Wall clock time and date at job start Tue Mar 31 2020 20:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47220 * 312.78584 * 3 2 1 5 5 C 1.53000 * 109.47213 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47344 * 180.02562 * 5 4 3 7 7 C 1.36739 * 127.13688 * 92.86054 * 6 5 4 8 8 C 1.50698 * 126.34687 * 359.97438 * 7 6 5 9 9 C 1.52995 * 109.47264 * 239.71269 * 8 7 6 10 10 C 1.52999 * 109.46925 * 119.71457 * 8 7 6 11 11 N 1.30296 * 107.30156 * 179.73324 * 7 6 5 12 12 N 1.28521 * 110.05763 * 0.26153 * 11 7 6 13 13 C 1.31216 * 109.86017 * 0.02562 * 12 11 7 14 14 N 1.38589 * 126.47405 * 180.02562 * 13 12 11 15 15 C 1.46898 * 111.00183 * 105.72851 * 14 13 12 16 16 C 1.50707 * 109.46605 * 303.19516 * 15 14 13 17 17 H 1.07997 * 120.00246 * 4.69643 * 16 15 14 18 18 C 1.37881 * 119.99337 * 184.70224 * 16 15 14 19 19 N 1.31505 * 120.00492 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99485 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47184 * 59.99976 * 20 18 16 22 22 H 1.48504 * 109.46834 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47129 * 299.99982 * 20 18 16 24 24 C 1.46899 * 110.99800 * 341.76690 * 14 13 12 25 25 C 1.53000 * 109.46989 * 195.83426 * 24 14 13 26 26 O 1.42899 * 109.46959 * 65.34436 * 25 24 14 27 27 C 1.42902 * 113.99918 * 180.02562 * 26 25 24 28 28 H 4.44650 * 5.63433 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.46926 * 192.78943 * 3 2 1 30 30 H 1.08997 * 109.47285 * 72.79188 * 3 2 1 31 31 H 1.08996 * 109.47125 * 59.99961 * 4 3 2 32 32 H 1.09004 * 109.47132 * 299.99904 * 4 3 2 33 33 H 1.09004 * 109.47456 * 59.99474 * 5 4 3 34 34 H 1.09007 * 109.46918 * 300.00327 * 5 4 3 35 35 H 1.08998 * 109.47020 * 359.71365 * 8 7 6 36 36 H 1.08995 * 109.47528 * 179.97438 * 9 8 7 37 37 H 1.09007 * 109.47152 * 59.99912 * 9 8 7 38 38 H 1.09007 * 109.47418 * 300.00535 * 9 8 7 39 39 H 1.09003 * 109.47196 * 179.97438 * 10 8 7 40 40 H 1.08997 * 109.47389 * 299.99635 * 10 8 7 41 41 H 1.08998 * 109.47348 * 60.00108 * 10 8 7 42 42 H 1.08996 * 109.47509 * 63.19146 * 15 14 13 43 43 H 1.08999 * 109.46829 * 183.19822 * 15 14 13 44 44 H 0.97002 * 120.00176 * 180.02562 * 19 18 16 45 45 H 1.08990 * 109.47683 * 315.84037 * 24 14 13 46 46 H 1.09004 * 109.46421 * 75.83935 * 24 14 13 47 47 H 1.09001 * 109.46782 * 185.34070 * 25 24 14 48 48 H 1.09001 * 109.47314 * 305.34110 * 25 24 14 49 49 H 1.08999 * 109.47247 * 180.02562 * 27 26 25 50 50 H 1.09001 * 109.46386 * 299.99579 * 27 26 25 51 51 H 1.08999 * 109.47222 * 59.99392 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1564 -0.9789 1.0586 5 6 4.6864 -0.9778 1.0591 6 7 5.1752 -1.9162 2.0723 7 6 5.5028 -3.2312 1.8899 8 6 5.4284 -3.9989 0.5953 9 6 4.4734 -5.1830 0.7588 10 6 6.8212 -4.5141 0.2272 11 7 5.8960 -3.6959 3.0419 12 7 5.8345 -2.7726 3.9339 13 6 5.3945 -1.6603 3.3946 14 7 5.1970 -0.4519 4.0436 15 6 6.2463 0.5135 3.6898 16 6 7.5965 -0.0692 4.0192 17 1 7.6735 -1.0853 4.3771 18 6 8.7336 0.6950 3.8637 19 7 8.6398 1.9324 3.4285 20 14 10.4072 -0.0270 4.2727 21 1 10.6551 -1.2166 3.4192 22 1 11.4598 0.9900 4.0212 23 1 10.4373 -0.4283 5.7021 24 6 5.1248 -0.6414 5.4985 25 6 4.5245 0.6079 6.1464 26 8 3.1677 0.7583 5.7239 27 6 2.5109 1.9019 6.2744 28 1 -1.0499 -0.0001 0.0004 29 1 3.0088 1.0030 0.2275 30 1 3.0095 -0.3032 -0.9816 31 1 2.7936 -1.9812 0.8312 32 1 2.7930 -0.6749 2.0403 33 1 5.0490 0.0247 1.2867 34 1 5.0503 -1.2814 0.0774 35 1 5.0626 -3.3436 -0.1952 36 1 4.4192 -5.7381 -0.1777 37 1 3.4811 -4.8160 1.0211 38 1 4.8391 -5.8384 1.5494 39 1 6.7673 -5.0698 -0.7090 40 1 7.5016 -3.6705 0.1107 41 1 7.1869 -5.1694 1.0177 42 1 6.1950 0.7312 2.6231 43 1 6.0995 1.4333 4.2560 44 1 9.4398 2.4699 3.3188 45 1 4.4970 -1.5039 5.7219 46 1 6.1269 -0.8095 5.8931 47 1 4.5581 0.5064 7.2312 48 1 5.0981 1.4845 5.8456 49 1 1.4860 1.9447 5.9059 50 1 2.5028 1.8276 7.3619 51 1 3.0429 2.8052 5.9759 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001539089124.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:07 Heat of formation + Delta-G solvation = 61.355394 kcal Electronic energy + Delta-G solvation = -30509.676514 eV Core-core repulsion = 26639.435106 eV Total energy + Delta-G solvation = -3870.241408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.81845 -39.45148 -37.94075 -37.54391 -36.27708 -35.00076 -34.66758 -32.18213 -31.10646 -30.15248 -28.30620 -28.01588 -27.73087 -26.97780 -25.21743 -24.13811 -23.67583 -22.85532 -21.30923 -20.49971 -19.12427 -18.75945 -17.88194 -17.53899 -17.41897 -17.07135 -16.61253 -16.41257 -16.07229 -15.98612 -15.59667 -15.24871 -15.07459 -14.92195 -14.65954 -14.13680 -13.98965 -13.83570 -13.71711 -13.27710 -13.17572 -13.04852 -12.94699 -12.87711 -12.70866 -12.61381 -12.48082 -12.30397 -12.20018 -12.14940 -12.12745 -11.94157 -11.81995 -11.79415 -11.26422 -11.18900 -10.97378 -10.81384 -10.68106 -10.51999 -10.31528 -9.08060 -8.26361 -6.40372 0.99568 1.30653 1.31501 1.40690 1.45273 1.93646 1.95848 2.03549 2.31963 2.93566 3.02825 3.04474 3.38411 3.50824 3.65210 3.86881 4.07155 4.11567 4.17937 4.20466 4.22041 4.26600 4.32506 4.39061 4.47721 4.50508 4.58464 4.61007 4.62906 4.74010 4.79246 4.84177 4.86172 4.94667 4.97441 4.98619 5.02036 5.07653 5.16051 5.18980 5.20746 5.24061 5.28664 5.38043 5.45602 5.65298 5.74288 5.92480 6.01020 6.34338 6.52805 6.74363 6.74804 7.29790 7.97596 8.77552 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.007149 B = 0.005349 C = 0.003853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3915.853225 B = 5233.033322 C = 7264.729270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.215 4.215 3 C -0.004 4.004 4 C -0.109 4.109 5 C 0.108 3.892 6 N -0.474 5.474 7 C 0.174 3.826 8 C 0.000 4.000 9 C -0.131 4.131 10 C -0.137 4.137 11 N -0.325 5.325 12 N -0.371 5.371 13 C 0.391 3.609 14 N -0.450 5.450 15 C 0.211 3.789 16 C -0.560 4.560 17 H 0.050 0.950 18 C 0.032 3.968 19 N -0.912 5.912 20 Si 0.942 3.058 21 H -0.285 1.285 22 H -0.273 1.273 23 H -0.273 1.273 24 C 0.084 3.916 25 C 0.079 3.921 26 O -0.402 6.402 27 C 0.027 3.973 28 H 0.243 0.757 29 H 0.092 0.908 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.099 0.901 40 H 0.040 0.960 41 H 0.048 0.952 42 H 0.018 0.982 43 H 0.038 0.962 44 H 0.268 0.732 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.075 0.925 48 H 0.045 0.955 49 H 0.096 0.904 50 H 0.053 0.947 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.522 -3.937 -8.368 16.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.216 4.216 3 C -0.041 4.041 4 C -0.147 4.147 5 C -0.014 4.014 6 N -0.167 5.167 7 C -0.095 4.095 8 C -0.020 4.020 9 C -0.189 4.189 10 C -0.195 4.195 11 N -0.163 5.163 12 N -0.215 5.215 13 C 0.033 3.967 14 N -0.174 5.174 15 C 0.086 3.914 16 C -0.599 4.599 17 H 0.068 0.932 18 C -0.169 4.169 19 N -0.551 5.551 20 Si 0.768 3.232 21 H -0.211 1.211 22 H -0.197 1.197 23 H -0.198 1.198 24 C -0.043 4.043 25 C 0.002 3.998 26 O -0.321 6.321 27 C -0.069 4.069 28 H 0.260 0.740 29 H 0.110 0.890 30 H 0.133 0.867 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.141 0.859 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.118 0.882 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.036 0.964 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.064 0.936 49 H 0.114 0.886 50 H 0.071 0.929 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.429 -4.618 -7.620 16.116 hybrid contribution 1.442 0.925 0.232 1.729 sum -11.988 -3.693 -7.387 14.557 Atomic orbital electron populations 1.25677 0.96913 1.00001 1.00042 1.23491 0.95331 1.01399 1.01334 1.18609 0.84633 1.00521 1.00323 1.21665 0.92575 1.00670 0.99804 1.22089 0.95411 0.92901 0.90979 1.46245 1.50898 1.10946 1.08631 1.25387 1.02591 0.82192 0.99325 1.19783 0.98765 0.96081 0.87416 1.21742 0.97479 0.96271 1.03456 1.21780 0.94044 1.00944 1.02723 1.73662 1.20086 1.24607 0.97991 1.74483 1.21880 0.99152 1.25961 1.22554 0.97106 0.93751 0.83248 1.59272 1.45609 1.03742 1.08750 1.19608 0.85646 0.90174 0.95982 1.21896 0.93233 0.99246 1.45484 0.93165 1.25468 1.01872 0.94960 0.94589 1.69977 1.30422 1.08523 1.46158 0.85862 0.80402 0.78039 0.78889 1.21116 1.19745 1.19786 1.21833 0.99800 0.97724 0.84967 1.22477 0.82638 0.96875 0.97841 1.87919 1.25059 1.47252 1.71916 1.22880 0.98005 0.87615 0.98437 0.74023 0.88987 0.86707 0.90719 0.92965 0.89654 0.85927 0.87251 0.88457 0.93142 0.93208 0.88200 0.94111 0.93329 0.96396 0.94421 0.92310 0.91265 0.92574 0.90664 0.93640 0.88566 0.92877 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -4.07 19.25 74.32 1.43 -2.64 16 2 C -0.22 -4.79 13.34 31.13 0.42 -4.37 16 3 C 0.00 -0.08 5.70 28.79 0.16 0.09 16 4 C -0.11 -2.68 5.49 30.59 0.17 -2.51 16 5 C 0.11 3.07 5.94 86.38 0.51 3.58 16 6 N -0.47 -17.73 2.81 -514.84 -1.45 -19.18 16 7 C 0.17 6.27 6.58 137.64 0.91 7.17 16 8 C 0.00 0.01 3.28 -11.54 -0.04 -0.03 16 9 C -0.13 -2.69 9.17 71.98 0.66 -2.03 16 10 C -0.14 -3.18 9.17 71.98 0.66 -2.52 16 11 N -0.33 -14.41 12.18 -49.54 -0.60 -15.01 16 12 N -0.37 -18.09 10.80 -58.00 -0.63 -18.71 16 13 C 0.39 17.64 5.67 260.11 1.48 19.11 16 14 N -0.45 -20.07 4.65 -710.36 -3.31 -23.38 16 15 C 0.21 10.53 4.96 85.56 0.42 10.96 16 16 C -0.56 -31.00 7.53 25.60 0.19 -30.81 16 17 H 0.05 2.98 6.39 -2.91 -0.02 2.96 16 18 C 0.03 1.79 5.46 84.66 0.46 2.25 16 19 N -0.91 -51.38 13.29 21.45 0.28 -51.09 16 20 Si 0.94 45.05 29.54 68.60 2.03 47.07 16 21 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 22 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 24 C 0.08 3.56 4.72 86.30 0.41 3.97 16 25 C 0.08 2.80 6.09 71.98 0.44 3.24 16 26 O -0.40 -13.92 10.65 -148.98 -1.59 -15.51 16 27 C 0.03 0.67 11.01 113.37 1.25 1.92 16 28 H 0.24 2.81 7.80 -4.42 -0.03 2.78 16 29 H 0.09 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.09 2.78 6.21 -2.38 -0.01 2.77 16 34 H 0.12 2.57 7.11 -2.38 -0.02 2.55 16 35 H 0.11 1.99 6.88 -2.39 -0.02 1.97 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.02 0.94 6.28 -2.39 -0.02 0.92 16 43 H 0.04 1.98 6.39 -2.39 -0.02 1.96 16 44 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 45 H 0.07 2.93 7.82 -2.39 -0.02 2.91 16 46 H 0.06 2.61 6.80 -2.38 -0.02 2.60 16 47 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.05 1.75 6.46 -2.39 -0.02 1.73 16 49 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 50 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -73.58 419.03 5.17 -68.41 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: 0.90 Total: 20.04 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 9.53 Total: 7.36 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -5.70 Total: -127.37 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: -1.59 Total: -15.51 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -73.58 5.17 -68.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001539089124.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.769 kcal (2) G-P(sol) polarization free energy of solvation -73.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds