Wall clock time and date at job start Tue Mar 31 2020 18:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47261 * 2 1 4 4 N 1.33317 * 126.10328 * 270.02683 * 3 2 1 5 5 C 1.30859 * 109.68073 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16279 * 359.73271 * 5 4 3 7 7 H 0.97007 * 126.47176 * 180.29579 * 6 5 4 8 8 C 1.36663 * 126.10706 * 90.00471 * 3 2 1 9 9 C 1.46761 * 126.84473 * 0.02562 * 8 3 2 10 10 O 1.21688 * 120.00049 * 325.85600 * 9 8 3 11 11 N 1.34774 * 120.00343 * 145.85414 * 9 8 3 12 12 C 1.46934 * 120.62689 * 356.19419 * 11 9 8 13 13 C 1.53186 * 108.77345 * 233.58378 * 12 11 9 14 14 C 1.53048 * 109.30960 * 305.36191 * 13 12 11 15 15 C 1.53035 * 109.53574 * 61.37098 * 14 13 12 16 16 H 1.08994 * 109.50354 * 58.61999 * 15 14 13 17 17 C 1.53001 * 109.49646 * 178.68205 * 15 14 13 18 18 C 1.46926 * 120.63472 * 175.90816 * 11 9 8 19 19 H 1.08996 * 109.58702 * 246.20802 * 18 11 9 20 20 C 1.52999 * 109.58389 * 6.62911 * 18 11 9 21 21 C 1.52997 * 109.47009 * 67.86529 * 20 18 11 22 22 N 1.46501 * 109.47052 * 186.47506 * 21 20 18 23 23 C 1.36938 * 119.99782 * 179.97438 * 22 21 20 24 24 H 1.07995 * 120.00258 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00096 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99624 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00411 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46861 * 359.97438 * 27 25 23 29 29 H 1.48506 * 109.47444 * 119.99518 * 27 25 23 30 30 H 1.48498 * 109.47315 * 239.99883 * 27 25 23 31 31 H 1.09009 * 109.46830 * 299.99793 * 1 2 3 32 32 H 1.08993 * 109.47485 * 59.99758 * 1 2 3 33 33 H 1.09000 * 109.47340 * 180.02562 * 1 2 3 34 34 H 1.09009 * 109.46830 * 240.00206 * 2 1 3 35 35 H 1.09002 * 109.47714 * 120.00348 * 2 1 3 36 36 H 1.08003 * 125.41865 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.58517 * 353.36856 * 12 11 9 38 38 H 1.08997 * 109.58298 * 113.64855 * 12 11 9 39 39 H 1.09002 * 109.50196 * 65.31141 * 13 12 11 40 40 H 1.08997 * 109.50059 * 185.38160 * 13 12 11 41 41 H 1.09003 * 109.45665 * 181.38859 * 14 13 12 42 42 H 1.08993 * 109.46146 * 301.34492 * 14 13 12 43 43 H 1.08999 * 109.47284 * 59.99235 * 17 15 14 44 44 H 1.09000 * 109.47233 * 179.97438 * 17 15 14 45 45 H 1.09003 * 109.47377 * 299.99585 * 17 15 14 46 46 H 1.08995 * 109.46937 * 187.86258 * 20 18 11 47 47 H 1.08994 * 109.47484 * 307.86430 * 20 18 11 48 48 H 1.08999 * 109.46977 * 306.47546 * 21 20 18 49 49 H 1.08999 * 109.47258 * 66.47796 * 21 20 18 50 50 H 0.96994 * 120.00298 * 0.02562 * 22 21 20 51 51 H 0.97007 * 120.00118 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1616 -1.0771 5 6 2.7118 3.3452 -0.7072 6 7 2.7279 3.4077 0.6362 7 1 2.9916 4.1701 1.1749 8 6 2.3009 2.1801 1.1041 9 6 2.1580 1.7742 2.5072 10 8 1.2633 1.0167 2.8335 11 7 3.0178 2.2404 3.4345 12 6 4.1523 3.0886 3.0442 13 6 5.4411 2.4746 3.5998 14 6 5.2961 2.2747 5.1102 15 6 4.1417 1.3100 5.3903 16 1 4.3345 0.3583 4.8953 17 6 4.0186 1.0852 6.8987 18 6 2.8349 1.9153 4.8557 19 1 2.5955 2.8227 5.4102 20 6 1.6981 0.9027 5.0080 21 6 2.1240 -0.4368 4.4037 22 7 0.9857 -1.3590 4.4094 23 6 1.1295 -2.6272 3.9132 24 1 2.0821 -2.9476 3.5179 25 6 0.0509 -3.5009 3.9181 26 7 -1.1100 -3.1105 4.4003 27 14 0.2472 -5.2311 3.2418 28 1 1.6402 -5.4205 2.7636 29 1 -0.0477 -6.2174 4.3122 30 1 -0.6951 -5.4307 2.1116 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.9948 4.1458 -1.3745 37 1 4.2119 3.1415 1.9571 38 1 4.0168 4.0904 3.4519 39 1 5.6214 1.5121 3.1211 40 1 6.2784 3.1431 3.3995 41 1 6.2210 1.8608 5.5121 42 1 5.0913 3.2340 5.5855 43 1 3.8247 2.0370 7.3933 44 1 3.1960 0.3984 7.0978 45 1 4.9473 0.6604 7.2798 46 1 1.4706 0.7683 6.0654 47 1 0.8125 1.2700 4.4896 48 1 2.4612 -0.2822 3.3787 49 1 2.9371 -0.8595 4.9938 50 1 0.1301 -1.0712 4.7640 51 1 -1.8637 -3.7212 4.4041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565940660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:27 Heat of formation + Delta-G solvation = 64.260114 kcal Electronic energy + Delta-G solvation = -31603.719740 eV Core-core repulsion = 27733.604291 eV Total energy + Delta-G solvation = -3870.115450 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.34867 -40.47882 -37.54484 -35.22916 -34.21233 -33.48521 -32.71305 -31.81378 -30.80257 -29.25699 -28.08613 -26.54203 -25.31093 -23.76580 -23.18655 -22.45792 -22.14697 -21.37647 -21.07871 -19.32412 -18.99674 -17.65556 -16.78835 -16.51399 -15.99050 -15.63345 -15.04006 -14.84800 -14.69273 -14.47418 -14.22127 -14.02067 -13.55845 -13.52616 -13.26878 -13.10404 -13.02400 -12.79281 -12.52568 -12.47597 -11.99259 -11.91013 -11.73059 -11.37509 -11.11353 -10.99774 -10.88810 -10.83890 -10.65662 -10.54456 -10.50172 -10.22262 -10.18111 -10.01425 -9.90540 -9.78002 -9.48586 -8.83898 -8.67975 -8.34055 -8.28875 -6.56575 -5.53445 -2.77299 1.46808 2.71494 2.86130 3.01311 3.46786 3.55845 3.61237 3.63362 4.38647 4.48288 4.56921 4.68557 4.75833 4.78924 4.86846 5.03432 5.06337 5.13626 5.27404 5.34547 5.47131 5.52696 5.58058 5.64046 5.71353 5.78039 5.78791 5.81998 5.89271 5.96331 5.96505 6.00615 6.05958 6.12798 6.28226 6.33574 6.49008 6.52333 6.58018 6.62112 6.65549 6.71356 6.75425 6.92722 7.15967 7.21144 7.31496 7.48255 7.89563 7.95513 8.43139 8.66447 9.77065 10.42734 10.76986 11.70309 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.005372 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.614824 B = 5211.248209 C = 7508.871527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.043 4.043 3 C 0.095 3.905 4 N -0.495 5.495 5 C 0.200 3.800 6 N -0.560 5.560 7 H 0.420 0.580 8 C -0.078 4.078 9 C 0.569 3.431 10 O -0.449 6.449 11 N -0.610 5.610 12 C 0.099 3.901 13 C -0.133 4.133 14 C -0.113 4.113 15 C -0.109 4.109 16 H 0.086 0.914 17 C -0.145 4.145 18 C 0.163 3.837 19 H 0.067 0.933 20 C -0.132 4.132 21 C 0.174 3.826 22 N -0.721 5.721 23 C -0.219 4.219 24 H 0.064 0.936 25 C -0.018 4.018 26 N -0.935 5.935 27 Si 0.898 3.102 28 H -0.283 1.283 29 H -0.295 1.295 30 H -0.293 1.293 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.210 0.790 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.050 0.950 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.101 0.899 48 H 0.027 0.973 49 H -0.003 1.003 50 H 0.381 0.619 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.923 20.154 -3.214 24.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.081 4.081 3 C -0.038 4.038 4 N -0.215 5.215 5 C -0.083 4.083 6 N -0.168 5.168 7 H 0.260 0.740 8 C -0.193 4.193 9 C 0.355 3.645 10 O -0.320 6.320 11 N -0.346 5.346 12 C -0.025 4.025 13 C -0.171 4.171 14 C -0.151 4.151 15 C -0.128 4.128 16 H 0.105 0.895 17 C -0.202 4.202 18 C 0.061 3.939 19 H 0.084 0.916 20 C -0.169 4.169 21 C 0.047 3.953 22 N -0.363 5.363 23 C -0.351 4.351 24 H 0.082 0.918 25 C -0.213 4.213 26 N -0.585 5.585 27 Si 0.730 3.270 28 H -0.208 1.208 29 H -0.222 1.222 30 H -0.221 1.221 31 H 0.084 0.916 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.227 0.773 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.119 0.881 48 H 0.045 0.955 49 H 0.015 0.985 50 H 0.214 0.786 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 13.376 19.281 -3.913 23.790 hybrid contribution 0.288 0.045 0.665 0.726 sum 13.664 19.325 -3.247 23.890 Atomic orbital electron populations 1.21572 0.93761 1.02361 1.01472 1.19958 0.96905 0.88056 1.03213 1.21112 0.98939 0.97333 0.86428 1.70097 1.18010 1.02666 1.30726 1.25048 1.02984 0.98088 0.82196 1.43694 1.51223 1.13276 1.08627 0.74003 1.21189 1.14422 0.88049 0.95650 1.16991 0.83317 0.81823 0.82369 1.91153 1.32268 1.31039 1.77511 1.47934 1.27419 1.51848 1.07351 1.21886 0.86578 0.93748 1.00297 1.21883 0.96505 1.01855 0.96903 1.21591 0.98767 0.99587 0.95139 1.21740 0.94203 0.99874 0.96994 0.89534 1.21787 1.02417 1.01656 0.94372 1.21408 0.95800 0.97724 0.79005 0.91556 1.22392 0.98233 0.96026 1.00266 1.20779 0.90479 0.87551 0.96487 1.42201 1.09433 1.10588 1.74118 1.19212 0.95639 0.88951 1.31269 0.91817 1.24631 0.95912 0.98047 1.02753 1.69677 1.01064 1.35091 1.52693 0.86232 0.76989 0.85548 0.78236 1.20809 1.22241 1.22070 0.91598 0.93871 0.91912 0.91120 0.89333 0.77319 0.90167 0.91727 0.91175 0.91042 0.91714 0.92104 0.93056 0.91380 0.92701 0.92795 0.88068 0.95508 0.98535 0.78570 0.93974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.89 37.15 0.37 -2.05 16 2 C -0.04 -0.75 5.86 -27.88 -0.16 -0.91 16 3 C 0.09 1.51 6.39 -82.52 -0.53 0.99 16 4 N -0.50 -7.11 11.20 -10.64 -0.12 -7.23 16 5 C 0.20 1.95 13.01 -90.57 -1.18 0.77 16 6 N -0.56 -5.28 4.73 -10.79 -0.05 -5.33 16 7 H 0.42 2.49 7.34 -40.82 -0.30 2.19 16 8 C -0.08 -1.10 6.11 -82.15 -0.50 -1.60 16 9 C 0.57 8.92 6.32 -12.82 -0.08 8.84 16 10 O -0.45 -8.89 8.83 5.20 0.05 -8.84 16 11 N -0.61 -7.63 2.92 -166.47 -0.49 -8.12 16 12 C 0.10 0.84 5.54 -3.71 -0.02 0.82 16 13 C -0.13 -1.12 6.08 -26.61 -0.16 -1.28 16 14 C -0.11 -1.01 5.16 -26.69 -0.14 -1.15 16 15 C -0.11 -1.30 1.93 -90.28 -0.17 -1.47 16 16 H 0.09 1.27 6.18 -51.93 -0.32 0.95 16 17 C -0.14 -1.63 8.97 37.16 0.33 -1.30 16 18 C 0.16 2.15 2.68 -67.38 -0.18 1.97 16 19 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.13 -2.32 4.16 -26.73 -0.11 -2.43 16 21 C 0.17 3.76 4.22 -4.04 -0.02 3.74 16 22 N -0.72 -19.40 5.52 -59.91 -0.33 -19.73 16 23 C -0.22 -6.44 9.99 -15.06 -0.15 -6.59 16 24 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 25 C -0.02 -0.55 5.50 -17.43 -0.10 -0.65 16 26 N -0.93 -29.63 13.06 55.49 0.72 -28.90 16 27 Si 0.90 23.53 29.55 -169.99 -5.02 18.50 16 28 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 29 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 30 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 31 H 0.06 1.31 7.57 -51.92 -0.39 0.92 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 35 H 0.09 1.76 7.50 -51.93 -0.39 1.37 16 36 H 0.21 1.01 8.06 -52.48 -0.42 0.59 16 37 H 0.08 0.64 4.60 -51.93 -0.24 0.40 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.91 6.83 -51.93 -0.35 0.56 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.94 7.07 -51.93 -0.37 0.57 16 47 H 0.10 2.01 5.74 -53.07 -0.30 1.70 16 48 H 0.03 0.62 5.32 -51.93 -0.28 0.34 16 49 H 0.00 -0.06 6.63 -51.93 -0.34 -0.41 16 50 H 0.38 10.99 7.67 -40.82 -0.31 10.68 16 51 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 385.15 15.07 5.80 5.80 Total: -1.00 -35.66 385.15 -10.46 -46.12 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -8.22 Total: 10.03 kcal Atomic # 6 Polarization: 0.51 SS G_CDS: -2.80 Total: -2.30 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -0.26 Total: -69.32 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.05 Total: -8.84 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -5.02 Total: 18.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.66 -10.46 -46.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565940660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.377 kcal (2) G-P(sol) polarization free energy of solvation -35.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds