Wall clock time and date at job start Tue Mar 31 2020 18:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47067 * 2 1 4 4 N 1.30297 * 126.34518 * 81.44619 * 3 2 1 5 5 N 1.28528 * 110.05051 * 179.97438 * 4 3 2 6 6 C 1.31211 * 109.86563 * 359.97438 * 5 4 3 7 7 N 1.38580 * 126.47791 * 180.02562 * 6 5 4 8 8 C 1.46842 * 111.00048 * 106.83628 * 7 6 5 9 9 C 1.53040 * 109.52340 * 174.16060 * 8 7 6 10 10 C 1.53119 * 109.27618 * 59.18096 * 9 8 7 11 11 C 1.50706 * 109.52472 * 182.44202 * 10 9 8 12 12 H 1.07996 * 120.00252 * 119.67583 * 11 10 9 13 13 C 1.37882 * 119.99565 * 299.68157 * 11 10 9 14 14 N 1.31513 * 119.99736 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00036 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47065 * 90.00312 * 15 13 11 17 17 H 1.48497 * 109.46996 * 209.99816 * 15 13 11 18 18 H 1.48494 * 109.47065 * 329.99977 * 15 13 11 19 19 C 1.53119 * 109.16097 * 302.34227 * 10 9 8 20 20 C 1.46843 * 110.99939 * 342.62562 * 7 6 5 21 21 N 1.36452 * 107.04987 * 359.76053 * 6 5 4 22 22 C 1.46508 * 127.13601 * 180.24253 * 21 6 5 23 23 C 1.52995 * 109.46971 * 276.18970 * 22 21 6 24 24 O 1.42905 * 112.84779 * 55.48584 * 23 22 21 25 25 C 1.53777 * 113.62051 * 284.28667 * 23 22 21 26 26 C 1.53951 * 87.02496 * 220.05096 * 25 23 22 27 27 C 1.53783 * 87.11224 * 25.36048 * 26 25 23 28 28 H 1.09001 * 109.46995 * 183.69133 * 1 2 3 29 29 H 1.09004 * 109.46951 * 303.68198 * 1 2 3 30 30 H 1.08990 * 109.47491 * 63.68887 * 1 2 3 31 31 H 1.09001 * 109.46662 * 239.99899 * 2 1 3 32 32 H 1.08992 * 109.47293 * 120.00270 * 2 1 3 33 33 H 1.09001 * 109.46252 * 294.17522 * 8 7 6 34 34 H 1.08995 * 109.46487 * 54.14585 * 8 7 6 35 35 H 1.08992 * 109.50380 * 299.23865 * 9 8 7 36 36 H 1.09003 * 109.50670 * 179.11820 * 9 8 7 37 37 H 1.08996 * 109.52700 * 62.25133 * 10 9 8 38 38 H 0.97000 * 119.99797 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.50353 * 297.71572 * 19 10 9 40 40 H 1.08996 * 109.50318 * 177.59305 * 19 10 9 41 41 H 1.09002 * 109.46253 * 305.85583 * 20 7 6 42 42 H 1.09005 * 109.45914 * 65.82265 * 20 7 6 43 43 H 1.09001 * 109.47149 * 36.19313 * 22 21 6 44 44 H 1.09005 * 109.47028 * 156.19642 * 22 21 6 45 45 H 0.96693 * 113.99827 * 309.66054 * 24 23 22 46 46 H 1.09008 * 113.61122 * 334.57190 * 25 23 22 47 47 H 1.08999 * 113.61474 * 105.46542 * 25 23 22 48 48 H 1.09001 * 113.53150 * 270.81084 * 26 25 23 49 49 H 1.08996 * 113.74873 * 139.94490 * 26 25 23 50 50 H 1.08993 * 113.61633 * 220.09710 * 27 26 25 51 51 H 1.08997 * 113.68940 * 89.19442 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1426 2.2008 1.0378 5 7 2.6048 3.3459 0.6813 6 6 2.8166 3.3577 -0.6136 7 7 3.3112 4.4169 -1.3579 8 6 4.6968 4.1659 -1.7741 9 6 5.1597 5.2836 -2.7114 10 6 5.0612 6.6270 -1.9834 11 6 5.4587 7.7381 -2.9207 12 1 4.7536 8.5199 -3.1613 13 6 6.7228 7.7565 -3.4712 14 7 7.0696 8.7259 -4.2895 15 14 7.9427 6.4046 -3.0545 16 1 7.8037 5.2943 -4.0309 17 1 9.3234 6.9476 -3.1159 18 1 7.6707 5.8971 -1.6858 19 6 3.6183 6.8419 -1.5182 20 6 3.2001 5.6789 -0.6155 21 7 2.4634 2.1280 -1.0880 22 6 2.5289 1.6631 -2.4758 23 6 1.2704 2.1088 -3.2228 24 8 1.0574 3.5204 -3.1583 25 6 0.0219 1.2809 -2.8752 26 6 -0.3393 1.3464 -4.3703 27 6 1.1621 1.5338 -4.6451 28 1 -0.3633 -1.0255 0.0662 29 1 -0.3633 0.5699 0.8552 30 1 -0.3634 0.4555 -0.9211 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.3409 4.1390 -0.8952 34 1 4.7522 3.2096 -2.2942 35 1 4.5247 5.3021 -3.5971 36 1 6.1934 5.1053 -3.0078 37 1 5.7257 6.6228 -1.1195 38 1 7.9587 8.7386 -4.6770 39 1 2.9590 6.8850 -2.3850 40 1 3.5507 7.7768 -0.9619 41 1 2.1684 5.8216 -0.2940 42 1 3.8512 5.6449 0.2581 43 1 3.4084 2.0876 -2.9600 44 1 2.5948 0.5752 -2.4918 45 1 1.1010 3.8842 -2.2635 46 1 0.2493 0.2742 -2.5246 47 1 -0.6841 1.8051 -2.2311 48 1 -0.9433 2.2144 -4.6346 49 1 -0.7425 0.4141 -4.7657 50 1 1.3752 2.2619 -5.4277 51 1 1.7030 0.5972 -4.7796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001546469684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:33 Heat of formation + Delta-G solvation = 64.863025 kcal Electronic energy + Delta-G solvation = -31394.611626 eV Core-core repulsion = 27524.522320 eV Total energy + Delta-G solvation = -3870.089306 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -43.12273 -39.90113 -38.73062 -35.07171 -34.99089 -34.40159 -33.46742 -31.66299 -30.47647 -28.82877 -28.72192 -26.30100 -25.89115 -24.37041 -23.64339 -22.91592 -22.26613 -20.94434 -20.48172 -19.95948 -18.89485 -17.59792 -17.22955 -16.73926 -16.43580 -16.21672 -15.31322 -15.20076 -15.15480 -14.70878 -14.32363 -14.22583 -13.97771 -13.63940 -13.39388 -13.24253 -13.00248 -12.78168 -12.68343 -12.38862 -12.20743 -12.07472 -11.87410 -11.81232 -11.68923 -11.52881 -11.35847 -11.23814 -11.03679 -10.97164 -10.67003 -10.48987 -10.26208 -10.20215 -10.04125 -9.83646 -9.66520 -9.46129 -9.15650 -9.00353 -8.56411 -8.16538 -6.09115 -4.07739 1.67835 2.10248 2.82426 3.20703 3.33132 3.35004 3.67380 3.82059 4.05616 4.08025 4.28060 4.32151 4.37314 4.48166 4.51837 4.61082 4.87766 4.92351 5.00952 5.08031 5.17958 5.19732 5.22416 5.26003 5.35306 5.43633 5.46587 5.50471 5.56905 5.68185 5.71148 5.76447 5.78897 5.80585 5.88673 5.93041 5.95822 6.00207 6.04590 6.19636 6.34545 6.48818 6.63328 6.67760 6.84573 7.03467 7.21326 7.32524 7.48752 7.53715 7.74118 8.51067 8.77632 8.96180 9.53286 11.04405 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.003863 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.509162 B = 7247.029082 C = 8030.068556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.030 4.030 3 C 0.170 3.830 4 N -0.283 5.283 5 N -0.319 5.319 6 C 0.359 3.641 7 N -0.449 5.449 8 C 0.062 3.938 9 C -0.115 4.115 10 C 0.012 3.988 11 C -0.509 4.509 12 H 0.075 0.925 13 C 0.070 3.930 14 N -0.901 5.901 15 Si 0.883 3.117 16 H -0.279 1.279 17 H -0.297 1.297 18 H -0.267 1.267 19 C -0.097 4.097 20 C 0.073 3.927 21 N -0.477 5.477 22 C 0.088 3.912 23 C 0.098 3.902 24 O -0.521 6.521 25 C -0.171 4.171 26 C -0.130 4.130 27 C -0.123 4.123 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.042 0.958 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.382 0.618 46 H 0.092 0.908 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.085 0.915 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.362 -21.443 2.571 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.070 4.070 3 C -0.097 4.097 4 N -0.122 5.122 5 N -0.163 5.163 6 C 0.003 3.997 7 N -0.174 5.174 8 C -0.064 4.064 9 C -0.153 4.153 10 C -0.007 4.007 11 C -0.547 4.547 12 H 0.094 0.906 13 C -0.132 4.132 14 N -0.539 5.539 15 Si 0.714 3.286 16 H -0.206 1.206 17 H -0.224 1.224 18 H -0.192 1.192 19 C -0.135 4.135 20 C -0.054 4.054 21 N -0.172 5.172 22 C -0.036 4.036 23 C 0.055 3.945 24 O -0.328 6.328 25 C -0.209 4.209 26 C -0.168 4.168 27 C -0.161 4.161 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.114 0.886 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.069 0.931 43 H 0.124 0.876 44 H 0.120 0.880 45 H 0.232 0.768 46 H 0.111 0.889 47 H 0.093 0.907 48 H 0.104 0.896 49 H 0.089 0.911 50 H 0.103 0.897 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.586 -20.866 2.822 25.059 hybrid contribution 1.509 -1.161 -0.048 1.905 sum -12.077 -22.027 2.774 25.274 Atomic orbital electron populations 1.22102 0.93589 1.02669 1.03902 1.19917 0.96794 0.86362 1.03916 1.24697 1.04097 0.97958 0.82974 1.73961 1.16541 0.97920 1.23819 1.74714 1.20171 1.14573 1.06848 1.22965 1.01797 0.85743 0.89203 1.58818 1.21674 0.99423 1.37495 1.22357 0.84688 1.00095 0.99292 1.22091 0.99663 0.94916 0.98605 1.19214 0.92908 0.92640 0.95905 1.21020 0.99040 1.08496 1.26124 0.90650 1.25019 0.97995 0.95534 0.94629 1.69894 1.20353 1.32414 1.31220 0.86912 0.80327 0.82095 0.79313 1.20638 1.22406 1.19186 1.21575 0.98623 0.94841 0.98476 1.22218 1.01653 0.86154 0.95341 1.46205 1.49878 1.11923 1.09220 1.22663 1.01478 1.01155 0.78275 1.22519 0.91720 0.83408 0.96885 1.86517 1.93857 1.18059 1.34358 1.23929 0.98478 1.00631 0.97834 1.22743 0.96218 1.02340 0.95470 1.22990 0.97146 1.00912 0.95024 0.91519 0.91646 0.91126 0.90488 0.88583 0.93969 0.92143 0.90643 0.92735 0.95656 0.92686 0.91378 0.91333 0.90776 0.93148 0.87624 0.87959 0.76819 0.88926 0.90727 0.89559 0.91128 0.89651 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 9.61 37.16 0.36 -0.76 16 2 C -0.03 -0.23 6.25 -27.88 -0.17 -0.41 16 3 C 0.17 2.09 7.32 -154.02 -1.13 0.96 16 4 N -0.28 -4.52 12.18 32.99 0.40 -4.12 16 5 N -0.32 -5.55 11.44 30.31 0.35 -5.21 16 6 C 0.36 5.56 5.46 -318.88 -1.74 3.82 16 7 N -0.45 -7.26 3.90 -174.56 -0.68 -7.95 16 8 C 0.06 1.07 5.33 -3.84 -0.02 1.05 16 9 C -0.11 -2.34 4.84 -26.65 -0.13 -2.47 16 10 C 0.01 0.28 1.75 -91.65 -0.16 0.11 16 11 C -0.51 -13.85 9.14 -34.44 -0.31 -14.17 16 12 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 13 C 0.07 1.96 5.45 -17.82 -0.10 1.87 16 14 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 15 Si 0.88 21.43 24.37 -169.99 -4.14 17.28 16 16 H -0.28 -6.52 6.89 56.52 0.39 -6.13 16 17 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.27 -6.23 6.53 56.52 0.37 -5.86 16 19 C -0.10 -1.86 5.32 -26.65 -0.14 -2.00 16 20 C 0.07 1.23 4.87 -3.83 -0.02 1.22 16 21 N -0.48 -5.90 2.63 -114.08 -0.30 -6.20 16 22 C 0.09 0.85 5.58 -4.04 -0.02 0.83 16 23 C 0.10 0.97 1.51 -89.81 -0.14 0.83 16 24 O -0.52 -7.11 13.36 -35.23 -0.47 -7.58 16 25 C -0.17 -1.35 5.83 -25.83 -0.15 -1.51 16 26 C -0.13 -1.00 8.02 -25.83 -0.21 -1.20 16 27 C -0.12 -1.00 7.48 -25.91 -0.19 -1.20 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.48 3.83 -51.93 -0.20 0.28 16 31 H 0.08 0.43 6.94 -51.93 -0.36 0.07 16 32 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.91 6.11 -51.93 -0.32 0.60 16 35 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.05 1.18 3.38 -51.93 -0.18 1.00 16 37 H 0.03 0.60 7.19 -51.93 -0.37 0.22 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 39 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 42 H 0.05 0.90 8.11 -51.93 -0.42 0.48 16 43 H 0.11 1.14 6.16 -51.93 -0.32 0.82 16 44 H 0.10 0.68 6.89 -51.93 -0.36 0.32 16 45 H 0.38 5.48 6.41 45.56 0.29 5.78 16 46 H 0.09 0.56 6.44 -51.92 -0.33 0.22 16 47 H 0.07 0.68 7.48 -51.93 -0.39 0.30 16 48 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 378.98 15.07 5.71 5.71 Total: -1.00 -31.91 378.98 -10.26 -42.17 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -7.62 Total: 5.33 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -4.28 Total: -13.03 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: 0.54 Total: -49.89 kcal Atomic # 8 Polarization: -7.11 SS G_CDS: -0.47 Total: -7.58 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.14 Total: 17.28 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -31.91 -10.26 -42.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546469684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.038 kcal (2) G-P(sol) polarization free energy of solvation -31.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds