Wall clock time and date at job start Tue Mar 31 2020 19:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46814 * 2 1 4 4 C 1.50699 * 109.46917 * 180.02562 * 3 2 1 5 5 N 1.30448 * 125.98787 * 269.99601 * 4 3 2 6 6 N 1.39938 * 108.89506 * 180.02562 * 5 4 3 7 7 H 0.96997 * 125.75316 * 180.02562 * 6 5 4 8 8 C 1.34266 * 108.49136 * 359.75155 * 6 5 4 9 9 C 1.38040 * 107.41589 * 0.39485 * 8 6 5 10 10 C 1.47427 * 126.40888 * 179.87112 * 9 8 6 11 11 O 1.21609 * 119.99491 * 179.68982 * 10 9 8 12 12 N 1.34770 * 120.00424 * 359.68698 * 10 9 8 13 13 C 1.46504 * 119.99978 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46979 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47040 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.46895 * 174.93436 * 15 14 13 17 17 H 1.09007 * 109.87324 * 306.13617 * 16 15 14 18 18 C 1.54321 * 110.01252 * 67.23881 * 16 15 14 19 19 C 1.55149 * 102.94179 * 141.68277 * 18 16 15 20 20 C 1.54908 * 101.58153 * 324.49640 * 19 18 16 21 21 N 1.47023 * 109.87930 * 185.12435 * 16 15 14 22 22 C 1.36931 * 125.65028 * 61.45423 * 21 16 15 23 23 H 1.08002 * 120.00168 * 14.67814 * 22 21 16 24 24 C 1.38815 * 119.99820 * 194.68515 * 22 21 16 25 25 N 1.31619 * 120.00482 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99755 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.47358 * 89.99886 * 26 24 22 28 28 H 1.48503 * 109.46945 * 209.99344 * 26 24 22 29 29 H 1.48497 * 109.47433 * 329.99444 * 26 24 22 30 30 H 1.08999 * 109.46937 * 299.99652 * 1 2 3 31 31 H 1.08997 * 109.47565 * 59.99966 * 1 2 3 32 32 H 1.09001 * 109.47169 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46937 * 240.00348 * 2 1 3 34 34 H 1.08997 * 109.47565 * 120.00033 * 2 1 3 35 35 H 1.08991 * 109.47434 * 60.00401 * 3 2 1 36 36 H 1.09005 * 109.46669 * 299.99877 * 3 2 1 37 37 H 1.08003 * 126.28956 * 180.24408 * 8 6 5 38 38 H 0.96998 * 120.00251 * 0.02562 * 12 10 9 39 39 H 1.08998 * 109.46704 * 60.00456 * 13 12 10 40 40 H 1.08991 * 109.47259 * 300.00065 * 13 12 10 41 41 H 1.08996 * 109.47046 * 60.00171 * 14 13 12 42 42 H 1.09001 * 109.47140 * 300.00302 * 14 13 12 43 43 H 1.09003 * 109.46886 * 54.93221 * 15 14 13 44 44 H 1.08996 * 109.46795 * 294.93480 * 15 14 13 45 45 H 1.08995 * 110.72025 * 23.31644 * 18 16 15 46 46 H 1.09007 * 110.71831 * 260.04719 * 18 16 15 47 47 H 1.09007 * 111.00405 * 206.42347 * 19 18 16 48 48 H 1.08997 * 111.01050 * 82.57372 * 19 18 16 49 49 H 1.09003 * 110.36843 * 155.85490 * 20 19 18 50 50 H 1.09001 * 110.36413 * 278.06156 * 20 19 18 51 51 H 0.96995 * 120.00670 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5469 1.4426 -0.0006 5 7 4.3139 1.4426 1.0545 6 7 5.6513 1.4432 0.6427 7 1 6.4246 1.4429 1.2282 8 6 5.6835 1.4382 -0.6996 9 6 4.3767 1.4434 -1.1443 10 6 3.9305 1.4433 -2.5494 11 8 2.7427 1.4425 -2.8100 12 7 4.8389 1.4441 -3.5449 13 6 4.3954 1.4434 -4.9412 14 6 5.6158 1.4451 -5.8640 15 6 5.1527 1.4451 -7.3222 16 6 6.3676 1.5742 -8.2432 17 1 6.9550 2.4481 -7.9613 18 6 7.2387 0.3038 -8.1495 19 6 7.7042 0.0929 -9.6144 20 6 6.4568 0.5572 -10.4070 21 7 5.9253 1.6982 -9.6398 22 6 5.1479 2.7063 -10.1442 23 1 5.0027 3.6127 -9.5751 24 6 4.5463 2.5632 -11.3870 25 7 4.7234 1.4589 -12.0808 26 14 3.4851 3.9381 -12.0748 27 1 4.3305 4.8667 -12.8674 28 1 2.4315 3.3608 -12.9477 29 1 2.8496 4.6798 -10.9562 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9564 0.8899 36 1 1.6765 1.9564 -0.8901 37 1 6.5691 1.4336 -1.3177 38 1 5.7863 1.4443 -3.3371 39 1 3.7948 2.3328 -5.1320 40 1 3.7966 0.5528 -5.1318 41 1 6.2168 0.5560 -5.6732 42 1 6.2143 2.3360 -5.6732 43 1 4.4789 2.2855 -7.4894 44 1 4.6309 0.5127 -7.5376 45 1 6.6470 -0.5451 -7.8069 46 1 8.0932 0.4696 -7.4933 47 1 7.9214 -0.9576 -9.8080 48 1 8.5676 0.7174 -9.8438 49 1 6.7412 0.8741 -11.4104 50 1 5.7198 -0.2443 -10.4579 51 1 4.3034 1.3590 -12.9494 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567254417.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:18:53 Heat of formation + Delta-G solvation = 6.866114 kcal Electronic energy + Delta-G solvation = -28270.763325 eV Core-core repulsion = 24398.159084 eV Total energy + Delta-G solvation = -3872.604240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.42699 -40.16526 -39.39238 -36.71292 -36.04717 -34.65086 -33.68062 -32.57122 -31.55380 -31.14078 -29.25812 -28.04228 -26.61917 -25.70921 -23.87462 -22.92263 -22.65241 -21.84262 -21.39341 -20.75095 -20.48163 -19.35383 -18.65879 -17.41251 -16.94230 -16.73906 -16.58987 -16.10565 -15.98685 -15.91210 -15.63853 -15.36081 -15.07475 -14.80473 -14.30709 -14.19795 -13.95196 -13.84114 -13.66768 -13.52620 -13.06895 -12.96668 -12.90671 -12.71135 -12.60993 -12.46210 -12.20237 -12.17925 -11.99191 -11.97390 -11.77276 -11.65213 -11.57210 -11.50835 -11.27757 -11.11781 -10.80769 -10.62674 -10.51823 -10.13714 -9.71185 -8.74762 -7.83623 -5.18865 0.57133 1.08454 1.45168 1.46689 1.55124 1.81723 2.32479 2.48150 2.51613 3.35168 3.45461 3.73369 3.75422 3.99921 4.06185 4.11311 4.15403 4.19897 4.23977 4.31211 4.36578 4.38344 4.46917 4.50280 4.59577 4.68092 4.82993 4.86359 4.86795 4.88261 4.93454 4.98690 5.04893 5.09477 5.11757 5.19380 5.27648 5.32349 5.39731 5.40561 5.44318 5.51855 5.54478 5.58812 5.70600 5.75537 5.82812 6.28767 6.30284 6.49833 6.74651 7.15297 7.39421 7.85489 8.52443 9.28004 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014473 B = 0.002114 C = 0.001953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.233672 B =13244.865272 C =14333.696531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.103 4.103 3 C -0.045 4.045 4 C 0.122 3.878 5 N -0.324 5.324 6 N -0.446 5.446 7 H 0.462 0.538 8 C 0.139 3.861 9 C -0.320 4.320 10 C 0.586 3.414 11 O -0.584 6.584 12 N -0.711 5.711 13 C 0.128 3.872 14 C -0.106 4.106 15 C -0.113 4.113 16 C 0.151 3.849 17 H 0.037 0.963 18 C -0.110 4.110 19 C -0.138 4.138 20 C 0.174 3.826 21 N -0.619 5.619 22 C -0.229 4.229 23 H 0.076 0.924 24 C -0.066 4.066 25 N -0.950 5.950 26 Si 0.969 3.031 27 H -0.285 1.285 28 H -0.297 1.297 29 H -0.270 1.270 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.238 0.762 38 H 0.415 0.585 39 H 0.046 0.954 40 H 0.050 0.950 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.035 0.965 44 H 0.040 0.960 45 H 0.070 0.930 46 H 0.099 0.901 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.028 0.972 50 H -0.010 1.010 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.956 -3.020 28.015 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.142 4.142 3 C -0.084 4.084 4 C -0.045 4.045 5 N -0.147 5.147 6 N -0.152 5.152 7 H 0.310 0.690 8 C -0.015 4.015 9 C -0.335 4.335 10 C 0.375 3.625 11 O -0.465 6.465 12 N -0.364 5.364 13 C 0.004 3.996 14 C -0.144 4.144 15 C -0.153 4.153 16 C 0.046 3.954 17 H 0.055 0.945 18 C -0.148 4.148 19 C -0.176 4.176 20 C 0.049 3.951 21 N -0.344 5.344 22 C -0.359 4.359 23 H 0.094 0.906 24 C -0.260 4.260 25 N -0.599 5.599 26 Si 0.798 3.202 27 H -0.212 1.212 28 H -0.224 1.224 29 H -0.195 1.195 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.254 0.746 38 H 0.252 0.748 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.089 0.911 46 H 0.118 0.882 47 H 0.098 0.902 48 H 0.082 0.918 49 H 0.046 0.954 50 H 0.008 0.992 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.057 -2.958 28.933 29.708 hybrid contribution -0.308 0.677 -1.708 1.863 sum 5.749 -2.281 27.225 27.919 Atomic orbital electron populations 1.21728 0.94412 1.02259 1.02102 1.21284 0.96809 0.94878 1.01220 1.20172 0.85852 0.98882 1.03540 1.22576 0.97380 0.95185 0.89401 1.77119 0.87754 1.27235 1.22582 1.46161 1.07398 1.55578 1.06089 0.68986 1.23807 0.98999 0.93011 0.85700 1.20292 0.93881 1.25999 0.93346 1.17596 0.85304 0.75105 0.84543 1.90745 1.18293 1.52537 1.84965 1.45642 1.10178 1.75351 1.05180 1.21205 0.97506 1.00844 0.80044 1.21624 0.96511 1.04189 0.92123 1.21821 0.98765 1.00210 0.94514 1.21241 0.93592 0.96707 0.83905 0.94534 1.22584 0.99299 0.96601 0.96296 1.22882 0.97325 1.00925 0.96481 1.21201 0.91431 0.88185 0.94317 1.44861 1.59089 1.25508 1.04929 1.19293 1.20758 0.94805 1.01005 0.90621 1.25664 1.01712 0.99547 0.99030 1.70146 1.48741 1.27502 1.13518 0.85211 0.78348 0.78575 0.78068 1.21237 1.22363 1.19545 0.91517 0.93271 0.91919 0.93531 0.91819 0.89781 0.90042 0.74614 0.74764 0.93564 0.93121 0.88948 0.89879 0.94660 0.94154 0.91095 0.88247 0.90184 0.91760 0.95365 0.99205 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.91 71.98 0.71 -1.85 16 2 C -0.10 -2.09 5.92 30.60 0.18 -1.91 16 3 C -0.05 -0.98 5.25 29.85 0.16 -0.82 16 4 C 0.12 2.63 6.52 43.52 0.28 2.92 16 5 N -0.32 -6.13 12.63 -46.67 -0.59 -6.72 16 6 N -0.45 -4.30 7.29 -56.31 -0.41 -4.71 16 7 H 0.46 0.78 8.96 -213.43 -1.91 -1.14 16 8 C 0.14 1.21 11.52 84.27 0.97 2.18 16 9 C -0.32 -6.08 6.13 -20.15 -0.12 -6.20 16 10 C 0.59 14.19 7.81 86.66 0.68 14.86 16 11 O -0.58 -19.43 14.92 -4.06 -0.06 -19.49 16 12 N -0.71 -13.09 5.54 -466.37 -2.59 -15.67 16 13 C 0.13 3.10 5.67 86.38 0.49 3.59 16 14 C -0.11 -2.30 5.10 30.60 0.16 -2.15 16 15 C -0.11 -3.82 4.72 30.59 0.14 -3.67 16 16 C 0.15 5.64 3.16 45.34 0.14 5.78 16 17 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 18 C -0.11 -3.22 5.71 31.78 0.18 -3.04 16 19 C -0.14 -4.79 7.08 31.98 0.23 -4.57 16 20 C 0.17 8.56 5.41 86.86 0.47 9.03 16 21 N -0.62 -31.16 3.13 -668.27 -2.09 -33.25 16 22 C -0.23 -12.81 9.70 84.04 0.82 -12.00 16 23 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 24 C -0.07 -3.84 5.47 84.86 0.46 -3.38 16 25 N -0.95 -58.17 10.58 21.65 0.23 -57.94 16 26 Si 0.97 46.71 29.55 68.60 2.03 48.74 16 27 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 28 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 29 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 30 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.08 2.10 6.55 -2.38 -0.02 2.09 16 37 H 0.24 -0.59 7.46 -2.91 -0.02 -0.61 16 38 H 0.42 3.91 7.40 -92.71 -0.69 3.22 16 39 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.56 7.65 -2.39 -0.02 1.54 16 42 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.03 1.38 7.84 -2.39 -0.02 1.36 16 44 H 0.04 1.49 8.03 -2.39 -0.02 1.48 16 45 H 0.07 1.97 7.78 -2.39 -0.02 1.95 16 46 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 47 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 48 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 49 H 0.03 1.58 6.93 -2.39 -0.02 1.56 16 50 H -0.01 -0.55 8.06 -2.39 -0.02 -0.57 16 51 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -81.68 408.68 0.80 -80.88 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -1.67 Total: 9.40 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: 5.95 Total: -1.22 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -5.45 Total: -118.30 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -0.06 Total: -19.49 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.74 kcal Total: -81.68 0.80 -80.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567254417.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.749 kcal (2) G-P(sol) polarization free energy of solvation -81.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds