Wall clock time and date at job start Tue Mar 31 2020 19:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47061 * 2 1 4 4 C 1.50705 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.35362 * 126.38707 * 275.30115 * 4 3 2 6 6 C 1.41505 * 105.50411 * 180.14122 * 5 4 3 7 7 C 1.47704 * 126.51835 * 179.84444 * 6 5 4 8 8 O 1.21573 * 119.99925 * 359.71284 * 7 6 5 9 9 N 1.34778 * 119.99914 * 179.71224 * 7 6 5 10 10 C 1.46503 * 119.99812 * 179.72618 * 9 7 6 11 11 C 1.52999 * 109.46817 * 180.27586 * 10 9 7 12 12 C 1.53003 * 109.46906 * 179.97438 * 11 10 9 13 13 C 1.53036 * 109.46204 * 295.02881 * 12 11 10 14 14 C 1.53191 * 109.31541 * 178.60249 * 13 12 11 15 15 N 1.46927 * 108.76291 * 54.65169 * 14 13 12 16 16 C 1.36937 * 120.62805 * 126.40905 * 15 14 13 17 17 H 1.07998 * 120.00167 * 332.61030 * 16 15 14 18 18 C 1.38819 * 120.00337 * 152.60431 * 16 15 14 19 19 N 1.31615 * 120.00484 * 159.34354 * 18 16 15 20 20 Si 1.86800 * 119.99682 * 339.34750 * 18 16 15 21 21 H 1.48499 * 109.47428 * 92.93537 * 20 18 16 22 22 H 1.48494 * 109.47300 * 212.93983 * 20 18 16 23 23 H 1.48505 * 109.47449 * 332.94128 * 20 18 16 24 24 C 1.46925 * 118.74004 * 306.38323 * 15 14 13 25 25 C 1.53043 * 109.45935 * 174.97161 * 12 11 10 26 26 N 1.31809 * 106.96079 * 359.58017 * 6 5 4 27 27 N 1.28473 * 110.07328 * 0.26540 * 26 6 5 28 28 H 0.97001 * 124.88314 * 179.97438 * 27 26 6 29 29 H 1.09003 * 109.46979 * 299.99769 * 1 2 3 30 30 H 1.08998 * 109.47188 * 59.99430 * 1 2 3 31 31 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46531 * 240.00129 * 2 1 3 33 33 H 1.08998 * 109.47188 * 120.00570 * 2 1 3 34 34 H 1.08998 * 109.47343 * 60.00626 * 3 2 1 35 35 H 1.08998 * 109.47585 * 300.00327 * 3 2 1 36 36 H 1.08006 * 127.24756 * 359.97438 * 5 4 3 37 37 H 0.96992 * 119.99842 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.46989 * 300.27711 * 10 9 7 39 39 H 1.08999 * 109.47165 * 60.27802 * 10 9 7 40 40 H 1.09008 * 109.47282 * 299.99435 * 11 10 9 41 41 H 1.08990 * 109.47203 * 60.00045 * 11 10 9 42 42 H 1.09002 * 109.46181 * 54.99965 * 12 11 10 43 43 H 1.09004 * 109.49427 * 298.56327 * 13 12 11 44 44 H 1.08996 * 109.50046 * 58.65850 * 13 12 11 45 45 H 1.08997 * 109.59796 * 294.86799 * 14 13 12 46 46 H 1.09000 * 109.70486 * 174.50189 * 14 13 12 47 47 H 0.96993 * 120.00301 * 180.02562 * 19 18 16 48 48 H 1.08997 * 109.58873 * 293.82119 * 24 15 14 49 49 H 1.09003 * 109.70231 * 173.47118 * 24 15 14 50 50 H 1.09002 * 109.49951 * 301.33576 * 25 12 11 51 51 H 1.09000 * 109.49459 * 61.43365 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3505 1.3415 1.0841 6 6 5.6724 1.3915 0.5816 7 6 6.9171 1.3224 1.3738 8 8 6.8624 1.2164 2.5837 9 7 8.1134 1.3768 0.7554 10 6 9.3479 1.3142 1.5417 11 6 10.5543 1.4021 0.6048 12 6 11.8436 1.3374 1.4261 13 6 11.9377 2.5720 2.3255 14 6 13.2120 2.4867 3.1714 15 7 14.3624 2.3036 2.2759 16 6 15.4399 3.1460 2.3432 17 1 15.3118 4.1599 2.6923 18 6 16.6971 2.6966 1.9629 19 7 17.6337 3.5612 1.6350 20 14 17.0595 0.8647 1.9165 21 1 16.8017 0.3435 0.5500 22 1 18.4817 0.6322 2.2748 23 1 16.1831 0.1619 2.8876 24 6 14.3348 1.1993 1.3072 25 6 13.0478 1.2990 0.4824 26 7 5.5817 1.5058 -0.7284 27 7 4.3476 1.5369 -1.0840 28 1 4.0357 1.6170 -1.9990 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 4.0466 1.2460 2.1161 37 1 8.1569 1.4610 -0.2099 38 1 9.3730 2.1462 2.2455 39 1 9.3819 0.3730 2.0905 40 1 10.5292 0.5700 -0.0989 41 1 10.5203 2.3432 0.0561 42 1 11.8367 0.4387 2.0427 43 1 11.9699 3.4700 1.7084 44 1 11.0680 2.6117 2.9812 45 1 13.1418 1.6397 3.8538 46 1 13.3363 3.4068 3.7425 47 1 18.5119 3.2472 1.3689 48 1 14.3562 0.2473 1.8376 49 1 15.1988 1.2687 0.6462 50 1 12.9683 0.4323 -0.1739 51 1 13.0694 2.2091 -0.1171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568128098.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:51 Heat of formation + Delta-G solvation = 31.764878 kcal Electronic energy + Delta-G solvation = -27832.246794 eV Core-core repulsion = 23960.722245 eV Total energy + Delta-G solvation = -3871.524549 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.08618 -39.54421 -38.19338 -35.91942 -35.50618 -33.60222 -32.29947 -31.53871 -31.28860 -30.33525 -28.93258 -27.02327 -25.57939 -23.92692 -23.14579 -22.51965 -21.94495 -21.42571 -21.02800 -20.09289 -19.23540 -18.14394 -17.14005 -16.77454 -16.21666 -15.90555 -15.65728 -15.35898 -15.16245 -14.53376 -14.23773 -14.10846 -14.07938 -13.94573 -13.66525 -13.59900 -13.27732 -13.05942 -12.80702 -12.70046 -12.28547 -12.10784 -11.89409 -11.79992 -11.64298 -11.44440 -11.39841 -11.16923 -11.09412 -10.73332 -10.51701 -10.35156 -10.29400 -10.03119 -9.78622 -9.72739 -9.56778 -9.37262 -9.34275 -9.10491 -8.55394 -6.89948 -5.89839 -3.24427 1.25255 1.71205 2.40683 3.04411 3.23595 3.35743 3.52231 3.56030 4.01608 4.11686 4.30805 4.42904 4.58130 4.69297 4.82174 4.86201 5.01238 5.02948 5.05644 5.09094 5.18722 5.21235 5.25307 5.39430 5.42157 5.46700 5.48491 5.62059 5.62542 5.68907 5.73190 5.91173 5.93590 5.99200 6.06980 6.09400 6.18029 6.31096 6.34281 6.47216 6.53428 6.54460 6.64387 6.72881 6.75568 6.79784 7.07243 7.26854 7.54715 8.03159 8.06853 8.38521 9.01153 9.78449 10.17541 11.26440 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.039847 B = 0.001632 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.514331 B =17154.394004 C =17268.478863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.051 4.051 4 C 0.016 3.984 5 C -0.174 4.174 6 C -0.008 4.008 7 C 0.600 3.400 8 O -0.532 6.532 9 N -0.716 5.716 10 C 0.117 3.883 11 C -0.125 4.125 12 C -0.076 4.076 13 C -0.132 4.132 14 C 0.148 3.852 15 N -0.607 5.607 16 C -0.257 4.257 17 H 0.085 0.915 18 C 0.022 3.978 19 N -0.911 5.911 20 Si 0.883 3.117 21 H -0.289 1.289 22 H -0.304 1.304 23 H -0.271 1.271 24 C 0.125 3.875 25 C -0.127 4.127 26 N -0.259 5.259 27 N -0.380 5.380 28 H 0.444 0.556 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.406 0.594 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.021 0.979 46 H 0.061 0.939 47 H 0.262 0.738 48 H 0.023 0.977 49 H 0.071 0.929 50 H 0.052 0.948 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.839 -6.619 -7.500 36.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.090 4.090 4 C -0.110 4.110 5 C -0.202 4.202 6 C -0.169 4.169 7 C 0.384 3.616 8 O -0.407 6.407 9 N -0.367 5.367 10 C -0.006 4.006 11 C -0.163 4.163 12 C -0.095 4.095 13 C -0.171 4.171 14 C 0.022 3.978 15 N -0.331 5.331 16 C -0.386 4.386 17 H 0.102 0.898 18 C -0.177 4.177 19 N -0.554 5.554 20 Si 0.714 3.286 21 H -0.217 1.217 22 H -0.233 1.233 23 H -0.196 1.196 24 C 0.000 4.000 25 C -0.167 4.167 26 N -0.095 5.095 27 N -0.094 5.094 28 H 0.288 0.712 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.180 0.820 37 H 0.240 0.760 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.039 0.961 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.041 0.959 49 H 0.089 0.911 50 H 0.070 0.930 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -33.978 -6.566 -7.540 35.419 hybrid contribution -0.240 -0.994 -0.463 1.123 sum -34.218 -7.560 -8.003 35.945 Atomic orbital electron populations 1.21782 0.95110 1.02142 1.02060 1.21548 0.96120 0.95371 1.02919 1.20241 0.86144 0.98413 1.04187 1.21446 0.95110 1.07128 0.87285 1.21525 0.90376 1.08419 0.99913 1.21977 0.95330 1.09767 0.89870 1.16887 0.81707 0.76656 0.86347 1.90813 1.86814 1.49879 1.13148 1.45928 1.05464 1.73886 1.11414 1.21580 0.81839 1.02768 0.94425 1.21888 0.93717 1.02522 0.98197 1.20971 0.92795 0.99068 0.96656 1.22127 0.98725 0.97549 0.98715 1.20925 0.86316 0.99165 0.91427 1.44359 1.17802 1.33782 1.37109 1.18946 0.84941 0.93166 1.41499 0.89781 1.25275 0.95570 0.97195 0.99642 1.69838 1.04763 1.33500 1.47300 0.86939 0.76267 0.87782 0.77609 1.21723 1.23252 1.19611 1.21315 0.96237 0.90765 0.91696 1.22046 0.95735 1.01112 0.97760 1.73546 1.01611 1.19211 1.15101 1.43307 1.02923 1.53252 1.09902 0.71155 0.92318 0.92650 0.92357 0.91985 0.91078 0.88873 0.90544 0.81991 0.75959 0.90664 0.91281 0.91605 0.91254 0.91502 0.91922 0.92525 0.96093 0.92009 0.92864 0.95915 0.91103 0.92969 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.41 9.91 37.16 0.37 -0.05 16 2 C -0.12 -0.42 5.92 -26.73 -0.16 -0.58 16 3 C -0.05 -0.17 5.77 -27.88 -0.16 -0.33 16 4 C 0.02 0.10 6.48 -82.21 -0.53 -0.43 16 5 C -0.17 -1.63 10.73 -39.36 -0.42 -2.06 16 6 C -0.01 -0.09 7.13 -82.77 -0.59 -0.68 16 7 C 0.60 7.97 7.82 -12.39 -0.10 7.87 16 8 O -0.53 -8.72 16.93 5.30 0.09 -8.63 16 9 N -0.72 -8.24 5.55 -61.29 -0.34 -8.58 16 10 C 0.12 1.41 5.43 -4.04 -0.02 1.39 16 11 C -0.13 -1.49 4.80 -26.73 -0.13 -1.62 16 12 C -0.08 -1.14 2.15 -90.58 -0.19 -1.33 16 13 C -0.13 -2.16 5.14 -26.61 -0.14 -2.30 16 14 C 0.15 2.97 6.52 -3.71 -0.02 2.94 16 15 N -0.61 -14.68 2.77 -172.32 -0.48 -15.15 16 16 C -0.26 -7.33 10.04 -15.06 -0.15 -7.48 16 17 H 0.08 2.55 8.06 -52.49 -0.42 2.13 16 18 C 0.02 0.64 5.23 -17.43 -0.09 0.55 16 19 N -0.91 -28.34 13.97 55.49 0.78 -27.57 16 20 Si 0.88 22.83 24.35 -169.99 -4.14 18.69 16 21 H -0.29 -7.19 6.62 56.52 0.37 -6.82 16 22 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 23 H -0.27 -6.91 6.64 56.52 0.38 -6.54 16 24 C 0.13 2.77 4.20 -3.71 -0.02 2.75 16 25 C -0.13 -2.22 5.36 -26.61 -0.14 -2.36 16 26 N -0.26 -2.46 11.92 33.42 0.40 -2.07 16 27 N -0.38 -2.41 6.83 33.50 0.23 -2.18 16 28 H 0.44 1.23 8.96 -190.44 -1.71 -0.48 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.05 0.12 8.14 -51.93 -0.42 -0.30 16 31 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.14 8.14 -51.93 -0.42 -0.28 16 36 H 0.16 1.41 8.06 -52.48 -0.42 0.99 16 37 H 0.41 3.97 8.20 -40.82 -0.33 3.63 16 38 H 0.08 0.99 6.53 -51.93 -0.34 0.65 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 0.81 6.50 -51.93 -0.34 0.47 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 47 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 48 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 49 H 0.07 1.72 4.50 -51.93 -0.23 1.49 16 50 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 401.56 15.07 6.05 6.05 Total: -1.00 -34.91 401.56 -10.02 -44.93 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -10.11 Total: -1.78 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -2.50 Total: -3.71 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: 0.58 Total: -55.55 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -4.14 Total: 18.69 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.91 -10.02 -44.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568128098.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.690 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds