Wall clock time and date at job start Tue Mar 31 2020 19:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46814 * 2 1 4 4 C 1.50699 * 109.46917 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.98787 * 269.99601 * 4 3 2 6 6 N 1.39938 * 108.89506 * 180.02562 * 5 4 3 7 7 H 0.96997 * 125.75316 * 180.02562 * 6 5 4 8 8 C 1.34266 * 108.49136 * 359.75155 * 6 5 4 9 9 C 1.38040 * 107.41589 * 0.39485 * 8 6 5 10 10 C 1.47427 * 126.40888 * 179.87112 * 9 8 6 11 11 O 1.21609 * 119.99491 * 179.68982 * 10 9 8 12 12 N 1.34770 * 120.00424 * 359.68698 * 10 9 8 13 13 C 1.46504 * 119.99978 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46979 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47040 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46895 * 174.93436 * 15 14 13 17 17 H 1.09007 * 109.87324 * 306.13617 * 16 15 14 18 18 C 1.54321 * 110.01252 * 67.23881 * 16 15 14 19 19 C 1.55149 * 102.94179 * 141.68277 * 18 16 15 20 20 C 1.54908 * 101.58153 * 324.49640 * 19 18 16 21 21 N 1.47023 * 109.87930 * 185.12435 * 16 15 14 22 22 C 1.36931 * 125.65028 * 61.45423 * 21 16 15 23 23 H 1.08002 * 120.00168 * 14.67814 * 22 21 16 24 24 C 1.38815 * 119.99820 * 194.68515 * 22 21 16 25 25 N 1.31619 * 120.00482 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99755 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47358 * 89.99886 * 26 24 22 28 28 H 1.48503 * 109.46945 * 209.99344 * 26 24 22 29 29 H 1.48497 * 109.47433 * 329.99444 * 26 24 22 30 30 H 1.08999 * 109.46937 * 299.99652 * 1 2 3 31 31 H 1.08997 * 109.47565 * 59.99966 * 1 2 3 32 32 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46937 * 240.00348 * 2 1 3 34 34 H 1.08997 * 109.47565 * 120.00033 * 2 1 3 35 35 H 1.08991 * 109.47434 * 60.00401 * 3 2 1 36 36 H 1.09005 * 109.46669 * 299.99877 * 3 2 1 37 37 H 1.08003 * 126.28956 * 180.24408 * 8 6 5 38 38 H 0.96998 * 120.00251 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.46704 * 60.00456 * 13 12 10 40 40 H 1.08991 * 109.47259 * 300.00065 * 13 12 10 41 41 H 1.08996 * 109.47046 * 60.00171 * 14 13 12 42 42 H 1.09001 * 109.47140 * 300.00302 * 14 13 12 43 43 H 1.09003 * 109.46886 * 54.93221 * 15 14 13 44 44 H 1.08996 * 109.46795 * 294.93480 * 15 14 13 45 45 H 1.08995 * 110.72025 * 23.31644 * 18 16 15 46 46 H 1.09007 * 110.71831 * 260.04719 * 18 16 15 47 47 H 1.09007 * 111.00405 * 206.42347 * 19 18 16 48 48 H 1.08997 * 111.01050 * 82.57372 * 19 18 16 49 49 H 1.09003 * 110.36843 * 155.85490 * 20 19 18 50 50 H 1.09001 * 110.36413 * 278.06156 * 20 19 18 51 51 H 0.96995 * 120.00670 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3139 1.4426 1.0545 6 7 5.6513 1.4432 0.6427 7 1 6.4246 1.4429 1.2282 8 6 5.6835 1.4382 -0.6996 9 6 4.3767 1.4434 -1.1443 10 6 3.9305 1.4433 -2.5494 11 8 2.7427 1.4425 -2.8100 12 7 4.8389 1.4441 -3.5449 13 6 4.3954 1.4434 -4.9412 14 6 5.6158 1.4451 -5.8640 15 6 5.1527 1.4451 -7.3222 16 6 6.3676 1.5742 -8.2432 17 1 6.9550 2.4481 -7.9613 18 6 7.2387 0.3038 -8.1495 19 6 7.7042 0.0929 -9.6144 20 6 6.4568 0.5572 -10.4070 21 7 5.9253 1.6982 -9.6398 22 6 5.1479 2.7063 -10.1442 23 1 5.0027 3.6127 -9.5751 24 6 4.5463 2.5632 -11.3870 25 7 4.7234 1.4589 -12.0808 26 14 3.4851 3.9381 -12.0748 27 1 4.3305 4.8667 -12.8674 28 1 2.4315 3.3608 -12.9477 29 1 2.8496 4.6798 -10.9562 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9564 0.8899 36 1 1.6765 1.9564 -0.8901 37 1 6.5691 1.4336 -1.3177 38 1 5.7863 1.4443 -3.3371 39 1 3.7948 2.3328 -5.1320 40 1 3.7966 0.5528 -5.1318 41 1 6.2168 0.5560 -5.6732 42 1 6.2143 2.3360 -5.6732 43 1 4.4789 2.2855 -7.4894 44 1 4.6309 0.5127 -7.5376 45 1 6.6470 -0.5451 -7.8069 46 1 8.0932 0.4696 -7.4933 47 1 7.9214 -0.9576 -9.8080 48 1 8.5676 0.7174 -9.8438 49 1 6.7412 0.8741 -11.4104 50 1 5.7198 -0.2443 -10.4579 51 1 4.3034 1.3590 -12.9494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567254417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:55 Heat of formation + Delta-G solvation = 29.845897 kcal Electronic energy + Delta-G solvation = -28269.766847 eV Core-core repulsion = 24398.159084 eV Total energy + Delta-G solvation = -3871.607762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.75501 -39.20151 -37.80375 -35.72795 -35.13559 -32.98271 -32.21416 -31.88884 -30.66903 -29.34390 -27.95841 -27.27574 -24.92336 -24.20049 -22.99778 -22.13729 -21.52586 -20.53564 -20.14113 -19.77076 -19.13045 -18.66530 -16.75300 -16.53904 -15.79150 -15.64630 -15.32653 -15.15961 -14.96418 -14.66519 -14.35371 -14.03758 -13.92520 -13.74442 -13.49567 -13.21674 -12.81261 -12.29076 -12.18203 -12.01513 -11.90292 -11.74162 -11.67163 -11.44696 -11.42992 -11.25467 -11.00628 -10.78910 -10.78093 -10.69024 -10.52978 -10.06590 -9.98216 -9.91187 -9.83062 -9.74315 -9.59933 -9.57082 -9.24719 -8.93468 -8.53822 -6.73477 -5.70997 -3.05969 1.16414 1.88122 2.32122 3.20966 3.34387 3.41712 3.47653 3.49139 4.12865 4.26433 4.52147 4.74973 4.89507 4.93946 5.03389 5.05977 5.16207 5.22235 5.30440 5.41633 5.47506 5.56693 5.62761 5.64159 5.64872 5.73372 5.76270 5.85946 5.88453 6.01500 6.08187 6.09347 6.13881 6.15816 6.23389 6.29762 6.36998 6.44802 6.47619 6.59300 6.70514 6.72908 6.75000 6.99486 7.17350 7.20548 7.51659 7.57901 7.66997 7.83935 8.25273 8.33396 9.24431 9.86075 10.55449 11.41440 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.002114 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.233672 B =13244.865272 C =14333.696531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.046 4.046 4 C 0.139 3.861 5 N -0.299 5.299 6 N -0.463 5.463 7 H 0.444 0.556 8 C 0.103 3.897 9 C -0.283 4.283 10 C 0.588 3.412 11 O -0.537 6.537 12 N -0.728 5.728 13 C 0.120 3.880 14 C -0.127 4.127 15 C -0.122 4.122 16 C 0.162 3.838 17 H 0.030 0.970 18 C -0.124 4.124 19 C -0.151 4.151 20 C 0.173 3.827 21 N -0.596 5.596 22 C -0.226 4.226 23 H 0.074 0.926 24 C -0.005 4.005 25 N -0.918 5.918 26 Si 0.908 3.092 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.280 1.280 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.103 0.897 37 H 0.186 0.814 38 H 0.394 0.606 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.054 0.946 47 H 0.055 0.945 48 H 0.056 0.944 49 H 0.068 0.932 50 H 0.024 0.976 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -3.041 25.225 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.086 4.086 4 C -0.029 4.029 5 N -0.121 5.121 6 N -0.167 5.167 7 H 0.288 0.712 8 C -0.050 4.050 9 C -0.298 4.298 10 C 0.375 3.625 11 O -0.415 6.415 12 N -0.379 5.379 13 C -0.003 4.003 14 C -0.165 4.165 15 C -0.162 4.162 16 C 0.055 3.945 17 H 0.047 0.953 18 C -0.162 4.162 19 C -0.189 4.189 20 C 0.048 3.952 21 N -0.320 5.320 22 C -0.354 4.354 23 H 0.092 0.908 24 C -0.202 4.202 25 N -0.565 5.565 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.217 1.217 29 H -0.206 1.206 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.203 0.797 38 H 0.228 0.772 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.075 0.925 49 H 0.086 0.914 50 H 0.042 0.958 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.039 -2.988 26.066 26.412 hybrid contribution 0.532 0.669 -0.902 1.243 sum 3.571 -2.318 25.164 25.522 Atomic orbital electron populations 1.21739 0.95256 1.01714 1.02015 1.21362 0.96078 0.95324 1.02109 1.20253 0.85203 0.98808 1.04287 1.22500 0.97155 0.94612 0.88635 1.77186 0.86172 1.26327 1.22457 1.46115 1.07905 1.57190 1.05455 0.71186 1.23170 0.99036 0.97083 0.85737 1.20381 0.92072 1.22566 0.94826 1.17239 0.85770 0.76029 0.83421 1.90765 1.16198 1.50315 1.84198 1.45930 1.09253 1.76056 1.06660 1.21490 0.97630 1.02609 0.78538 1.21832 0.96635 1.01899 0.96158 1.22019 1.00325 1.02544 0.91306 1.20927 0.92486 0.94640 0.86467 0.95251 1.22584 0.98435 0.98128 0.97033 1.23012 1.00201 0.99550 0.96170 1.21396 0.89637 0.89218 0.94963 1.44538 1.59344 1.26058 1.02102 1.18959 1.21377 0.93979 1.01135 0.90818 1.24897 0.99825 0.97244 0.98253 1.69935 1.47462 1.25627 1.13490 0.86184 0.80142 0.81073 0.78778 1.21671 1.21686 1.20583 0.92865 0.92128 0.92702 0.91439 0.92389 0.90622 0.87884 0.79706 0.77232 0.91324 0.91415 0.91819 0.91837 0.91577 0.92236 0.92044 0.92720 0.92593 0.92536 0.91351 0.95836 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.11 -1.08 5.92 -26.73 -0.16 -1.24 16 3 C -0.05 -0.48 5.25 -27.88 -0.15 -0.63 16 4 C 0.14 1.54 6.52 -82.02 -0.53 1.01 16 5 N -0.30 -3.09 12.63 33.90 0.43 -2.66 16 6 N -0.46 -3.04 7.29 30.85 0.22 -2.82 16 7 H 0.44 1.28 8.96 -182.72 -1.64 -0.36 16 8 C 0.10 0.66 11.52 -16.56 -0.19 0.47 16 9 C -0.28 -2.93 6.13 -105.07 -0.64 -3.58 16 10 C 0.59 7.34 7.81 -12.52 -0.10 7.24 16 11 O -0.54 -8.57 14.92 5.27 0.08 -8.50 16 12 N -0.73 -7.56 5.54 -61.38 -0.34 -7.90 16 13 C 0.12 1.52 5.67 -4.04 -0.02 1.50 16 14 C -0.13 -1.57 5.10 -26.73 -0.14 -1.71 16 15 C -0.12 -2.11 4.72 -26.73 -0.13 -2.23 16 16 C 0.16 3.17 3.16 -66.95 -0.21 2.96 16 17 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 18 C -0.12 -2.05 5.71 -24.90 -0.14 -2.20 16 19 C -0.15 -2.80 7.08 -24.59 -0.17 -2.97 16 20 C 0.17 4.16 5.41 -2.53 -0.01 4.15 16 21 N -0.60 -14.83 3.13 -162.58 -0.51 -15.34 16 22 C -0.23 -6.18 9.70 -15.06 -0.15 -6.33 16 23 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 24 C -0.01 -0.15 5.47 -17.43 -0.10 -0.25 16 25 N -0.92 -26.92 10.58 55.49 0.59 -26.33 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 29 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.10 1.23 6.55 -51.93 -0.34 0.89 16 37 H 0.19 0.39 7.46 -52.48 -0.39 0.00 16 38 H 0.39 2.77 7.40 -40.82 -0.30 2.46 16 39 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 1.28 7.84 -51.93 -0.41 0.87 16 44 H 0.06 1.10 8.03 -51.93 -0.42 0.69 16 45 H 0.06 0.98 7.78 -51.93 -0.40 0.57 16 46 H 0.05 0.76 8.14 -51.92 -0.42 0.34 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.07 1.84 6.93 -51.93 -0.36 1.48 16 50 H 0.02 0.62 8.06 -51.93 -0.42 0.20 16 51 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 408.68 15.07 6.16 6.16 Total: -1.00 -34.36 408.68 -10.98 -45.35 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -10.12 Total: -0.31 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -2.47 Total: -4.72 kcal Atomic # 7 Polarization: -55.44 SS G_CDS: 0.39 Total: -55.05 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: 0.08 Total: -8.50 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.36 -10.98 -45.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567254417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.191 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds