Wall clock time and date at job start Tue Mar 31 2020 18:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50694 * 109.47067 * 2 1 4 4 N 1.30297 * 126.34518 * 81.44619 * 3 2 1 5 5 N 1.28528 * 110.05051 * 179.97438 * 4 3 2 6 6 C 1.31211 * 109.86563 * 359.97438 * 5 4 3 7 7 N 1.38580 * 126.47791 * 180.02562 * 6 5 4 8 8 C 1.46842 * 111.00048 * 106.83628 * 7 6 5 9 9 C 1.53040 * 109.52340 * 174.16060 * 8 7 6 10 10 C 1.53119 * 109.27618 * 59.18096 * 9 8 7 11 11 C 1.50706 * 109.52472 * 182.44202 * 10 9 8 12 12 H 1.07996 * 120.00252 * 119.67583 * 11 10 9 13 13 C 1.37882 * 119.99565 * 299.68157 * 11 10 9 14 14 N 1.31513 * 119.99736 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00036 * 359.97438 * 13 11 10 16 16 H 1.48503 * 109.47065 * 90.00312 * 15 13 11 17 17 H 1.48497 * 109.46996 * 209.99816 * 15 13 11 18 18 H 1.48494 * 109.47065 * 329.99977 * 15 13 11 19 19 C 1.53119 * 109.16097 * 302.34227 * 10 9 8 20 20 C 1.46843 * 110.99939 * 342.62562 * 7 6 5 21 21 N 1.36452 * 107.04987 * 359.76053 * 6 5 4 22 22 C 1.46508 * 127.13601 * 180.24253 * 21 6 5 23 23 C 1.52995 * 109.46971 * 276.18970 * 22 21 6 24 24 O 1.42905 * 112.84779 * 55.48584 * 23 22 21 25 25 C 1.53777 * 113.62051 * 284.28667 * 23 22 21 26 26 C 1.53951 * 87.02496 * 220.05096 * 25 23 22 27 27 C 1.53783 * 87.11224 * 25.36048 * 26 25 23 28 28 H 1.09001 * 109.46995 * 183.69133 * 1 2 3 29 29 H 1.09004 * 109.46951 * 303.68198 * 1 2 3 30 30 H 1.08990 * 109.47491 * 63.68887 * 1 2 3 31 31 H 1.09001 * 109.46662 * 239.99899 * 2 1 3 32 32 H 1.08992 * 109.47293 * 120.00270 * 2 1 3 33 33 H 1.09001 * 109.46252 * 294.17522 * 8 7 6 34 34 H 1.08995 * 109.46487 * 54.14585 * 8 7 6 35 35 H 1.08992 * 109.50380 * 299.23865 * 9 8 7 36 36 H 1.09003 * 109.50670 * 179.11820 * 9 8 7 37 37 H 1.08996 * 109.52700 * 62.25133 * 10 9 8 38 38 H 0.97000 * 119.99797 * 180.02562 * 14 13 11 39 39 H 1.08996 * 109.50353 * 297.71572 * 19 10 9 40 40 H 1.08996 * 109.50318 * 177.59305 * 19 10 9 41 41 H 1.09002 * 109.46253 * 305.85583 * 20 7 6 42 42 H 1.09005 * 109.45914 * 65.82265 * 20 7 6 43 43 H 1.09001 * 109.47149 * 36.19313 * 22 21 6 44 44 H 1.09005 * 109.47028 * 156.19642 * 22 21 6 45 45 H 0.96693 * 113.99827 * 309.66054 * 24 23 22 46 46 H 1.09008 * 113.61122 * 334.57190 * 25 23 22 47 47 H 1.08999 * 113.61474 * 105.46542 * 25 23 22 48 48 H 1.09001 * 113.53150 * 270.81084 * 26 25 23 49 49 H 1.08996 * 113.74873 * 139.94490 * 26 25 23 50 50 H 1.08993 * 113.61633 * 220.09710 * 27 26 25 51 51 H 1.08997 * 113.68940 * 89.19442 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.1426 2.2008 1.0378 5 7 2.6048 3.3459 0.6813 6 6 2.8166 3.3577 -0.6136 7 7 3.3112 4.4169 -1.3579 8 6 4.6968 4.1659 -1.7741 9 6 5.1597 5.2836 -2.7114 10 6 5.0612 6.6270 -1.9834 11 6 5.4587 7.7381 -2.9207 12 1 4.7536 8.5199 -3.1613 13 6 6.7228 7.7565 -3.4712 14 7 7.0696 8.7259 -4.2895 15 14 7.9427 6.4046 -3.0545 16 1 7.8037 5.2943 -4.0309 17 1 9.3234 6.9476 -3.1159 18 1 7.6707 5.8971 -1.6858 19 6 3.6183 6.8419 -1.5182 20 6 3.2001 5.6789 -0.6155 21 7 2.4634 2.1280 -1.0880 22 6 2.5289 1.6631 -2.4758 23 6 1.2704 2.1088 -3.2228 24 8 1.0574 3.5204 -3.1583 25 6 0.0219 1.2809 -2.8752 26 6 -0.3393 1.3464 -4.3703 27 6 1.1621 1.5338 -4.6451 28 1 -0.3633 -1.0255 0.0662 29 1 -0.3633 0.5699 0.8552 30 1 -0.3634 0.4555 -0.9211 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 5.3409 4.1390 -0.8952 34 1 4.7522 3.2096 -2.2942 35 1 4.5247 5.3021 -3.5971 36 1 6.1934 5.1053 -3.0078 37 1 5.7257 6.6228 -1.1195 38 1 7.9587 8.7386 -4.6770 39 1 2.9590 6.8850 -2.3850 40 1 3.5507 7.7768 -0.9619 41 1 2.1684 5.8216 -0.2940 42 1 3.8512 5.6449 0.2581 43 1 3.4084 2.0876 -2.9600 44 1 2.5948 0.5752 -2.4918 45 1 1.1010 3.8842 -2.2635 46 1 0.2493 0.2742 -2.5246 47 1 -0.6841 1.8051 -2.2311 48 1 -0.9433 2.2144 -4.6346 49 1 -0.7425 0.4141 -4.7657 50 1 1.3752 2.2619 -5.4277 51 1 1.7030 0.5972 -4.7796 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001546469684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:57:28 Heat of formation + Delta-G solvation = 44.391993 kcal Electronic energy + Delta-G solvation = -31395.499316 eV Core-core repulsion = 27524.522320 eV Total energy + Delta-G solvation = -3870.976996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -44.17584 -40.63407 -40.17724 -36.23422 -35.94682 -35.57115 -34.56156 -33.49988 -31.98392 -30.02049 -29.54078 -27.72788 -26.80027 -25.21043 -24.52192 -24.27622 -23.79149 -22.21743 -21.39923 -20.74486 -20.42008 -18.84992 -18.61099 -18.20262 -17.55492 -17.02336 -16.50946 -16.30722 -16.10027 -15.88131 -15.50711 -15.31731 -15.07104 -14.88877 -14.79428 -14.36627 -14.25468 -14.11686 -13.80243 -13.45359 -13.36945 -13.27643 -12.86736 -12.80091 -12.77445 -12.50237 -12.29153 -12.20081 -12.17130 -12.09603 -11.87626 -11.78929 -11.75999 -11.59706 -11.46657 -11.05671 -11.03281 -10.94902 -10.69919 -10.60651 -10.45011 -9.39096 -8.28987 -6.32344 0.65010 1.12035 1.26700 1.34954 1.44102 1.73377 2.31554 2.56581 2.98462 3.05654 3.30085 3.38501 3.56390 3.64865 3.69900 3.79094 3.85909 3.91169 3.96241 4.08005 4.19832 4.22179 4.33232 4.35298 4.40849 4.44874 4.50461 4.57811 4.63368 4.69132 4.71445 4.75400 4.81208 4.83804 4.91330 5.01182 5.01789 5.03913 5.09302 5.14740 5.16888 5.20116 5.40440 5.40726 5.44954 5.56747 5.64982 5.67893 5.76149 6.17871 6.32573 6.54713 6.74516 7.32539 7.68958 8.88179 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015276 B = 0.003863 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.509162 B = 7247.029082 C = 8030.068556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.032 4.032 3 C 0.193 3.807 4 N -0.326 5.326 5 N -0.351 5.351 6 C 0.347 3.653 7 N -0.445 5.445 8 C 0.071 3.929 9 C -0.107 4.107 10 C 0.011 3.989 11 C -0.514 4.514 12 H 0.034 0.966 13 C 0.012 3.988 14 N -0.950 5.950 15 Si 0.946 3.054 16 H -0.259 1.259 17 H -0.300 1.300 18 H -0.251 1.251 19 C -0.089 4.089 20 C 0.086 3.914 21 N -0.468 5.468 22 C 0.083 3.917 23 C 0.080 3.920 24 O -0.547 6.547 25 C -0.160 4.160 26 C -0.129 4.129 27 C -0.119 4.119 28 H 0.094 0.906 29 H 0.042 0.958 30 H 0.070 0.930 31 H 0.112 0.888 32 H 0.105 0.895 33 H 0.035 0.965 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.019 0.981 38 H 0.265 0.735 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.084 0.916 42 H 0.042 0.958 43 H 0.097 0.903 44 H 0.146 0.854 45 H 0.374 0.626 46 H 0.123 0.877 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.095 0.905 50 H 0.064 0.936 51 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.811 -26.478 2.678 29.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.072 4.072 3 C -0.075 4.075 4 N -0.165 5.165 5 N -0.196 5.196 6 C -0.011 4.011 7 N -0.169 5.169 8 C -0.056 4.056 9 C -0.145 4.145 10 C -0.007 4.007 11 C -0.552 4.552 12 H 0.053 0.947 13 C -0.185 4.185 14 N -0.591 5.591 15 Si 0.773 3.227 16 H -0.185 1.185 17 H -0.228 1.228 18 H -0.175 1.175 19 C -0.126 4.126 20 C -0.041 4.041 21 N -0.163 5.163 22 C -0.039 4.039 23 C 0.038 3.962 24 O -0.353 6.353 25 C -0.197 4.197 26 C -0.166 4.166 27 C -0.156 4.156 28 H 0.113 0.887 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.131 0.869 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.107 0.893 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.037 0.963 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.061 0.939 43 H 0.115 0.885 44 H 0.164 0.836 45 H 0.223 0.777 46 H 0.141 0.859 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.113 0.887 50 H 0.083 0.917 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.066 -25.929 2.928 29.643 hybrid contribution 1.520 0.429 -0.104 1.583 sum -12.546 -25.500 2.823 28.559 Atomic orbital electron populations 1.22078 0.92755 1.04077 1.02920 1.20268 0.97297 0.83489 1.06124 1.25605 1.01082 0.98978 0.81867 1.73900 1.18724 0.98219 1.25650 1.74605 1.21038 1.15863 1.08052 1.22739 1.02712 0.86612 0.88995 1.58725 1.21128 0.99458 1.37636 1.22208 0.85106 0.99882 0.98412 1.21853 0.99230 0.94671 0.98745 1.19162 0.94494 0.92424 0.94665 1.21317 0.98399 1.08899 1.26545 0.94728 1.25867 1.00108 0.98012 0.94471 1.70052 1.21080 1.34876 1.33079 0.85891 0.77136 0.79467 0.80252 1.18488 1.22799 1.17549 1.21420 0.96550 0.96090 0.98589 1.21979 1.01922 0.85920 0.94281 1.46333 1.48960 1.10661 1.10330 1.22973 1.00888 1.03582 0.76424 1.22908 0.92874 0.81935 0.98521 1.86509 1.94199 1.20746 1.33868 1.23922 0.96755 1.01377 0.97662 1.22712 0.95801 1.02648 0.95474 1.23106 0.97807 1.01648 0.93059 0.88701 0.93898 0.91091 0.86939 0.87704 0.94629 0.89342 0.91407 0.93440 0.96300 0.92611 0.92190 0.91528 0.89771 0.93917 0.88481 0.83612 0.77725 0.85921 0.92361 0.91768 0.88654 0.91743 0.85376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.61 71.98 0.69 -0.85 16 2 C -0.03 -0.35 6.25 29.85 0.19 -0.16 16 3 C 0.19 4.17 7.32 137.64 1.01 5.18 16 4 N -0.33 -10.01 12.18 -49.54 -0.60 -10.61 16 5 N -0.35 -12.02 11.44 -58.01 -0.66 -12.69 16 6 C 0.35 10.31 5.46 260.12 1.42 11.73 16 7 N -0.44 -14.05 3.90 -706.17 -2.76 -16.81 16 8 C 0.07 2.31 5.33 86.33 0.46 2.77 16 9 C -0.11 -4.29 4.84 30.65 0.15 -4.14 16 10 C 0.01 0.52 1.75 -11.46 -0.02 0.50 16 11 C -0.51 -29.08 9.14 25.60 0.23 -28.84 16 12 H 0.03 2.17 7.99 -2.91 -0.02 2.15 16 13 C 0.01 0.71 5.45 84.66 0.46 1.17 16 14 N -0.95 -59.45 13.96 21.45 0.30 -59.15 16 15 Si 0.95 44.30 24.37 68.60 1.67 45.97 16 16 H -0.26 -11.25 6.89 99.48 0.69 -10.57 16 17 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 18 H -0.25 -11.05 6.53 99.48 0.65 -10.40 16 19 C -0.09 -3.48 5.32 30.65 0.16 -3.32 16 20 C 0.09 2.93 4.87 86.33 0.42 3.35 16 21 N -0.47 -10.29 2.63 -514.85 -1.36 -11.64 16 22 C 0.08 1.29 5.58 86.38 0.48 1.77 16 23 C 0.08 1.37 1.51 -10.27 -0.02 1.35 16 24 O -0.55 -14.67 13.36 -148.98 -1.99 -16.66 16 25 C -0.16 -1.98 5.83 31.18 0.18 -1.79 16 26 C -0.13 -1.60 8.02 31.18 0.25 -1.35 16 27 C -0.12 -1.56 7.48 31.12 0.23 -1.33 16 28 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.68 3.83 -2.39 -0.01 0.67 16 31 H 0.11 0.47 6.94 -2.39 -0.02 0.45 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 2.42 6.11 -2.39 -0.01 2.40 16 35 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.05 1.97 3.38 -2.39 -0.01 1.96 16 37 H 0.02 0.89 7.19 -2.39 -0.02 0.87 16 38 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.08 2.71 8.10 -2.39 -0.02 2.69 16 42 H 0.04 1.53 8.11 -2.38 -0.02 1.51 16 43 H 0.10 1.73 6.16 -2.39 -0.01 1.72 16 44 H 0.15 0.98 6.89 -2.38 -0.02 0.96 16 45 H 0.37 10.76 6.41 -74.06 -0.47 10.29 16 46 H 0.12 0.76 6.44 -2.38 -0.02 0.75 16 47 H 0.06 0.94 7.48 -2.39 -0.02 0.93 16 48 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 49 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.13 0.81 8.10 -2.39 -0.02 0.79 16 Total: -1.00 -74.47 378.98 1.30 -73.17 By element: Atomic # 1 Polarization: 21.99 SS G_CDS: 0.39 Total: 22.38 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 6.30 Total: -13.97 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -5.08 Total: -110.90 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -1.99 Total: -16.66 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.67 Total: 45.97 kcal Total: -74.47 1.30 -73.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001546469684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.561 kcal (2) G-P(sol) polarization free energy of solvation -74.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds