Wall clock time and date at job start Tue Mar 31 2020 20:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47220 * 312.78584 * 3 2 1 5 5 C 1.53000 * 109.47213 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47344 * 180.02562 * 5 4 3 7 7 C 1.36739 * 127.13688 * 92.86054 * 6 5 4 8 8 C 1.50698 * 126.34687 * 359.97438 * 7 6 5 9 9 C 1.52995 * 109.47264 * 239.71269 * 8 7 6 10 10 C 1.52999 * 109.46925 * 119.71457 * 8 7 6 11 11 N 1.30296 * 107.30156 * 179.73324 * 7 6 5 12 12 N 1.28521 * 110.05763 * 0.26153 * 11 7 6 13 13 C 1.31216 * 109.86017 * 0.02562 * 12 11 7 14 14 N 1.38589 * 126.47405 * 180.02562 * 13 12 11 15 15 C 1.46898 * 111.00183 * 105.72851 * 14 13 12 16 16 C 1.50707 * 109.46605 * 303.19516 * 15 14 13 17 17 H 1.07997 * 120.00246 * 4.69643 * 16 15 14 18 18 C 1.37881 * 119.99337 * 184.70224 * 16 15 14 19 19 N 1.31505 * 120.00492 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99485 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47184 * 59.99976 * 20 18 16 22 22 H 1.48504 * 109.46834 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47129 * 299.99982 * 20 18 16 24 24 C 1.46899 * 110.99800 * 341.76690 * 14 13 12 25 25 C 1.53000 * 109.46989 * 195.83426 * 24 14 13 26 26 O 1.42899 * 109.46959 * 65.34436 * 25 24 14 27 27 C 1.42902 * 113.99918 * 180.02562 * 26 25 24 28 28 H 4.44650 * 5.63433 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.46926 * 192.78943 * 3 2 1 30 30 H 1.08997 * 109.47285 * 72.79188 * 3 2 1 31 31 H 1.08996 * 109.47125 * 59.99961 * 4 3 2 32 32 H 1.09004 * 109.47132 * 299.99904 * 4 3 2 33 33 H 1.09004 * 109.47456 * 59.99474 * 5 4 3 34 34 H 1.09007 * 109.46918 * 300.00327 * 5 4 3 35 35 H 1.08998 * 109.47020 * 359.71365 * 8 7 6 36 36 H 1.08995 * 109.47528 * 179.97438 * 9 8 7 37 37 H 1.09007 * 109.47152 * 59.99912 * 9 8 7 38 38 H 1.09007 * 109.47418 * 300.00535 * 9 8 7 39 39 H 1.09003 * 109.47196 * 179.97438 * 10 8 7 40 40 H 1.08997 * 109.47389 * 299.99635 * 10 8 7 41 41 H 1.08998 * 109.47348 * 60.00108 * 10 8 7 42 42 H 1.08996 * 109.47509 * 63.19146 * 15 14 13 43 43 H 1.08999 * 109.46829 * 183.19822 * 15 14 13 44 44 H 0.97002 * 120.00176 * 180.02562 * 19 18 16 45 45 H 1.08990 * 109.47683 * 315.84037 * 24 14 13 46 46 H 1.09004 * 109.46421 * 75.83935 * 24 14 13 47 47 H 1.09001 * 109.46782 * 185.34070 * 25 24 14 48 48 H 1.09001 * 109.47314 * 305.34110 * 25 24 14 49 49 H 1.08999 * 109.47247 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.46386 * 299.99579 * 27 26 25 51 51 H 1.08999 * 109.47222 * 59.99392 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.9789 1.0586 5 6 4.6864 -0.9778 1.0591 6 7 5.1752 -1.9162 2.0723 7 6 5.5028 -3.2312 1.8899 8 6 5.4284 -3.9989 0.5953 9 6 4.4734 -5.1830 0.7588 10 6 6.8212 -4.5141 0.2272 11 7 5.8960 -3.6959 3.0419 12 7 5.8345 -2.7726 3.9339 13 6 5.3945 -1.6603 3.3946 14 7 5.1970 -0.4519 4.0436 15 6 6.2463 0.5135 3.6898 16 6 7.5965 -0.0692 4.0192 17 1 7.6735 -1.0853 4.3771 18 6 8.7336 0.6950 3.8637 19 7 8.6398 1.9324 3.4285 20 14 10.4072 -0.0270 4.2727 21 1 10.6551 -1.2166 3.4192 22 1 11.4598 0.9900 4.0212 23 1 10.4373 -0.4283 5.7021 24 6 5.1248 -0.6414 5.4985 25 6 4.5245 0.6079 6.1464 26 8 3.1677 0.7583 5.7239 27 6 2.5109 1.9019 6.2744 28 1 -1.0499 -0.0001 0.0004 29 1 3.0088 1.0030 0.2275 30 1 3.0095 -0.3032 -0.9816 31 1 2.7936 -1.9812 0.8312 32 1 2.7930 -0.6749 2.0403 33 1 5.0490 0.0247 1.2867 34 1 5.0503 -1.2814 0.0774 35 1 5.0626 -3.3436 -0.1952 36 1 4.4192 -5.7381 -0.1777 37 1 3.4811 -4.8160 1.0211 38 1 4.8391 -5.8384 1.5494 39 1 6.7673 -5.0698 -0.7090 40 1 7.5016 -3.6705 0.1107 41 1 7.1869 -5.1694 1.0177 42 1 6.1950 0.7312 2.6231 43 1 6.0995 1.4333 4.2560 44 1 9.4398 2.4699 3.3188 45 1 4.4970 -1.5039 5.7219 46 1 6.1269 -0.8095 5.8931 47 1 4.5581 0.5064 7.2312 48 1 5.0981 1.4845 5.8456 49 1 1.4860 1.9447 5.9059 50 1 2.5028 1.8276 7.3619 51 1 3.0429 2.8052 5.9759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001539089124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:09 Heat of formation + Delta-G solvation = 79.275451 kcal Electronic energy + Delta-G solvation = -30508.899442 eV Core-core repulsion = 26639.435106 eV Total energy + Delta-G solvation = -3869.464336 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.26931 -37.93681 -36.47655 -36.38741 -35.12952 -33.84071 -32.61816 -31.10800 -29.63360 -28.39897 -27.05458 -26.86364 -26.37483 -25.66811 -23.56140 -22.62295 -22.43512 -21.45326 -19.75520 -19.14597 -18.19669 -16.93819 -16.37428 -16.10612 -15.93911 -15.62683 -15.29754 -14.91186 -14.77294 -14.51553 -14.35638 -14.04871 -13.95094 -13.50047 -13.13970 -13.00295 -12.72639 -12.68602 -12.17937 -12.07626 -11.87173 -11.72994 -11.55393 -11.41754 -11.20727 -11.11667 -11.10077 -10.98600 -10.85423 -10.75283 -10.54657 -10.39644 -10.31738 -10.24994 -10.13500 -9.92593 -9.55926 -9.38534 -9.21339 -8.65425 -8.54599 -7.35218 -6.17172 -4.24691 2.50664 2.69831 2.79803 2.98138 3.27293 3.30157 3.37289 3.65355 4.23190 4.27885 4.35311 4.60682 4.63393 4.80630 4.91670 5.08947 5.15971 5.19922 5.24550 5.28349 5.40143 5.46173 5.50290 5.57386 5.67888 5.71108 5.73010 5.78773 5.79360 5.86174 5.91837 5.94392 5.96107 5.96733 5.98561 6.06107 6.14528 6.22448 6.33806 6.37552 6.57217 6.64406 6.76944 7.01578 7.25752 7.33217 7.51254 7.56923 7.69698 7.79646 8.01585 8.21000 8.85916 9.43578 9.57302 10.88910 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007149 B = 0.005349 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3915.853225 B = 5233.033322 C = 7264.729270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.177 4.177 3 C -0.010 4.010 4 C -0.126 4.126 5 C 0.114 3.886 6 N -0.473 5.473 7 C 0.156 3.844 8 C 0.003 3.997 9 C -0.138 4.138 10 C -0.141 4.141 11 N -0.285 5.285 12 N -0.337 5.337 13 C 0.415 3.585 14 N -0.459 5.459 15 C 0.191 3.809 16 C -0.555 4.555 17 H 0.071 0.929 18 C 0.071 3.929 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.081 3.919 25 C 0.067 3.933 26 O -0.380 6.380 27 C 0.032 3.968 28 H 0.215 0.785 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.052 0.948 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.051 0.949 44 H 0.264 0.736 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.049 0.951 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.033 0.967 51 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.346 -3.590 -6.410 14.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.177 4.177 3 C -0.047 4.047 4 C -0.164 4.164 5 C -0.010 4.010 6 N -0.167 5.167 7 C -0.112 4.112 8 C -0.018 4.018 9 C -0.196 4.196 10 C -0.199 4.199 11 N -0.124 5.124 12 N -0.181 5.181 13 C 0.058 3.942 14 N -0.183 5.183 15 C 0.067 3.933 16 C -0.594 4.594 17 H 0.089 0.911 18 C -0.133 4.133 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.046 4.046 25 C -0.010 4.010 26 O -0.299 6.299 27 C -0.065 4.065 28 H 0.232 0.768 29 H 0.112 0.888 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.096 0.904 50 H 0.052 0.948 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -12.239 -4.279 -5.661 14.147 hybrid contribution 1.171 0.865 -0.334 1.493 sum -11.068 -3.414 -5.995 13.042 Atomic orbital electron populations 1.24842 0.95926 1.01378 1.01291 1.23052 0.94468 1.00093 1.00104 1.18633 0.84907 1.01246 0.99890 1.21861 0.94221 0.99729 1.00637 1.21799 0.94147 0.94455 0.90594 1.45932 1.51524 1.10176 1.09065 1.24317 1.06018 0.82362 0.98476 1.19391 0.97674 0.95385 0.89346 1.21775 0.98487 0.97172 1.02159 1.21794 0.95037 1.01570 1.01488 1.73744 1.17688 1.24217 0.96748 1.74611 1.21022 0.98182 1.24304 1.22452 0.95907 0.94039 0.81769 1.59270 1.46970 1.03940 1.08130 1.19985 0.85963 0.90184 0.97127 1.21821 0.91706 1.00126 1.45751 0.91140 1.24890 0.99246 0.94586 0.94528 1.69917 1.29585 1.07882 1.45553 0.86642 0.83261 0.78805 0.79381 1.20201 1.21224 1.19906 1.21883 1.00974 0.96316 0.85476 1.22667 0.82428 0.99090 0.96779 1.87967 1.25523 1.45372 1.70993 1.22649 0.97552 0.89072 0.97183 0.76800 0.88827 0.89449 0.91403 0.89739 0.87806 0.89484 0.90346 0.92094 0.92867 0.91375 0.92119 0.92501 0.91371 0.95266 0.93104 0.92626 0.90887 0.90143 0.93312 0.92157 0.90408 0.94846 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.34 19.25 29.55 0.57 -1.77 16 2 C -0.18 -2.11 13.34 -37.12 -0.50 -2.61 16 3 C -0.01 -0.10 5.70 -29.52 -0.17 -0.27 16 4 C -0.13 -1.61 5.49 -26.73 -0.15 -1.75 16 5 C 0.11 1.65 5.94 -4.04 -0.02 1.63 16 6 N -0.47 -8.78 2.81 -114.08 -0.32 -9.10 16 7 C 0.16 2.83 6.58 -154.02 -1.01 1.82 16 8 C 0.00 0.04 3.28 -91.78 -0.30 -0.26 16 9 C -0.14 -1.59 9.17 37.16 0.34 -1.25 16 10 C -0.14 -1.79 9.17 37.16 0.34 -1.45 16 11 N -0.28 -6.14 12.18 32.99 0.40 -5.74 16 12 N -0.34 -7.87 10.80 30.32 0.33 -7.54 16 13 C 0.41 9.01 5.67 -318.86 -1.81 7.20 16 14 N -0.46 -9.80 4.65 -175.88 -0.82 -10.62 16 15 C 0.19 4.59 4.96 -4.97 -0.02 4.57 16 16 C -0.56 -14.88 7.53 -34.44 -0.26 -15.14 16 17 H 0.07 2.00 6.39 -52.49 -0.34 1.67 16 18 C 0.07 1.93 5.46 -17.82 -0.10 1.83 16 19 N -0.89 -24.87 13.29 55.43 0.74 -24.14 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.08 1.63 4.72 -3.82 -0.02 1.61 16 25 C 0.07 1.17 6.09 37.16 0.23 1.40 16 26 O -0.38 -6.58 10.65 -35.23 -0.38 -6.95 16 27 C 0.03 0.42 11.01 101.05 1.11 1.54 16 28 H 0.22 1.55 7.80 -54.09 -0.42 1.13 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.10 1.67 6.21 -51.93 -0.32 1.35 16 34 H 0.09 1.03 7.11 -51.93 -0.37 0.66 16 35 H 0.08 0.88 6.88 -51.93 -0.36 0.52 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.03 0.73 6.28 -51.93 -0.33 0.41 16 43 H 0.05 1.28 6.39 -51.93 -0.33 0.95 16 44 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.07 1.46 7.82 -51.93 -0.41 1.06 16 46 H 0.08 1.76 6.80 -51.93 -0.35 1.41 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 1.12 6.46 -51.93 -0.34 0.79 16 49 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 419.03 15.07 6.31 6.31 Total: -1.00 -32.52 419.03 -9.13 -41.65 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: -8.61 Total: 2.36 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: -1.77 Total: -2.91 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.33 Total: -57.14 kcal Atomic # 8 Polarization: -6.58 SS G_CDS: -0.38 Total: -6.95 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -32.52 -9.13 -41.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539089124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.925 kcal (2) G-P(sol) polarization free energy of solvation -32.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds