Wall clock time and date at job start Tue Mar 31 2020 19:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.47164 * 2 1 4 4 N 1.30289 * 126.34609 * 270.04647 * 3 2 1 5 5 N 1.28531 * 110.05445 * 179.97438 * 4 3 2 6 6 C 1.31225 * 109.85705 * 359.74282 * 5 4 3 7 7 N 1.38577 * 126.47372 * 180.25991 * 6 5 4 8 8 C 1.46901 * 110.99885 * 106.87181 * 7 6 5 9 9 C 1.50698 * 109.47591 * 298.61886 * 8 7 6 10 10 H 1.08000 * 119.99530 * 5.01550 * 9 8 7 11 11 C 1.37878 * 120.00015 * 185.01058 * 9 8 7 12 12 N 1.31510 * 120.00303 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99820 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47006 * 90.00212 * 13 11 9 15 15 H 1.48495 * 109.46842 * 210.00183 * 13 11 9 16 16 H 1.48501 * 109.47170 * 330.00213 * 13 11 9 17 17 C 1.46901 * 110.99857 * 342.92204 * 7 6 5 18 18 C 1.53003 * 109.47013 * 195.39162 * 17 7 6 19 19 C 1.52999 * 117.49979 * 243.43259 * 18 17 7 20 20 C 1.52998 * 117.50143 * 174.76924 * 18 17 7 21 21 N 1.36453 * 107.05116 * 0.40086 * 6 5 4 22 22 C 1.46495 * 127.13266 * 179.87542 * 21 6 5 23 23 C 1.53006 * 109.47343 * 272.44760 * 22 21 6 24 24 C 1.53002 * 112.99610 * 48.17265 * 23 22 21 25 25 C 1.54040 * 113.81395 * 276.18959 * 23 22 21 26 26 O 1.44172 * 85.51382 * 223.19126 * 25 23 22 27 27 C 1.44179 * 93.34365 * 24.19807 * 26 25 23 28 28 H 1.09002 * 109.47232 * 60.00176 * 1 2 3 29 29 H 1.08999 * 109.46954 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47077 * 299.99782 * 1 2 3 31 31 H 1.09009 * 109.46867 * 240.00325 * 2 1 3 32 32 H 1.08994 * 109.47419 * 120.00445 * 2 1 3 33 33 H 1.08999 * 109.47243 * 58.62302 * 8 7 6 34 34 H 1.09005 * 109.47241 * 178.62039 * 8 7 6 35 35 H 0.96995 * 120.00518 * 179.97438 * 12 11 9 36 36 H 1.09001 * 109.47501 * 315.39172 * 17 7 6 37 37 H 1.09006 * 109.47123 * 75.39338 * 17 7 6 38 38 H 1.09005 * 115.55077 * 29.10092 * 18 17 7 39 39 H 1.08995 * 117.50154 * 359.97438 * 19 18 17 40 40 H 1.09000 * 117.49583 * 145.02227 * 19 18 17 41 41 H 1.09003 * 117.50052 * 214.98230 * 20 18 17 42 42 H 1.09006 * 117.49548 * 359.97438 * 20 18 17 43 43 H 1.09004 * 109.47647 * 32.44958 * 22 21 6 44 44 H 1.09006 * 109.47019 * 152.45215 * 22 21 6 45 45 H 1.09001 * 109.46458 * 60.00413 * 24 23 22 46 46 H 1.08997 * 109.46703 * 179.97438 * 24 23 22 47 47 H 1.08996 * 109.47287 * 300.00724 * 24 23 22 48 48 H 1.08994 * 113.86526 * 337.34301 * 25 23 22 49 49 H 1.09006 * 113.85930 * 109.04904 * 25 23 22 50 50 H 1.09001 * 113.86539 * 221.66245 * 27 26 25 51 51 H 1.08994 * 113.86662 * 89.94893 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2890 2.1491 -1.0494 5 7 2.7000 3.3123 -0.6888 6 6 2.7226 3.3909 0.6209 7 7 3.1039 4.4900 1.3737 8 6 1.9374 5.1368 1.9893 9 6 1.0060 5.6252 0.9101 10 1 1.2142 5.4001 -0.1255 11 6 -0.1121 6.3594 1.2447 12 7 -0.3655 6.6339 2.5056 13 14 -1.2671 6.9642 -0.0931 14 1 -2.3167 5.9430 -0.3398 15 1 -1.9039 8.2340 0.3396 16 1 -0.4989 7.1963 -1.3426 17 6 3.8676 5.4458 0.5605 18 6 4.5902 6.4336 1.4787 19 6 4.1944 7.9083 1.3810 20 6 5.5415 7.4386 0.8262 21 7 2.3027 2.1848 1.1014 22 6 2.1643 1.7920 2.5059 23 6 3.4967 1.2379 3.0143 24 6 4.6880 2.1326 2.6661 25 6 3.7168 -0.2511 2.6865 26 8 4.2039 -0.3602 4.0390 27 6 3.4632 0.7923 4.4884 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.4157 4.4188 2.6220 34 1 2.2674 5.9815 2.5941 35 1 -1.1518 7.1506 2.7410 36 1 4.5995 4.9073 -0.0416 37 1 3.1876 5.9899 -0.0951 38 1 4.8613 6.0494 2.4621 39 1 3.4195 8.1748 0.6623 40 1 4.2055 8.4942 2.3000 41 1 6.4383 7.7158 1.3804 42 1 5.6529 7.3958 -0.2573 43 1 1.8817 2.6611 3.1001 44 1 1.3944 1.0254 2.5946 45 1 4.5463 3.1165 3.1134 46 1 5.6035 1.6859 3.0540 47 1 4.7627 2.2332 1.5834 48 1 2.7951 -0.8033 2.5037 49 1 4.4792 -0.4275 1.9276 50 1 4.0244 1.4433 5.1586 51 1 2.4641 0.5586 4.8558 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001513821311.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:38 Heat of formation + Delta-G solvation = 80.850562 kcal Electronic energy + Delta-G solvation = -31510.480143 eV Core-core repulsion = 27641.084109 eV Total energy + Delta-G solvation = -3869.396034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.89071 -41.60870 -39.40299 -37.10239 -36.39116 -34.89727 -34.30751 -32.58603 -30.12189 -29.21336 -28.46653 -27.59000 -27.10351 -26.50429 -24.95417 -24.29522 -23.12787 -22.06388 -21.60889 -20.81994 -19.86293 -18.76421 -17.95361 -17.80057 -17.23034 -16.99482 -16.91278 -16.59401 -16.26489 -16.02466 -15.70213 -15.06623 -14.99452 -14.81190 -14.69216 -14.46907 -14.08986 -13.59947 -13.53476 -13.30049 -13.19396 -13.10711 -13.01252 -12.81780 -12.68408 -12.52847 -12.49703 -12.29969 -12.27922 -12.14514 -12.03863 -11.97415 -11.94025 -11.57092 -11.22089 -11.16637 -10.81610 -10.70628 -10.64510 -10.55211 -10.32439 -9.10091 -8.25805 -6.37607 0.98086 1.25946 1.29407 1.39735 1.46062 2.01603 2.31172 2.66462 2.88714 3.03781 3.07210 3.19057 3.47282 3.60995 3.70273 3.89419 3.98936 4.05437 4.12097 4.16720 4.22762 4.29552 4.33425 4.37081 4.42829 4.53747 4.58847 4.59943 4.65793 4.79327 4.83235 4.84008 4.85909 4.91404 4.96893 4.97409 5.06219 5.09777 5.13679 5.16347 5.21630 5.22780 5.27319 5.31630 5.34098 5.34386 5.41772 5.66311 5.77138 5.92760 6.04962 6.53842 6.76248 7.31422 7.96806 8.78432 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009582 B = 0.005211 C = 0.004240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2921.497021 B = 5372.263378 C = 6602.406389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.028 4.028 3 C 0.172 3.828 4 N -0.333 5.333 5 N -0.375 5.375 6 C 0.397 3.603 7 N -0.446 5.446 8 C 0.216 3.784 9 C -0.551 4.551 10 H 0.044 0.956 11 C 0.033 3.967 12 N -0.910 5.910 13 Si 0.935 3.065 14 H -0.281 1.281 15 H -0.272 1.272 16 H -0.281 1.281 17 C 0.117 3.883 18 C -0.146 4.146 19 C -0.181 4.181 20 C -0.154 4.154 21 N -0.466 5.466 22 C 0.115 3.885 23 C -0.140 4.140 24 C -0.111 4.111 25 C 0.046 3.954 26 O -0.394 6.394 27 C 0.056 3.944 28 H 0.039 0.961 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.015 0.985 34 H 0.041 0.959 35 H 0.266 0.734 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.120 0.880 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.033 0.967 48 H 0.106 0.894 49 H 0.088 0.912 50 H 0.102 0.898 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -12.524 4.474 15.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.068 4.068 3 C -0.097 4.097 4 N -0.172 5.172 5 N -0.218 5.218 6 C 0.039 3.961 7 N -0.169 5.169 8 C 0.091 3.909 9 C -0.590 4.590 10 H 0.062 0.938 11 C -0.168 4.168 12 N -0.549 5.549 13 Si 0.762 3.238 14 H -0.207 1.207 15 H -0.197 1.197 16 H -0.206 1.206 17 C -0.010 4.010 18 C -0.164 4.164 19 C -0.218 4.218 20 C -0.192 4.192 21 N -0.160 5.160 22 C -0.008 4.008 23 C -0.141 4.141 24 C -0.168 4.168 25 C -0.030 4.030 26 O -0.314 6.314 27 C -0.021 4.021 28 H 0.058 0.942 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.126 0.874 32 H 0.125 0.875 33 H 0.033 0.967 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.129 0.871 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.136 0.864 42 H 0.111 0.889 43 H 0.106 0.894 44 H 0.138 0.862 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.052 0.948 48 H 0.124 0.876 49 H 0.107 0.893 50 H 0.120 0.880 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.773 -12.342 3.672 15.041 hybrid contribution -1.748 1.076 -0.227 2.065 sum 6.025 -11.266 3.445 13.232 Atomic orbital electron populations 1.21744 0.93373 1.03750 1.01395 1.20221 0.96660 0.84024 1.05882 1.25383 1.03794 0.98683 0.81856 1.73733 1.17627 0.99642 1.26166 1.74513 1.24468 1.13611 1.09216 1.22512 0.97182 0.87760 0.88663 1.59370 1.22863 1.05615 1.29052 1.19531 0.84685 0.93343 0.93378 1.21829 1.09008 1.34434 0.93740 0.93762 1.25393 0.98719 0.95853 0.96809 1.69967 1.28097 1.39820 1.17051 0.85912 0.79498 0.78240 0.80187 1.20714 1.19717 1.20636 1.21297 0.94536 0.91932 0.93263 1.22068 1.03293 0.90365 1.00723 1.22928 0.98597 0.97284 1.03022 1.23033 0.93705 1.01658 1.00780 1.46093 1.51055 1.10079 1.08782 1.22196 0.98797 1.02484 0.77277 1.24070 0.95265 0.96839 0.97920 1.21356 0.95882 0.99192 1.00360 1.24306 1.00470 0.92651 0.85578 1.89663 1.66032 1.51177 1.24479 1.24164 0.98197 0.85810 0.93935 0.94181 0.88108 0.93508 0.87370 0.87535 0.96701 0.94107 0.92462 0.91761 0.94984 0.87074 0.91037 0.88354 0.86404 0.88916 0.89350 0.86245 0.91472 0.91501 0.94759 0.87591 0.89345 0.87955 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.89 71.98 0.71 -2.22 16 2 C -0.03 -0.60 6.11 29.85 0.18 -0.42 16 3 C 0.17 5.72 7.32 137.64 1.01 6.73 16 4 N -0.33 -14.17 12.18 -49.54 -0.60 -14.78 16 5 N -0.37 -17.51 11.00 -58.00 -0.64 -18.15 16 6 C 0.40 16.55 4.17 260.11 1.08 17.63 16 7 N -0.45 -18.27 3.92 -710.33 -2.78 -21.05 16 8 C 0.22 10.32 4.87 85.56 0.42 10.74 16 9 C -0.55 -30.10 7.53 25.60 0.19 -29.91 16 10 H 0.04 2.62 6.42 -2.91 -0.02 2.60 16 11 C 0.03 1.83 5.46 84.66 0.46 2.29 16 12 N -0.91 -50.88 13.29 21.45 0.28 -50.59 16 13 Si 0.93 45.09 29.54 68.60 2.03 47.12 16 14 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 15 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 17 C 0.12 4.72 4.57 86.30 0.39 5.11 16 18 C -0.15 -4.89 5.05 -10.79 -0.05 -4.94 16 19 C -0.18 -6.01 10.18 30.62 0.31 -5.70 16 20 C -0.15 -4.19 10.25 30.62 0.31 -3.88 16 21 N -0.47 -15.81 2.38 -514.84 -1.23 -17.04 16 22 C 0.11 2.96 5.43 86.38 0.47 3.43 16 23 C -0.14 -3.02 1.23 -51.48 -0.06 -3.08 16 24 C -0.11 -2.85 7.97 71.98 0.57 -2.28 16 25 C 0.05 0.85 7.78 72.28 0.56 1.41 16 26 O -0.39 -8.47 12.37 -148.98 -1.84 -10.31 16 27 C 0.06 0.99 8.36 72.27 0.60 1.60 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 2.03 8.14 -2.38 -0.02 2.01 16 32 H 0.11 1.55 5.44 -2.39 -0.01 1.53 16 33 H 0.02 0.75 6.21 -2.39 -0.01 0.73 16 34 H 0.04 2.08 7.41 -2.38 -0.02 2.06 16 35 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 36 H 0.06 2.56 7.82 -2.39 -0.02 2.54 16 37 H 0.03 1.52 6.20 -2.38 -0.01 1.50 16 38 H 0.11 3.56 8.14 -2.38 -0.02 3.54 16 39 H 0.07 2.73 8.03 -2.39 -0.02 2.71 16 40 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.12 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.09 2.48 8.14 -2.38 -0.02 2.46 16 43 H 0.09 2.66 6.15 -2.38 -0.01 2.65 16 44 H 0.12 2.33 7.52 -2.38 -0.02 2.31 16 45 H 0.07 1.88 7.77 -2.39 -0.02 1.86 16 46 H 0.07 1.57 8.09 -2.39 -0.02 1.55 16 47 H 0.03 1.06 6.71 -2.39 -0.02 1.04 16 48 H 0.11 1.40 6.29 -2.39 -0.02 1.38 16 49 H 0.09 1.67 8.10 -2.38 -0.02 1.65 16 50 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 51 H 0.11 1.43 8.10 -2.39 -0.02 1.41 16 Total: -1.00 -69.89 399.98 3.31 -66.58 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: 0.92 Total: 21.71 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: 7.17 Total: -3.49 kcal Atomic # 7 Polarization: -116.64 SS G_CDS: -4.96 Total: -121.60 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -1.84 Total: -10.31 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.89 3.31 -66.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001513821311.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.432 kcal (2) G-P(sol) polarization free energy of solvation -69.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds