Wall clock time and date at job start Tue Mar 31 2020 18:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50693 * 109.46970 * 2 1 4 4 C 1.34671 * 126.58768 * 275.01583 * 3 2 1 5 5 N 1.34126 * 108.01954 * 179.97438 * 4 3 2 6 6 C 1.30498 * 109.25683 * 0.02562 * 5 4 3 7 7 C 1.50707 * 125.65150 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47071 * 304.97269 * 7 6 5 9 9 O 1.21283 * 119.99739 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00025 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63233 * 354.35083 * 10 8 7 12 12 C 1.53198 * 108.77396 * 126.36824 * 11 10 8 13 13 C 1.53035 * 109.31109 * 54.63605 * 12 11 10 14 14 C 1.53035 * 109.54000 * 298.63368 * 13 12 11 15 15 C 1.46926 * 120.62884 * 174.07126 * 10 8 7 16 16 H 1.09004 * 109.58672 * 113.84681 * 15 10 8 17 17 C 1.53001 * 109.59058 * 353.41774 * 15 10 8 18 18 N 1.46495 * 109.47359 * 181.82687 * 17 15 10 19 19 C 1.46495 * 120.00396 * 275.27870 * 18 17 15 20 20 C 1.36943 * 119.99648 * 95.27667 * 18 17 15 21 21 H 1.08000 * 119.99862 * 354.49328 * 20 18 17 22 22 C 1.38811 * 120.00349 * 174.48638 * 20 18 17 23 23 N 1.31628 * 119.99488 * 5.07976 * 22 20 18 24 24 Si 1.86798 * 120.00515 * 185.07846 * 22 20 18 25 25 H 1.48501 * 109.46943 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46986 * 120.00004 * 24 22 20 27 27 H 1.48497 * 109.47129 * 240.00403 * 24 22 20 28 28 N 1.35042 * 108.69925 * 359.97438 * 6 5 4 29 29 H 0.97006 * 126.39288 * 180.02562 * 28 6 5 30 30 H 1.09001 * 109.46229 * 60.00250 * 1 2 3 31 31 H 1.08991 * 109.46752 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47109 * 300.00439 * 1 2 3 33 33 H 1.08996 * 109.47109 * 239.99560 * 2 1 3 34 34 H 1.09005 * 109.46670 * 119.99938 * 2 1 3 35 35 H 1.08000 * 125.99205 * 0.02662 * 4 3 2 36 36 H 1.08998 * 109.47151 * 64.96921 * 7 6 5 37 37 H 1.08993 * 109.47080 * 184.97153 * 7 6 5 38 38 H 1.08996 * 109.58814 * 246.15884 * 11 10 8 39 39 H 1.08996 * 109.58504 * 6.58646 * 11 10 8 40 40 H 1.09003 * 109.49575 * 174.58776 * 12 11 10 41 41 H 1.08999 * 109.49592 * 294.65448 * 12 11 10 42 42 H 1.09004 * 109.46373 * 58.65624 * 13 12 11 43 43 H 1.09002 * 109.45821 * 178.62230 * 13 12 11 44 44 H 1.09005 * 109.49711 * 181.31735 * 14 13 12 45 45 H 1.08999 * 109.50012 * 301.41204 * 14 13 12 46 46 H 1.08995 * 109.46939 * 301.83097 * 17 15 10 47 47 H 1.09007 * 109.46731 * 61.83044 * 17 15 10 48 48 H 1.08995 * 109.47420 * 4.73587 * 19 18 17 49 49 H 1.09009 * 109.47020 * 124.73506 * 19 18 17 50 50 H 1.08994 * 109.47201 * 244.73168 * 19 18 17 51 51 H 0.97000 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2108 2.2091 -1.0772 5 7 2.6692 3.3956 -0.6517 6 6 2.7822 3.3723 0.6482 7 6 3.2641 4.5119 1.5086 8 6 4.6185 4.9658 1.0286 9 8 5.1413 4.4176 0.0814 10 7 5.2489 5.9810 1.6518 11 6 4.5787 6.7356 2.7196 12 6 5.4743 6.7324 3.9625 13 6 6.8592 7.2662 3.5897 14 6 7.4924 6.3550 2.5358 15 6 6.6217 6.3502 1.2806 16 1 6.6245 7.3444 0.8336 17 6 7.1737 5.3331 0.2797 18 7 8.5572 5.6789 -0.0553 19 6 8.8327 6.6611 -1.1067 20 6 9.5931 5.0841 0.6144 21 1 9.3911 4.4280 1.4482 22 6 10.9026 5.3241 0.2215 23 7 11.1546 6.1996 -0.7285 24 14 12.3071 4.4048 1.0410 25 1 11.7619 3.4833 2.0700 26 1 13.0491 3.6226 0.0200 27 1 13.2267 5.3774 1.6842 28 7 2.3947 2.1582 1.0948 29 1 2.3765 1.8637 2.0189 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 2.0177 1.9344 -2.1037 36 1 2.5589 5.3404 1.4426 37 1 3.3382 4.1794 2.5439 38 1 4.4114 7.7617 2.3923 39 1 3.6243 6.2650 2.9558 40 1 5.0336 7.3686 4.7301 41 1 5.5663 5.7147 4.3420 42 1 6.7635 8.2748 3.1874 43 1 7.4911 7.2880 4.4776 44 1 8.4882 6.7226 2.2879 45 1 7.5659 5.3409 2.9284 46 1 7.1448 4.3368 0.7210 47 1 6.5662 5.3474 -0.6253 48 1 7.8939 7.0842 -1.4638 49 1 9.4604 7.4568 -0.7052 50 1 9.3491 6.1733 -1.9334 51 1 12.0697 6.3676 -1.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566121937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:16 Heat of formation + Delta-G solvation = 60.846873 kcal Electronic energy + Delta-G solvation = -30065.621155 eV Core-core repulsion = 26195.357696 eV Total energy + Delta-G solvation = -3870.263459 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.15468 -40.10017 -37.10045 -35.45637 -34.37354 -32.86064 -32.37977 -32.13551 -30.89965 -29.86979 -27.32124 -26.08860 -25.74180 -24.28789 -23.57041 -22.46717 -21.29221 -20.92173 -20.38416 -20.10471 -18.56746 -17.44645 -16.83459 -16.46424 -15.65490 -15.30384 -15.03958 -14.73305 -14.55140 -14.32774 -14.18995 -13.90337 -13.70996 -13.59886 -13.32980 -13.11428 -13.05148 -12.77215 -12.56563 -12.43084 -12.19117 -12.04375 -11.82369 -11.48336 -11.44428 -11.13569 -10.94902 -10.70682 -10.65311 -10.51724 -10.29226 -10.17859 -9.96264 -9.95969 -9.80570 -9.74870 -9.63665 -8.74118 -8.37085 -8.21845 -8.12451 -6.70346 -5.48801 -2.90014 1.93900 2.85273 2.94079 3.16451 3.42791 3.46043 3.52313 3.53740 4.26581 4.58565 4.62005 4.68679 4.69985 4.83025 4.90050 4.99457 4.99891 5.15759 5.21085 5.29575 5.35454 5.46046 5.47972 5.55001 5.57537 5.59490 5.60936 5.73749 5.81728 5.84965 5.96036 6.01048 6.07566 6.19047 6.22263 6.25939 6.54170 6.59241 6.76540 6.78567 6.98283 7.06964 7.10812 7.29474 7.42065 7.76991 7.83572 7.86773 8.10185 8.16734 8.51539 8.62365 9.43751 10.09308 10.53007 11.50177 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.003205 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.588129 B = 8735.334980 C = 9975.757159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.046 4.046 3 C -0.028 4.028 4 C -0.019 4.019 5 N -0.455 5.455 6 C 0.222 3.778 7 C -0.055 4.055 8 C 0.513 3.487 9 O -0.495 6.495 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.133 4.133 13 C -0.122 4.122 14 C -0.118 4.118 15 C 0.125 3.875 16 H 0.061 0.939 17 C 0.164 3.836 18 N -0.612 5.612 19 C 0.171 3.829 20 C -0.231 4.231 21 H 0.071 0.929 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.902 3.098 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.293 1.293 28 N -0.564 5.564 29 H 0.414 0.586 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.166 0.834 36 H 0.114 0.886 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.055 0.945 46 H 0.049 0.951 47 H 0.069 0.931 48 H -0.011 1.011 49 H 0.046 0.954 50 H 0.034 0.966 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.835 -4.825 9.750 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.168 4.168 5 N -0.173 5.173 6 C -0.042 4.042 7 C -0.097 4.097 8 C 0.298 3.702 9 O -0.368 6.368 10 N -0.344 5.344 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.159 4.159 14 C -0.156 4.156 15 C 0.020 3.980 16 H 0.079 0.921 17 C 0.036 3.964 18 N -0.336 5.336 19 C 0.026 3.974 20 C -0.361 4.361 21 H 0.089 0.911 22 C -0.206 4.206 23 N -0.568 5.568 24 Si 0.734 3.266 25 H -0.207 1.207 26 H -0.219 1.219 27 H -0.220 1.220 28 N -0.168 5.168 29 H 0.251 0.749 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.184 0.816 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.114 0.886 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.007 0.993 49 H 0.065 0.935 50 H 0.052 0.948 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -22.180 -4.412 8.562 24.182 hybrid contribution 0.689 -1.171 1.657 2.142 sum -21.491 -5.583 10.219 24.443 Atomic orbital electron populations 1.21774 0.94584 1.01748 1.02330 1.19964 0.95841 0.89264 1.03407 1.21175 1.09446 0.96282 0.87366 1.22104 1.05634 0.90520 0.98542 1.70255 1.16190 1.23138 1.07738 1.22270 1.03998 0.86786 0.91147 1.20034 0.96953 0.95029 0.97703 1.19997 0.86203 0.80421 0.83588 1.90857 1.65039 1.55037 1.25894 1.48343 1.15984 1.33153 1.36930 1.21702 0.95358 0.96830 0.87792 1.21914 0.96755 1.01669 0.96809 1.21576 0.95366 0.99560 0.99433 1.21798 1.00569 0.99316 0.93916 1.22393 0.77921 1.00886 0.96767 0.92132 1.21390 0.84739 0.94031 0.96190 1.44340 1.00443 1.47773 1.41055 1.20992 0.93121 0.92140 0.91111 1.19353 0.85619 1.21191 1.09909 0.91110 1.24852 0.97342 0.99568 0.98817 1.70242 1.17852 1.36299 1.32454 0.86181 0.82885 0.79197 0.78363 1.20721 1.21872 1.22013 1.43064 1.51745 1.12456 1.09504 0.74921 0.92039 0.92173 0.93021 0.89430 0.91408 0.81626 0.86852 0.88095 0.91465 0.90570 0.91427 0.91833 0.92229 0.92252 0.88625 0.92600 0.93276 0.91290 0.99286 0.93508 0.94750 0.94252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.90 37.16 0.37 -0.53 16 2 C -0.05 -0.34 6.49 -27.88 -0.18 -0.52 16 3 C -0.03 -0.30 6.49 -81.61 -0.53 -0.83 16 4 C -0.02 -0.26 11.79 -17.81 -0.21 -0.47 16 5 N -0.46 -7.46 10.58 -10.81 -0.11 -7.58 16 6 C 0.22 2.97 6.96 -155.41 -1.08 1.89 16 7 C -0.06 -0.61 4.68 -29.03 -0.14 -0.74 16 8 C 0.51 8.15 7.51 -10.99 -0.08 8.07 16 9 O -0.50 -10.33 11.12 5.55 0.06 -10.27 16 10 N -0.61 -9.06 2.98 -165.47 -0.49 -9.55 16 11 C 0.11 1.10 6.35 -3.71 -0.02 1.07 16 12 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 13 C -0.12 -1.62 5.88 -26.69 -0.16 -1.78 16 14 C -0.12 -2.10 4.58 -26.84 -0.12 -2.23 16 15 C 0.13 2.34 3.20 -67.82 -0.22 2.12 16 16 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 17 C 0.16 3.80 3.55 -4.04 -0.01 3.79 16 18 N -0.61 -16.30 2.59 -181.12 -0.47 -16.77 16 19 C 0.17 4.58 8.99 59.84 0.54 5.11 16 20 C -0.23 -6.53 8.21 -15.06 -0.12 -6.65 16 21 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 22 C -0.01 -0.30 5.45 -17.43 -0.10 -0.40 16 23 N -0.92 -27.64 9.44 55.49 0.52 -27.11 16 24 Si 0.90 22.71 29.56 -169.99 -5.02 17.69 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 28 N -0.56 -5.88 6.15 -6.54 -0.04 -5.92 16 29 H 0.41 2.86 8.96 -40.82 -0.37 2.49 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.17 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.11 0.99 7.71 -51.93 -0.40 0.59 16 37 H 0.10 0.76 7.92 -51.93 -0.41 0.34 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.54 5.93 -51.93 -0.31 0.24 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.10 2.05 6.96 -51.93 -0.36 1.68 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.22 7.10 -51.93 -0.37 0.85 16 47 H 0.07 1.73 6.16 -51.93 -0.32 1.41 16 48 H -0.01 -0.28 7.90 -51.93 -0.41 -0.69 16 49 H 0.05 1.32 6.92 -51.92 -0.36 0.96 16 50 H 0.03 1.00 7.16 -51.93 -0.37 0.63 16 51 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -36.09 394.49 -10.56 -46.65 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.72 Total: 0.55 kcal Atomic # 6 Polarization: 8.60 SS G_CDS: -2.23 Total: 6.37 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.59 Total: -66.94 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.06 Total: -10.27 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.09 -10.56 -46.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566121937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.497 kcal (2) G-P(sol) polarization free energy of solvation -36.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds