Wall clock time and date at job start Tue Mar 31 2020 19:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47164 * 2 1 4 4 N 1.30289 * 126.34609 * 270.04647 * 3 2 1 5 5 N 1.28531 * 110.05445 * 179.97438 * 4 3 2 6 6 C 1.31225 * 109.85705 * 359.74282 * 5 4 3 7 7 N 1.38577 * 126.47372 * 180.25991 * 6 5 4 8 8 C 1.46901 * 110.99885 * 106.87181 * 7 6 5 9 9 C 1.50698 * 109.47591 * 298.61886 * 8 7 6 10 10 H 1.08000 * 119.99530 * 5.01550 * 9 8 7 11 11 C 1.37878 * 120.00015 * 185.01058 * 9 8 7 12 12 N 1.31510 * 120.00303 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99820 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47006 * 90.00212 * 13 11 9 15 15 H 1.48495 * 109.46842 * 210.00183 * 13 11 9 16 16 H 1.48501 * 109.47170 * 330.00213 * 13 11 9 17 17 C 1.46901 * 110.99857 * 342.92204 * 7 6 5 18 18 C 1.53003 * 109.47013 * 195.39162 * 17 7 6 19 19 C 1.52999 * 117.49979 * 243.43259 * 18 17 7 20 20 C 1.52998 * 117.50143 * 174.76924 * 18 17 7 21 21 N 1.36453 * 107.05116 * 0.40086 * 6 5 4 22 22 C 1.46495 * 127.13266 * 179.87542 * 21 6 5 23 23 C 1.53006 * 109.47343 * 272.44760 * 22 21 6 24 24 C 1.53002 * 112.99610 * 48.17265 * 23 22 21 25 25 C 1.54040 * 113.81395 * 276.18959 * 23 22 21 26 26 O 1.44172 * 85.51382 * 223.19126 * 25 23 22 27 27 C 1.44179 * 93.34365 * 24.19807 * 26 25 23 28 28 H 1.09002 * 109.47232 * 60.00176 * 1 2 3 29 29 H 1.08999 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47077 * 299.99782 * 1 2 3 31 31 H 1.09009 * 109.46867 * 240.00325 * 2 1 3 32 32 H 1.08994 * 109.47419 * 120.00445 * 2 1 3 33 33 H 1.08999 * 109.47243 * 58.62302 * 8 7 6 34 34 H 1.09005 * 109.47241 * 178.62039 * 8 7 6 35 35 H 0.96995 * 120.00518 * 179.97438 * 12 11 9 36 36 H 1.09001 * 109.47501 * 315.39172 * 17 7 6 37 37 H 1.09006 * 109.47123 * 75.39338 * 17 7 6 38 38 H 1.09005 * 115.55077 * 29.10092 * 18 17 7 39 39 H 1.08995 * 117.50154 * 359.97438 * 19 18 17 40 40 H 1.09000 * 117.49583 * 145.02227 * 19 18 17 41 41 H 1.09003 * 117.50052 * 214.98230 * 20 18 17 42 42 H 1.09006 * 117.49548 * 359.97438 * 20 18 17 43 43 H 1.09004 * 109.47647 * 32.44958 * 22 21 6 44 44 H 1.09006 * 109.47019 * 152.45215 * 22 21 6 45 45 H 1.09001 * 109.46458 * 60.00413 * 24 23 22 46 46 H 1.08997 * 109.46703 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47287 * 300.00724 * 24 23 22 48 48 H 1.08994 * 113.86526 * 337.34301 * 25 23 22 49 49 H 1.09006 * 113.85930 * 109.04904 * 25 23 22 50 50 H 1.09001 * 113.86539 * 221.66245 * 27 26 25 51 51 H 1.08994 * 113.86662 * 89.94893 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2890 2.1491 -1.0494 5 7 2.7000 3.3123 -0.6888 6 6 2.7226 3.3909 0.6209 7 7 3.1039 4.4900 1.3737 8 6 1.9374 5.1368 1.9893 9 6 1.0060 5.6252 0.9101 10 1 1.2142 5.4001 -0.1255 11 6 -0.1121 6.3594 1.2447 12 7 -0.3655 6.6339 2.5056 13 14 -1.2671 6.9642 -0.0931 14 1 -2.3167 5.9430 -0.3398 15 1 -1.9039 8.2340 0.3396 16 1 -0.4989 7.1963 -1.3426 17 6 3.8676 5.4458 0.5605 18 6 4.5902 6.4336 1.4787 19 6 4.1944 7.9083 1.3810 20 6 5.5415 7.4386 0.8262 21 7 2.3027 2.1848 1.1014 22 6 2.1643 1.7920 2.5059 23 6 3.4967 1.2379 3.0143 24 6 4.6880 2.1326 2.6661 25 6 3.7168 -0.2511 2.6865 26 8 4.2039 -0.3602 4.0390 27 6 3.4632 0.7923 4.4884 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.4157 4.4188 2.6220 34 1 2.2674 5.9815 2.5941 35 1 -1.1518 7.1506 2.7410 36 1 4.5995 4.9073 -0.0416 37 1 3.1876 5.9899 -0.0951 38 1 4.8613 6.0494 2.4621 39 1 3.4195 8.1748 0.6623 40 1 4.2055 8.4942 2.3000 41 1 6.4383 7.7158 1.3804 42 1 5.6529 7.3958 -0.2573 43 1 1.8817 2.6611 3.1001 44 1 1.3944 1.0254 2.5946 45 1 4.5463 3.1165 3.1134 46 1 5.6035 1.6859 3.0540 47 1 4.7627 2.2332 1.5834 48 1 2.7951 -0.8033 2.5037 49 1 4.4792 -0.4275 1.9276 50 1 4.0244 1.4433 5.1586 51 1 2.4641 0.5586 4.8558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001513821311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:40 Heat of formation + Delta-G solvation = 97.674160 kcal Electronic energy + Delta-G solvation = -31509.750617 eV Core-core repulsion = 27641.084109 eV Total energy + Delta-G solvation = -3868.666508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.45146 -40.68041 -37.88249 -35.65647 -35.14046 -33.55035 -32.51540 -31.44332 -28.56717 -27.51509 -27.29022 -26.76638 -25.61190 -25.24493 -23.77547 -22.57135 -21.85498 -20.69166 -20.25455 -19.35175 -18.87322 -17.07436 -16.56528 -16.36832 -16.08910 -15.75170 -15.72934 -15.32507 -14.80089 -14.47288 -14.36046 -13.94914 -13.71835 -13.62752 -13.23984 -13.11505 -12.66715 -12.49065 -12.19240 -12.08084 -11.87361 -11.79788 -11.57892 -11.33013 -11.23642 -11.16885 -11.11048 -11.03330 -10.85021 -10.79116 -10.63050 -10.51352 -10.21371 -10.04837 -9.86513 -9.82763 -9.62393 -9.40594 -9.26472 -8.72309 -8.55324 -7.43933 -6.17491 -4.23790 2.40928 2.78439 3.23463 3.30340 3.37560 3.52293 3.55638 4.00550 4.25829 4.34747 4.53032 4.61403 4.65262 4.76859 4.86502 4.99588 5.10987 5.16574 5.21981 5.30857 5.31943 5.39072 5.43088 5.51114 5.54220 5.55460 5.74179 5.75593 5.77519 5.82921 5.86961 5.89505 5.98887 5.99708 6.03280 6.08830 6.16343 6.24688 6.36446 6.37900 6.43576 6.47905 6.64227 6.67690 6.89865 6.98230 7.26048 7.27645 7.56121 7.78953 8.02734 8.14619 8.85287 9.43514 9.48215 10.89046 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009582 B = 0.005211 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.497021 B = 5372.263378 C = 6602.406389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.029 4.029 3 C 0.152 3.848 4 N -0.288 5.288 5 N -0.336 5.336 6 C 0.414 3.586 7 N -0.464 5.464 8 C 0.195 3.805 9 C -0.549 4.549 10 H 0.068 0.932 11 C 0.071 3.929 12 N -0.890 5.890 13 Si 0.888 3.112 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.271 1.271 17 C 0.108 3.892 18 C -0.133 4.133 19 C -0.168 4.168 20 C -0.187 4.187 21 N -0.470 5.470 22 C 0.119 3.881 23 C -0.138 4.138 24 C -0.120 4.120 25 C 0.041 3.959 26 O -0.378 6.378 27 C 0.049 3.951 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.056 0.944 35 H 0.263 0.737 36 H 0.065 0.935 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.096 0.904 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.084 -10.544 3.265 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.069 4.069 3 C -0.116 4.116 4 N -0.127 5.127 5 N -0.180 5.180 6 C 0.058 3.942 7 N -0.187 5.187 8 C 0.071 3.929 9 C -0.588 4.588 10 H 0.086 0.914 11 C -0.132 4.132 12 N -0.529 5.529 13 Si 0.716 3.284 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.196 1.196 17 C -0.019 4.019 18 C -0.152 4.152 19 C -0.205 4.205 20 C -0.225 4.225 21 N -0.165 5.165 22 C -0.005 4.005 23 C -0.139 4.139 24 C -0.177 4.177 25 C -0.036 4.036 26 O -0.296 6.296 27 C -0.029 4.029 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.098 0.902 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.099 0.901 49 H 0.108 0.892 50 H 0.115 0.885 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.593 -10.352 2.459 13.072 hybrid contribution -1.695 0.533 0.186 1.786 sum 5.899 -9.819 2.645 11.756 Atomic orbital electron populations 1.21759 0.94047 1.01805 1.03034 1.19893 0.96326 0.87160 1.03510 1.24359 1.06963 0.97392 0.82842 1.73821 1.15189 0.99388 1.24296 1.74644 1.23351 1.12245 1.07737 1.22480 0.96064 0.86802 0.88824 1.59381 1.24480 1.05825 1.29043 1.19942 0.84316 0.94143 0.94522 1.21746 1.08321 1.34581 0.94128 0.91397 1.24860 0.97554 0.95494 0.95295 1.69917 1.27547 1.39199 1.16196 0.86631 0.81107 0.78208 0.82457 1.20748 1.21084 1.19588 1.21421 0.95382 0.91946 0.93182 1.22113 1.01760 0.90824 1.00493 1.22973 0.97424 0.97385 1.02768 1.22942 0.93960 1.05230 1.00332 1.45863 1.52159 1.11132 1.07310 1.21916 0.96669 1.02354 0.79532 1.24073 0.97210 0.96368 0.96267 1.21501 0.94552 0.99269 1.02402 1.24196 0.99473 0.93915 0.86026 1.89667 1.65350 1.50710 1.23888 1.24029 0.97057 0.86572 0.95214 0.91711 0.91864 0.92678 0.88863 0.90831 0.95802 0.92640 0.92740 0.91618 0.91272 0.87865 0.88424 0.89462 0.89468 0.89233 0.87481 0.89265 0.90167 0.92411 0.92048 0.90125 0.89166 0.88534 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.89 37.16 0.37 -1.34 16 2 C -0.03 -0.35 6.11 -27.88 -0.17 -0.52 16 3 C 0.15 2.58 7.32 -154.02 -1.13 1.46 16 4 N -0.29 -5.98 12.18 32.99 0.40 -5.58 16 5 N -0.34 -7.52 11.00 30.32 0.33 -7.18 16 6 C 0.41 8.36 4.17 -318.87 -1.33 7.03 16 7 N -0.46 -9.12 3.92 -175.87 -0.69 -9.80 16 8 C 0.19 4.49 4.87 -4.98 -0.02 4.47 16 9 C -0.55 -14.45 7.53 -34.44 -0.26 -14.71 16 10 H 0.07 1.91 6.42 -52.49 -0.34 1.57 16 11 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 12 N -0.89 -24.62 13.29 55.43 0.74 -23.89 16 13 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 14 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 17 C 0.11 2.07 4.57 -3.82 -0.02 2.05 16 18 C -0.13 -2.20 5.05 -90.62 -0.46 -2.66 16 19 C -0.17 -2.75 10.18 -26.69 -0.27 -3.03 16 20 C -0.19 -2.64 10.25 -26.69 -0.27 -2.92 16 21 N -0.47 -8.01 2.38 -114.08 -0.27 -8.29 16 22 C 0.12 1.62 5.43 -4.04 -0.02 1.60 16 23 C -0.14 -1.62 1.23 -153.42 -0.19 -1.81 16 24 C -0.12 -1.58 7.97 37.16 0.30 -1.28 16 25 C 0.04 0.44 7.78 37.61 0.29 0.73 16 26 O -0.38 -4.63 12.37 -35.23 -0.44 -5.07 16 27 C 0.05 0.50 8.36 37.61 0.31 0.82 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.02 8.14 -51.92 -0.42 0.59 16 32 H 0.07 0.70 5.44 -51.93 -0.28 0.42 16 33 H 0.02 0.58 6.21 -51.93 -0.32 0.26 16 34 H 0.06 1.36 7.41 -51.93 -0.38 0.98 16 35 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.07 1.24 7.82 -51.93 -0.41 0.83 16 37 H 0.07 1.53 6.20 -51.93 -0.32 1.21 16 38 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 39 H 0.10 1.77 8.03 -51.93 -0.42 1.35 16 40 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.11 1.64 6.15 -51.93 -0.32 1.32 16 44 H 0.09 1.02 7.52 -51.93 -0.39 0.63 16 45 H 0.08 1.12 7.77 -51.93 -0.40 0.72 16 46 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 47 H 0.06 0.95 6.71 -51.93 -0.35 0.60 16 48 H 0.08 0.73 6.29 -51.93 -0.33 0.40 16 49 H 0.09 0.97 8.10 -51.93 -0.42 0.55 16 50 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 51 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 399.98 15.07 6.03 6.03 Total: -1.00 -30.69 399.98 -10.34 -41.04 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: -8.46 Total: 4.46 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.97 Total: -8.27 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: 0.51 Total: -54.74 kcal Atomic # 8 Polarization: -4.63 SS G_CDS: -0.44 Total: -5.07 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.69 -10.34 -41.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001513821311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.712 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds