Wall clock time and date at job start Tue Mar 31 2020 18:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50693 * 109.46970 * 2 1 4 4 C 1.34671 * 126.58768 * 275.01583 * 3 2 1 5 5 N 1.34126 * 108.01954 * 179.97438 * 4 3 2 6 6 C 1.30498 * 109.25683 * 0.02562 * 5 4 3 7 7 C 1.50707 * 125.65150 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.47071 * 304.97269 * 7 6 5 9 9 O 1.21283 * 119.99739 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00025 * 179.97438 * 8 7 6 11 11 C 1.46926 * 120.63233 * 354.35083 * 10 8 7 12 12 C 1.53198 * 108.77396 * 126.36824 * 11 10 8 13 13 C 1.53035 * 109.31109 * 54.63605 * 12 11 10 14 14 C 1.53035 * 109.54000 * 298.63368 * 13 12 11 15 15 C 1.46926 * 120.62884 * 174.07126 * 10 8 7 16 16 H 1.09004 * 109.58672 * 113.84681 * 15 10 8 17 17 C 1.53001 * 109.59058 * 353.41774 * 15 10 8 18 18 N 1.46495 * 109.47359 * 181.82687 * 17 15 10 19 19 C 1.46495 * 120.00396 * 275.27870 * 18 17 15 20 20 C 1.36943 * 119.99648 * 95.27667 * 18 17 15 21 21 H 1.08000 * 119.99862 * 354.49328 * 20 18 17 22 22 C 1.38811 * 120.00349 * 174.48638 * 20 18 17 23 23 N 1.31628 * 119.99488 * 5.07976 * 22 20 18 24 24 Si 1.86798 * 120.00515 * 185.07846 * 22 20 18 25 25 H 1.48501 * 109.46943 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46986 * 120.00004 * 24 22 20 27 27 H 1.48497 * 109.47129 * 240.00403 * 24 22 20 28 28 N 1.35042 * 108.69925 * 359.97438 * 6 5 4 29 29 H 0.97006 * 126.39288 * 180.02562 * 28 6 5 30 30 H 1.09001 * 109.46229 * 60.00250 * 1 2 3 31 31 H 1.08991 * 109.46752 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47109 * 300.00439 * 1 2 3 33 33 H 1.08996 * 109.47109 * 239.99560 * 2 1 3 34 34 H 1.09005 * 109.46670 * 119.99938 * 2 1 3 35 35 H 1.08000 * 125.99205 * 0.02662 * 4 3 2 36 36 H 1.08998 * 109.47151 * 64.96921 * 7 6 5 37 37 H 1.08993 * 109.47080 * 184.97153 * 7 6 5 38 38 H 1.08996 * 109.58814 * 246.15884 * 11 10 8 39 39 H 1.08996 * 109.58504 * 6.58646 * 11 10 8 40 40 H 1.09003 * 109.49575 * 174.58776 * 12 11 10 41 41 H 1.08999 * 109.49592 * 294.65448 * 12 11 10 42 42 H 1.09004 * 109.46373 * 58.65624 * 13 12 11 43 43 H 1.09002 * 109.45821 * 178.62230 * 13 12 11 44 44 H 1.09005 * 109.49711 * 181.31735 * 14 13 12 45 45 H 1.08999 * 109.50012 * 301.41204 * 14 13 12 46 46 H 1.08995 * 109.46939 * 301.83097 * 17 15 10 47 47 H 1.09007 * 109.46731 * 61.83044 * 17 15 10 48 48 H 1.08995 * 109.47420 * 4.73587 * 19 18 17 49 49 H 1.09009 * 109.47020 * 124.73506 * 19 18 17 50 50 H 1.08994 * 109.47201 * 244.73168 * 19 18 17 51 51 H 0.97000 * 119.99921 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2108 2.2091 -1.0772 5 7 2.6692 3.3956 -0.6517 6 6 2.7822 3.3723 0.6482 7 6 3.2641 4.5119 1.5086 8 6 4.6185 4.9658 1.0286 9 8 5.1413 4.4176 0.0814 10 7 5.2489 5.9810 1.6518 11 6 4.5787 6.7356 2.7196 12 6 5.4743 6.7324 3.9625 13 6 6.8592 7.2662 3.5897 14 6 7.4924 6.3550 2.5358 15 6 6.6217 6.3502 1.2806 16 1 6.6245 7.3444 0.8336 17 6 7.1737 5.3331 0.2797 18 7 8.5572 5.6789 -0.0553 19 6 8.8327 6.6611 -1.1067 20 6 9.5931 5.0841 0.6144 21 1 9.3911 4.4280 1.4482 22 6 10.9026 5.3241 0.2215 23 7 11.1546 6.1996 -0.7285 24 14 12.3071 4.4048 1.0410 25 1 11.7619 3.4833 2.0700 26 1 13.0491 3.6226 0.0200 27 1 13.2267 5.3774 1.6842 28 7 2.3947 2.1582 1.0948 29 1 2.3765 1.8637 2.0189 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3632 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5139 0.8901 35 1 2.0177 1.9344 -2.1037 36 1 2.5589 5.3404 1.4426 37 1 3.3382 4.1794 2.5439 38 1 4.4114 7.7617 2.3923 39 1 3.6243 6.2650 2.9558 40 1 5.0336 7.3686 4.7301 41 1 5.5663 5.7147 4.3420 42 1 6.7635 8.2748 3.1874 43 1 7.4911 7.2880 4.4776 44 1 8.4882 6.7226 2.2879 45 1 7.5659 5.3409 2.9284 46 1 7.1448 4.3368 0.7210 47 1 6.5662 5.3474 -0.6253 48 1 7.8939 7.0842 -1.4638 49 1 9.4604 7.4568 -0.7052 50 1 9.3491 6.1733 -1.9334 51 1 12.0697 6.3676 -1.0028 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566121937.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:15 Heat of formation + Delta-G solvation = 37.306109 kcal Electronic energy + Delta-G solvation = -30066.641959 eV Core-core repulsion = 26195.357696 eV Total energy + Delta-G solvation = -3871.284263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.21 seconds Orbital eigenvalues (eV) -43.07015 -41.37967 -38.42547 -37.34092 -35.10924 -34.16305 -33.68246 -33.33613 -32.18631 -31.32715 -28.31355 -28.05928 -27.50259 -25.53210 -24.32951 -23.98116 -22.51573 -21.96215 -21.82211 -21.23619 -19.75391 -18.78794 -18.33987 -17.82440 -17.14880 -16.62039 -16.28582 -15.94796 -15.53010 -15.41013 -15.32362 -15.10094 -15.06620 -14.74282 -14.59681 -14.47399 -14.39843 -13.99795 -13.84289 -13.67767 -13.23737 -13.19946 -12.97151 -12.91998 -12.73487 -12.60966 -12.42323 -12.14527 -12.07115 -12.01062 -11.96832 -11.83314 -11.69307 -11.50416 -11.31820 -10.92542 -10.76428 -10.65887 -10.14911 -9.43000 -9.13676 -8.87274 -7.71596 -5.15594 1.04517 1.42461 1.44835 1.54303 1.76998 1.88224 2.23013 2.37251 2.53325 3.34333 3.37652 3.68637 3.85638 3.93007 3.98762 4.03070 4.08082 4.11530 4.17173 4.23972 4.39424 4.42747 4.46592 4.50348 4.59664 4.67452 4.74015 4.75415 4.78042 4.81512 4.90323 4.97917 5.07795 5.08860 5.09711 5.19467 5.21267 5.34754 5.36471 5.40224 5.42912 5.54201 5.55512 5.59394 5.80239 5.82960 5.84688 6.31482 6.51985 6.64647 7.19165 7.23929 7.38012 7.92963 8.33628 9.27008 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.003205 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.588129 B = 8735.334980 C = 9975.757159 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.009 4.009 4 C -0.062 4.062 5 N -0.510 5.510 6 C 0.207 3.793 7 C -0.042 4.042 8 C 0.503 3.497 9 O -0.557 6.557 10 N -0.606 5.606 11 C 0.099 3.901 12 C -0.125 4.125 13 C -0.118 4.118 14 C -0.108 4.108 15 C 0.139 3.861 16 H 0.050 0.950 17 C 0.178 3.822 18 N -0.627 5.627 19 C 0.191 3.809 20 C -0.234 4.234 21 H 0.071 0.929 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.970 3.030 25 H -0.269 1.269 26 H -0.296 1.296 27 H -0.288 1.288 28 N -0.551 5.551 29 H 0.432 0.568 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.168 0.832 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.041 0.959 46 H 0.027 0.973 47 H 0.047 0.953 48 H 0.008 0.992 49 H 0.028 0.972 50 H 0.003 0.997 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.461 -5.454 13.458 29.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.083 4.083 3 C -0.125 4.125 4 C -0.210 4.210 5 N -0.229 5.229 6 C -0.058 4.058 7 C -0.083 4.083 8 C 0.291 3.709 9 O -0.434 6.434 10 N -0.341 5.341 11 C -0.022 4.022 12 C -0.163 4.163 13 C -0.155 4.155 14 C -0.146 4.146 15 C 0.033 3.967 16 H 0.068 0.932 17 C 0.053 3.947 18 N -0.353 5.353 19 C 0.046 3.954 20 C -0.364 4.364 21 H 0.089 0.911 22 C -0.260 4.260 23 N -0.600 5.600 24 Si 0.799 3.201 25 H -0.194 1.194 26 H -0.223 1.223 27 H -0.215 1.215 28 N -0.156 5.156 29 H 0.273 0.727 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.186 0.814 36 H 0.162 0.838 37 H 0.165 0.835 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.026 0.974 49 H 0.047 0.953 50 H 0.022 0.978 51 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -24.878 -5.037 12.348 28.226 hybrid contribution 1.426 -1.015 0.459 1.810 sum -23.451 -6.052 12.807 27.397 Atomic orbital electron populations 1.21729 0.93359 1.02819 1.02003 1.20109 0.96747 0.86986 1.04473 1.21637 1.07061 0.97185 0.86655 1.22373 1.07789 0.90999 0.99840 1.70155 1.17827 1.24973 1.09942 1.22608 1.04197 0.88208 0.90788 1.20114 0.93688 0.95348 0.99197 1.20929 0.87691 0.79625 0.82644 1.90838 1.66973 1.56960 1.28661 1.48349 1.14296 1.33463 1.37986 1.22140 0.96727 0.97310 0.86024 1.21904 0.94397 1.02464 0.97572 1.21547 0.97515 0.98537 0.97921 1.21596 0.98652 0.99474 0.94912 1.21709 0.80790 0.98257 0.95944 0.93229 1.21204 0.82832 0.94262 0.96439 1.44553 1.01731 1.47833 1.41139 1.20625 0.93236 0.91357 0.90133 1.19555 0.86260 1.20858 1.09688 0.91131 1.25652 0.99741 1.00708 0.99901 1.70437 1.17946 1.37645 1.33947 0.85132 0.79548 0.77985 0.77457 1.19358 1.22295 1.21514 1.43000 1.50728 1.11510 1.10396 0.72700 0.92911 0.90394 0.92827 0.89039 0.89657 0.81432 0.83838 0.83506 0.90371 0.86029 0.87565 0.91582 0.91933 0.91411 0.92989 0.94000 0.95453 0.93510 0.97357 0.95341 0.97849 0.94730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.90 71.99 0.71 -0.70 16 2 C -0.04 -0.56 6.49 29.85 0.19 -0.37 16 3 C -0.01 -0.18 6.49 40.95 0.27 0.09 16 4 C -0.06 -1.75 11.79 83.52 0.98 -0.76 16 5 N -0.51 -17.01 10.58 -188.13 -1.99 -19.00 16 6 C 0.21 5.22 6.96 138.13 0.96 6.18 16 7 C -0.04 -0.79 4.68 29.10 0.14 -0.65 16 8 C 0.50 15.47 7.51 87.66 0.66 16.13 16 9 O -0.56 -24.08 11.12 -3.04 -0.03 -24.11 16 10 N -0.61 -17.05 2.98 -795.83 -2.37 -19.42 16 11 C 0.10 1.59 6.35 86.36 0.55 2.13 16 12 C -0.13 -1.98 6.08 30.67 0.19 -1.80 16 13 C -0.12 -2.87 5.88 30.62 0.18 -2.69 16 14 C -0.11 -3.88 4.58 30.53 0.14 -3.74 16 15 C 0.14 5.28 3.20 44.83 0.14 5.42 16 16 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 17 C 0.18 8.71 3.55 86.38 0.31 9.02 16 18 N -0.63 -35.15 2.59 -726.95 -1.88 -37.03 16 19 C 0.19 10.83 8.99 127.77 1.15 11.98 16 20 C -0.23 -13.71 8.21 84.03 0.69 -13.02 16 21 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 22 C -0.07 -4.03 5.45 84.86 0.46 -3.57 16 23 N -0.95 -59.31 9.44 21.65 0.20 -59.10 16 24 Si 0.97 47.80 29.56 68.60 2.03 49.83 16 25 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 N -0.55 -10.28 6.15 -174.61 -1.07 -11.35 16 29 H 0.43 4.48 8.96 -92.70 -0.83 3.65 16 30 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.17 4.21 8.06 -2.91 -0.02 4.18 16 36 H 0.14 1.83 7.71 -2.39 -0.02 1.82 16 37 H 0.15 1.35 7.92 -2.39 -0.02 1.34 16 38 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.12 0.92 5.93 -2.39 -0.01 0.90 16 40 H 0.11 1.00 8.14 -2.39 -0.02 0.99 16 41 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.05 2.31 6.96 -2.38 -0.02 2.30 16 45 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.03 1.43 7.10 -2.39 -0.02 1.41 16 47 H 0.05 2.50 6.16 -2.38 -0.01 2.48 16 48 H 0.01 0.41 7.90 -2.39 -0.02 0.39 16 49 H 0.03 1.69 6.92 -2.38 -0.02 1.67 16 50 H 0.00 0.19 7.16 -2.39 -0.02 0.17 16 51 H 0.24 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -86.77 394.49 2.69 -84.09 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.09 Total: 12.45 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 7.72 Total: 23.66 kcal Atomic # 7 Polarization: -138.80 SS G_CDS: -7.11 Total: -145.91 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.03 Total: -24.11 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -86.77 2.69 -84.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566121937.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.394 kcal (2) G-P(sol) polarization free energy of solvation -86.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.22 seconds