0.196 0.804 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.414 0.586 43 H 0.039 0.961 44 H 0.055 0.945 45 H 0.029 0.971 46 H 0.126 0.874 47 H 0.042 0.958 48 H 0.060 0.940 49 H 0.243 0.757 50 H 0.061 0.939 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.202 -7.356 -25.536 26.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.064 4.064 4 N -0.248 5.248 5 C -0.200 4.200 6 C -0.184 4.184 7 N -0.129 5.129 8 C 0.049 3.951 9 H 0.127 0.873 10 C -0.220 4.220 11 C -0.181 4.181 12 C 0.307 3.693 13 O -0.452 6.452 14 N -0.361 5.361 15 C 0.078 3.922 16 H 0.100 0.900 17 C -0.191 4.191 18 C -0.131 4.131 19 C -0.005 4.005 20 N -0.379 5.379 21 C -0.400 4.400 22 H 0.060 0.940 23 C -0.279 4.279 24 N -0.622 5.622 25 Si 0.925 3.075 26 H -0.203 1.203 27 H -0.172 1.172 28 H -0.241 1.241 29 C -0.027 4.027 30 H 0.071 0.929 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.114 0.886 34 H 0.106 0.894 35 H 0.198 0.802 36 H 0.213 0.787 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.251 0.749 43 H 0.059 0.941 44 H 0.074 0.926 45 H 0.048 0.952 46 H 0.144 0.856 47 H 0.061 0.939 48 H 0.077 0.923 49 H 0.053 0.947 50 H 0.079 0.921 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.724 -6.721 -26.023 26.933 hybrid contribution 0.278 -0.725 2.109 2.247 sum -1.445 -7.447 -23.915 25.089 Atomic orbital electron populations 1.21697 0.93115 1.03228 1.01848 1.20093 0.97111 0.86376 1.04541 1.23682 1.03969 0.97412 0.81362 1.70209 1.19617 1.05431 1.29530 1.22632 1.07145 0.96395 0.93854 1.23035 1.08116 0.90540 0.96670 1.45644 1.48317 1.11898 1.06994 1.21101 0.97080 0.99886 0.77053 0.87309 1.22207 0.94815 1.03026 1.01904 1.21940 1.02287 1.01811 0.92066 1.20608 0.78169 0.83205 0.87287 1.90699 1.49880 1.27164 1.77429 1.45961 1.46017 1.30681 1.13463 1.20308 0.92916 0.98465 0.80529 0.89965 1.21956 0.96939 1.00470 0.99735 1.23025 0.96898 0.96287 0.96919 1.22581 0.96314 0.91007 0.90594 1.46337 1.63376 1.14480 1.13679 1.19806 1.30485 0.94421 0.95334 0.93974 1.26971 0.98409 0.99861 1.02615 1.71013 1.32737 1.36482 1.21984 0.83368 0.77470 0.72793 0.73884 1.20270 1.17250 1.24139 1.23007 0.98774 0.95813 0.85140 0.92922 0.89977 0.92913 0.88648 0.89382 0.80173 0.78676 0.91347 0.90164 0.92209 0.86228 0.86204 0.74906 0.94149 0.92644 0.95166 0.85599 0.93935 0.92263 0.94733 0.92129 0.93343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 9.89 71.98 0.71 -0.99 16 2 C -0.04 -0.60 6.08 29.85 0.18 -0.42 16 3 C 0.20 3.87 7.16 138.13 0.99 4.85 16 4 N -0.53 -12.45 11.25 -188.14 -2.12 -14.57 16 5 C -0.05 -1.03 11.87 83.52 0.99 -0.04 16 6 C -0.05 -0.81 10.70 83.09 0.89 0.08 16 7 N -0.45 -7.41 2.61 -491.90 -1.28 -8.69 16 8 C 0.15 2.31 2.64 44.99 0.12 2.43 16 9 H 0.11 1.74 6.49 -2.39 -0.02 1.72 16 10 C -0.16 -2.78 8.99 71.98 0.65 -2.13 16 11 C -0.14 -1.81 5.18 29.85 0.15 -1.65 16 12 C 0.52 10.43 7.51 87.66 0.66 11.09 16 13 O -0.57 -15.74 13.63 -3.04 -0.04 -15.78 16 14 N -0.71 -14.06 5.08 -442.53 -2.25 -16.31 16 15 C 0.18 4.95 2.76 45.00 0.12 5.07 16 16 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 17 C -0.13 -4.86 8.06 71.98 0.58 -4.28 16 18 C -0.11 -2.88 4.25 -10.37 -0.04 -2.92 16 19 C 0.12 3.99 7.86 83.18 0.65 4.64 16 20 N -0.65 -28.19 2.02 -737.94 -1.49 -29.68 16 21 C -0.27 -15.01 9.87 84.03 0.83 -14.18 16 22 H 0.04 2.58 8.06 -2.91 -0.02 2.56 16 23 C -0.09 -5.04 5.50 84.86 0.47 -4.57 16 24 N -0.98 -62.36 13.70 21.65 0.30 -62.07 16 25 Si 1.10 50.66 25.51 68.60 1.75 52.41 16 26 H -0.28 -11.73 6.97 99.48 0.69 -11.04 16 27 H -0.25 -9.90 5.66 99.48 0.56 -9.34 16 28 H -0.31 -15.17 7.11 99.48 0.71 -14.46 16 29 C 0.10 3.27 4.60 83.26 0.38 3.65 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.09 1.06 7.08 -2.39 -0.02 1.04 16 35 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 36 H 0.20 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.07 1.04 7.95 -2.39 -0.02 1.02 16 38 H 0.08 1.76 5.95 -2.39 -0.01 1.74 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.12 1.18 8.09 -2.39 -0.02 1.17 16 42 H 0.41 5.84 8.60 -92.71 -0.80 5.04 16 43 H 0.04 1.61 6.31 -2.39 -0.02 1.60 16 44 H 0.05 2.43 5.92 -2.38 -0.01 2.42 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.13 2.22 8.14 -2.38 -0.02 2.20 16 47 H 0.04 1.44 8.12 -2.39 -0.02 1.42 16 48 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 49 H 0.24 15.76 8.73 -92.71 -0.81 14.95 16 50 H 0.06 1.92 7.02 -2.38 -0.02 1.90 16 51 H 0.05 1.70 4.82 -2.39 -0.01 1.69 16 Total: -1.00 -76.26 396.56 3.13 -73.13 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -0.07 Total: 20.91 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: 8.33 Total: 0.63 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -6.84 Total: -131.31 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.04 Total: -15.78 kcal Atomic # 14 Polarization: 50.66 SS G_CDS: 1.75 Total: 52.41 kcal Total: -76.26 3.13 -73.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506624498.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.663 kcal (2) G-P(sol) polarization free energy of solvation -76.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds