Wall clock time and date at job start Tue Mar 31 2020 18:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47261 * 2 1 4 4 N 1.33317 * 126.10328 * 270.02683 * 3 2 1 5 5 C 1.30859 * 109.68073 * 179.97438 * 4 3 2 6 6 N 1.34495 * 109.16279 * 359.73271 * 5 4 3 7 7 H 0.97007 * 126.47176 * 180.29579 * 6 5 4 8 8 C 1.36663 * 126.10706 * 90.00471 * 3 2 1 9 9 C 1.46761 * 126.84473 * 0.02562 * 8 3 2 10 10 O 1.21688 * 120.00049 * 325.85600 * 9 8 3 11 11 N 1.34774 * 120.00343 * 145.85414 * 9 8 3 12 12 C 1.46934 * 120.62689 * 356.19419 * 11 9 8 13 13 C 1.53186 * 108.77345 * 233.58378 * 12 11 9 14 14 C 1.53048 * 109.30960 * 305.36191 * 13 12 11 15 15 C 1.53035 * 109.53574 * 61.37098 * 14 13 12 16 16 H 1.08994 * 109.50354 * 58.61999 * 15 14 13 17 17 C 1.53001 * 109.49646 * 178.68205 * 15 14 13 18 18 C 1.46926 * 120.63472 * 175.90816 * 11 9 8 19 19 H 1.08996 * 109.58702 * 246.20802 * 18 11 9 20 20 C 1.52999 * 109.58389 * 6.62911 * 18 11 9 21 21 C 1.52997 * 109.47009 * 67.86529 * 20 18 11 22 22 N 1.46501 * 109.47052 * 186.47506 * 21 20 18 23 23 C 1.36938 * 119.99782 * 179.97438 * 22 21 20 24 24 H 1.07995 * 120.00258 * 0.02562 * 23 22 21 25 25 C 1.38812 * 120.00096 * 180.02562 * 23 22 21 26 26 N 1.31622 * 119.99624 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 120.00411 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.46861 * 359.97438 * 27 25 23 29 29 H 1.48506 * 109.47444 * 119.99518 * 27 25 23 30 30 H 1.48498 * 109.47315 * 239.99883 * 27 25 23 31 31 H 1.09009 * 109.46830 * 299.99793 * 1 2 3 32 32 H 1.08993 * 109.47485 * 59.99758 * 1 2 3 33 33 H 1.09000 * 109.47340 * 180.02562 * 1 2 3 34 34 H 1.09009 * 109.46830 * 240.00206 * 2 1 3 35 35 H 1.09002 * 109.47714 * 120.00348 * 2 1 3 36 36 H 1.08003 * 125.41865 * 179.97438 * 5 4 3 37 37 H 1.08995 * 109.58517 * 353.36856 * 12 11 9 38 38 H 1.08997 * 109.58298 * 113.64855 * 12 11 9 39 39 H 1.09002 * 109.50196 * 65.31141 * 13 12 11 40 40 H 1.08997 * 109.50059 * 185.38160 * 13 12 11 41 41 H 1.09003 * 109.45665 * 181.38859 * 14 13 12 42 42 H 1.08993 * 109.46146 * 301.34492 * 14 13 12 43 43 H 1.08999 * 109.47284 * 59.99235 * 17 15 14 44 44 H 1.09000 * 109.47233 * 179.97438 * 17 15 14 45 45 H 1.09003 * 109.47377 * 299.99585 * 17 15 14 46 46 H 1.08995 * 109.46937 * 187.86258 * 20 18 11 47 47 H 1.08994 * 109.47484 * 307.86430 * 20 18 11 48 48 H 1.08999 * 109.46977 * 306.47546 * 21 20 18 49 49 H 1.08999 * 109.47258 * 66.47796 * 21 20 18 50 50 H 0.96994 * 120.00298 * 0.02562 * 22 21 20 51 51 H 0.97007 * 120.00118 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2937 2.1616 -1.0771 5 6 2.7118 3.3452 -0.7072 6 7 2.7279 3.4077 0.6362 7 1 2.9916 4.1701 1.1749 8 6 2.3009 2.1801 1.1041 9 6 2.1580 1.7742 2.5072 10 8 1.2633 1.0167 2.8335 11 7 3.0178 2.2404 3.4345 12 6 4.1523 3.0886 3.0442 13 6 5.4411 2.4746 3.5998 14 6 5.2961 2.2747 5.1102 15 6 4.1417 1.3100 5.3903 16 1 4.3345 0.3583 4.8953 17 6 4.0186 1.0852 6.8987 18 6 2.8349 1.9153 4.8557 19 1 2.5955 2.8227 5.4102 20 6 1.6981 0.9027 5.0080 21 6 2.1240 -0.4368 4.4037 22 7 0.9857 -1.3590 4.4094 23 6 1.1295 -2.6272 3.9132 24 1 2.0821 -2.9476 3.5179 25 6 0.0509 -3.5009 3.9181 26 7 -1.1100 -3.1105 4.4003 27 14 0.2472 -5.2311 3.2418 28 1 1.6402 -5.4205 2.7636 29 1 -0.0477 -6.2174 4.3122 30 1 -0.6951 -5.4307 2.1116 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.9948 4.1458 -1.3745 37 1 4.2119 3.1415 1.9571 38 1 4.0168 4.0904 3.4519 39 1 5.6214 1.5121 3.1211 40 1 6.2784 3.1431 3.3995 41 1 6.2210 1.8608 5.5121 42 1 5.0913 3.2340 5.5855 43 1 3.8247 2.0370 7.3933 44 1 3.1960 0.3984 7.0978 45 1 4.9473 0.6604 7.2798 46 1 1.4706 0.7683 6.0654 47 1 0.8125 1.2700 4.4896 48 1 2.4612 -0.2822 3.3787 49 1 2.9371 -0.8595 4.9938 50 1 0.1301 -1.0712 4.7640 51 1 -1.8637 -3.7212 4.4041 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001565940660.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:26 Heat of formation + Delta-G solvation = 40.581266 kcal Electronic energy + Delta-G solvation = -31604.746532 eV Core-core repulsion = 27733.604291 eV Total energy + Delta-G solvation = -3871.142242 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.33148 -41.57986 -38.61705 -36.83332 -35.52070 -34.88493 -33.97758 -32.90817 -32.56533 -30.54089 -29.45756 -27.54374 -26.69649 -25.33552 -24.59544 -23.67524 -23.41026 -22.53144 -22.03259 -20.48632 -20.08351 -19.11008 -18.48617 -17.62999 -17.05514 -16.90197 -16.48028 -16.04816 -15.78168 -15.69353 -15.50251 -15.29363 -15.05180 -14.80236 -14.51905 -14.43592 -14.36146 -14.19917 -13.76909 -13.48569 -13.32462 -13.17076 -12.91708 -12.88255 -12.58021 -12.44231 -12.39587 -12.24904 -12.05852 -11.97944 -11.91825 -11.74429 -11.62967 -11.39606 -11.21863 -11.12241 -10.86351 -10.79614 -10.09017 -9.56763 -9.34435 -8.78311 -7.87910 -5.12391 0.44281 1.42968 1.45406 1.54660 1.79311 1.82236 2.05597 2.44208 2.58831 3.44551 3.47395 3.58691 3.77505 3.79470 3.88546 4.02984 4.06394 4.11442 4.23618 4.26039 4.34052 4.47223 4.49346 4.55770 4.57523 4.63520 4.65850 4.70616 4.79117 4.80769 4.82805 4.89125 4.96149 5.03226 5.05957 5.11137 5.18426 5.22693 5.26421 5.33707 5.36742 5.45217 5.47658 5.51652 5.55476 5.58063 5.80634 6.34497 6.39722 6.46387 6.99017 7.28081 7.40009 8.22933 8.45993 9.36879 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009270 B = 0.005372 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3019.614824 B = 5211.248209 C = 7508.871527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.036 4.036 3 C 0.069 3.931 4 N -0.533 5.533 5 C 0.233 3.767 6 N -0.539 5.539 7 H 0.440 0.560 8 C -0.086 4.086 9 C 0.563 3.437 10 O -0.506 6.506 11 N -0.604 5.604 12 C 0.093 3.907 13 C -0.131 4.131 14 C -0.106 4.106 15 C -0.106 4.106 16 H 0.049 0.951 17 C -0.142 4.142 18 C 0.168 3.832 19 H 0.097 0.903 20 C -0.118 4.118 21 C 0.186 3.814 22 N -0.731 5.731 23 C -0.225 4.225 24 H 0.062 0.938 25 C -0.078 4.078 26 N -0.971 5.971 27 Si 0.965 3.035 28 H -0.270 1.270 29 H -0.290 1.290 30 H -0.293 1.293 31 H 0.039 0.961 32 H 0.060 0.940 33 H 0.046 0.954 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.267 0.733 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.042 0.958 40 H 0.106 0.894 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.036 0.964 45 H 0.064 0.936 46 H 0.050 0.950 47 H 0.078 0.922 48 H 0.017 0.983 49 H -0.010 1.010 50 H 0.368 0.632 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.833 23.704 -3.881 29.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.075 4.075 3 C -0.064 4.064 4 N -0.253 5.253 5 C -0.052 4.052 6 N -0.148 5.148 7 H 0.285 0.715 8 C -0.203 4.203 9 C 0.351 3.649 10 O -0.381 6.381 11 N -0.338 5.338 12 C -0.029 4.029 13 C -0.169 4.169 14 C -0.144 4.144 15 C -0.126 4.126 16 H 0.068 0.932 17 C -0.199 4.199 18 C 0.065 3.935 19 H 0.114 0.886 20 C -0.156 4.156 21 C 0.060 3.940 22 N -0.372 5.372 23 C -0.357 4.357 24 H 0.080 0.920 25 C -0.269 4.269 26 N -0.623 5.623 27 Si 0.795 3.205 28 H -0.194 1.194 29 H -0.218 1.218 30 H -0.221 1.221 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.095 0.905 35 H 0.070 0.930 36 H 0.282 0.718 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.061 0.939 40 H 0.124 0.876 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.055 0.945 45 H 0.083 0.917 46 H 0.068 0.932 47 H 0.097 0.903 48 H 0.035 0.965 49 H 0.008 0.992 50 H 0.199 0.801 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.378 22.896 -4.559 28.517 hybrid contribution -0.540 -0.953 0.831 1.375 sum 15.839 21.942 -3.728 27.317 Atomic orbital electron populations 1.21432 0.94587 1.01081 1.00894 1.19707 0.96166 0.90058 1.01569 1.20814 1.00681 0.96862 0.88044 1.70042 1.20120 1.04537 1.30605 1.26091 0.99060 0.97483 0.82516 1.43537 1.50134 1.12267 1.08848 0.71517 1.20801 1.15321 0.89777 0.94366 1.17327 0.83016 0.81190 0.83400 1.91139 1.34731 1.33668 1.78535 1.48026 1.27787 1.51497 1.06503 1.22260 0.84867 0.94620 1.01179 1.21892 0.97495 1.01344 0.96148 1.21560 0.97335 0.99649 0.95825 1.21673 0.94906 0.99104 0.96876 0.93244 1.21760 1.01726 1.02237 0.94204 1.21363 0.94642 0.97431 0.80014 0.88566 1.22146 0.99440 0.95033 0.98981 1.20797 0.88508 0.88686 0.95973 1.42403 1.10220 1.10804 1.73739 1.19515 0.95546 0.90102 1.30586 0.92037 1.25431 0.95631 1.02132 1.03722 1.69843 1.01760 1.36404 1.54293 0.85181 0.77397 0.80589 0.77375 1.19444 1.21765 1.22069 0.94213 0.92082 0.93511 0.90487 0.93027 0.71783 0.89434 0.87794 0.93874 0.87576 0.90898 0.89559 0.90625 0.94463 0.91723 0.93188 0.90346 0.96533 0.99212 0.80146 0.94321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.75 9.89 71.98 0.71 -4.04 16 2 C -0.04 -1.37 5.86 29.85 0.17 -1.19 16 3 C 0.07 2.22 6.39 41.97 0.27 2.49 16 4 N -0.53 -14.39 11.20 -187.59 -2.10 -16.50 16 5 C 0.23 3.58 13.01 180.33 2.35 5.93 16 6 N -0.54 -8.30 4.73 -188.05 -0.89 -9.19 16 7 H 0.44 3.07 7.34 -92.70 -0.68 2.39 16 8 C -0.09 -2.39 6.11 40.01 0.24 -2.14 16 9 C 0.56 18.08 6.32 86.47 0.55 18.62 16 10 O -0.51 -21.53 8.83 -4.31 -0.04 -21.57 16 11 N -0.60 -14.38 2.92 -798.81 -2.33 -16.72 16 12 C 0.09 1.22 5.54 86.36 0.48 1.70 16 13 C -0.13 -1.72 6.08 30.67 0.19 -1.53 16 14 C -0.11 -1.52 5.16 30.62 0.16 -1.36 16 15 C -0.11 -2.42 1.93 -10.57 -0.02 -2.44 16 16 H 0.05 1.49 6.18 -2.39 -0.01 1.48 16 17 C -0.14 -3.04 8.97 71.98 0.65 -2.40 16 18 C 0.17 4.28 2.68 45.12 0.12 4.41 16 19 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 20 C -0.12 -4.39 4.16 30.59 0.13 -4.27 16 21 C 0.19 8.63 4.22 86.38 0.36 9.00 16 22 N -0.73 -42.09 5.52 -343.46 -1.90 -43.99 16 23 C -0.23 -13.94 9.99 84.03 0.84 -13.10 16 24 H 0.06 3.75 7.83 -2.91 -0.02 3.73 16 25 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 26 N -0.97 -64.24 13.06 21.65 0.28 -63.96 16 27 Si 0.96 50.09 29.55 68.60 2.03 52.12 16 28 H -0.27 -13.28 7.11 99.48 0.71 -12.57 16 29 H -0.29 -14.81 7.11 99.48 0.71 -14.10 16 30 H -0.29 -15.16 7.11 99.48 0.71 -14.45 16 31 H 0.04 1.72 7.57 -2.38 -0.02 1.70 16 32 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.08 2.67 8.14 -2.38 -0.02 2.65 16 35 H 0.05 2.28 7.50 -2.39 -0.02 2.26 16 36 H 0.27 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.09 1.04 4.60 -2.39 -0.01 1.03 16 38 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 41 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.04 1.02 6.83 -2.39 -0.02 1.00 16 45 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.05 1.84 7.07 -2.39 -0.02 1.82 16 47 H 0.08 3.34 5.74 -20.35 -0.12 3.22 16 48 H 0.02 0.83 5.32 -2.39 -0.01 0.82 16 49 H -0.01 -0.45 6.63 -2.39 -0.02 -0.47 16 50 H 0.37 22.78 7.67 -92.71 -0.71 22.06 16 51 H 0.25 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -85.92 385.15 2.17 -83.75 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: -0.54 Total: 30.74 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 7.66 Total: 5.30 kcal Atomic # 7 Polarization: -143.41 SS G_CDS: -6.94 Total: -150.34 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.04 Total: -21.57 kcal Atomic # 14 Polarization: 50.09 SS G_CDS: 2.03 Total: 52.12 kcal Total: -85.92 2.17 -83.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565940660.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.336 kcal (2) G-P(sol) polarization free energy of solvation -85.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds