Wall clock time and date at job start Tue Mar 31 2020 19:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47061 * 2 1 4 4 C 1.50705 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.35362 * 126.38707 * 275.30115 * 4 3 2 6 6 C 1.41505 * 105.50411 * 180.14122 * 5 4 3 7 7 C 1.47704 * 126.51835 * 179.84444 * 6 5 4 8 8 O 1.21573 * 119.99925 * 359.71284 * 7 6 5 9 9 N 1.34778 * 119.99914 * 179.71224 * 7 6 5 10 10 C 1.46503 * 119.99812 * 179.72618 * 9 7 6 11 11 C 1.52999 * 109.46817 * 180.27586 * 10 9 7 12 12 C 1.53003 * 109.46906 * 179.97438 * 11 10 9 13 13 C 1.53036 * 109.46204 * 295.02881 * 12 11 10 14 14 C 1.53191 * 109.31541 * 178.60249 * 13 12 11 15 15 N 1.46927 * 108.76291 * 54.65169 * 14 13 12 16 16 C 1.36937 * 120.62805 * 126.40905 * 15 14 13 17 17 H 1.07998 * 120.00167 * 332.61030 * 16 15 14 18 18 C 1.38819 * 120.00337 * 152.60431 * 16 15 14 19 19 N 1.31615 * 120.00484 * 159.34354 * 18 16 15 20 20 Si 1.86800 * 119.99682 * 339.34750 * 18 16 15 21 21 H 1.48499 * 109.47428 * 92.93537 * 20 18 16 22 22 H 1.48494 * 109.47300 * 212.93983 * 20 18 16 23 23 H 1.48505 * 109.47449 * 332.94128 * 20 18 16 24 24 C 1.46925 * 118.74004 * 306.38323 * 15 14 13 25 25 C 1.53043 * 109.45935 * 174.97161 * 12 11 10 26 26 N 1.31809 * 106.96079 * 359.58017 * 6 5 4 27 27 N 1.28473 * 110.07328 * 0.26540 * 26 6 5 28 28 H 0.97001 * 124.88314 * 179.97438 * 27 26 6 29 29 H 1.09003 * 109.46979 * 299.99769 * 1 2 3 30 30 H 1.08998 * 109.47188 * 59.99430 * 1 2 3 31 31 H 1.09001 * 109.47391 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46531 * 240.00129 * 2 1 3 33 33 H 1.08998 * 109.47188 * 120.00570 * 2 1 3 34 34 H 1.08998 * 109.47343 * 60.00626 * 3 2 1 35 35 H 1.08998 * 109.47585 * 300.00327 * 3 2 1 36 36 H 1.08006 * 127.24756 * 359.97438 * 5 4 3 37 37 H 0.96992 * 119.99842 * 359.97438 * 9 7 6 38 38 H 1.09002 * 109.46989 * 300.27711 * 10 9 7 39 39 H 1.08999 * 109.47165 * 60.27802 * 10 9 7 40 40 H 1.09008 * 109.47282 * 299.99435 * 11 10 9 41 41 H 1.08990 * 109.47203 * 60.00045 * 11 10 9 42 42 H 1.09002 * 109.46181 * 54.99965 * 12 11 10 43 43 H 1.09004 * 109.49427 * 298.56327 * 13 12 11 44 44 H 1.08996 * 109.50046 * 58.65850 * 13 12 11 45 45 H 1.08997 * 109.59796 * 294.86799 * 14 13 12 46 46 H 1.09000 * 109.70486 * 174.50189 * 14 13 12 47 47 H 0.96993 * 120.00301 * 180.02562 * 19 18 16 48 48 H 1.08997 * 109.58873 * 293.82119 * 24 15 14 49 49 H 1.09003 * 109.70231 * 173.47118 * 24 15 14 50 50 H 1.09002 * 109.49951 * 301.33576 * 25 12 11 51 51 H 1.09000 * 109.49459 * 61.43365 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.3505 1.3415 1.0841 6 6 5.6724 1.3915 0.5816 7 6 6.9171 1.3224 1.3738 8 8 6.8624 1.2164 2.5837 9 7 8.1134 1.3768 0.7554 10 6 9.3479 1.3142 1.5417 11 6 10.5543 1.4021 0.6048 12 6 11.8436 1.3374 1.4261 13 6 11.9377 2.5720 2.3255 14 6 13.2120 2.4867 3.1714 15 7 14.3624 2.3036 2.2759 16 6 15.4399 3.1460 2.3432 17 1 15.3118 4.1599 2.6923 18 6 16.6971 2.6966 1.9629 19 7 17.6337 3.5612 1.6350 20 14 17.0595 0.8647 1.9165 21 1 16.8017 0.3435 0.5500 22 1 18.4817 0.6322 2.2748 23 1 16.1831 0.1619 2.8876 24 6 14.3348 1.1993 1.3072 25 6 13.0478 1.2990 0.4824 26 7 5.5817 1.5058 -0.7284 27 7 4.3476 1.5369 -1.0840 28 1 4.0357 1.6170 -1.9990 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6766 1.9563 -0.8899 36 1 4.0466 1.2460 2.1161 37 1 8.1569 1.4610 -0.2099 38 1 9.3730 2.1462 2.2455 39 1 9.3819 0.3730 2.0905 40 1 10.5292 0.5700 -0.0989 41 1 10.5203 2.3432 0.0561 42 1 11.8367 0.4387 2.0427 43 1 11.9699 3.4700 1.7084 44 1 11.0680 2.6117 2.9812 45 1 13.1418 1.6397 3.8538 46 1 13.3363 3.4068 3.7425 47 1 18.5119 3.2472 1.3689 48 1 14.3562 0.2473 1.8376 49 1 15.1988 1.2687 0.6462 50 1 12.9683 0.4323 -0.1739 51 1 13.0694 2.2091 -0.1171 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568128098.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:49 Heat of formation + Delta-G solvation = 7.578426 kcal Electronic energy + Delta-G solvation = -27833.295598 eV Core-core repulsion = 23960.722245 eV Total energy + Delta-G solvation = -3872.573352 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.72343 -40.56906 -39.65177 -36.80037 -36.24020 -35.09607 -33.50095 -32.87569 -31.94275 -31.85402 -30.27788 -27.44901 -26.98863 -25.29086 -24.54917 -23.38115 -22.85690 -22.36093 -21.93467 -21.17002 -20.58489 -18.79811 -18.67720 -17.96453 -17.20632 -16.98076 -16.87026 -16.27645 -15.93256 -15.89156 -15.37392 -15.27266 -15.16303 -15.04524 -14.75472 -14.59781 -14.41675 -14.27120 -14.05703 -13.91678 -13.39412 -13.15777 -13.05749 -12.89046 -12.47874 -12.44766 -12.29495 -12.15936 -12.12750 -12.00713 -11.93155 -11.68315 -11.55985 -11.53253 -11.33570 -11.10995 -11.04869 -10.63063 -10.51646 -10.05449 -9.96212 -8.90128 -8.16097 -5.46729 0.47451 1.08125 1.29443 1.41275 1.50849 1.84314 2.22794 2.32659 2.42225 3.07516 3.34452 3.39533 3.64475 3.77579 3.90972 3.95262 4.05420 4.17111 4.20667 4.29413 4.37108 4.42943 4.46021 4.54754 4.62301 4.63031 4.67740 4.69572 4.77757 4.85614 4.93065 4.94235 4.98757 4.99099 5.02360 5.07226 5.23224 5.26282 5.29281 5.30765 5.31551 5.34933 5.36260 5.41158 5.47893 5.65011 5.88602 6.07087 6.13384 6.43750 6.84471 6.94455 7.13389 7.65087 8.05841 9.04158 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.039847 B = 0.001632 C = 0.001621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.514331 B =17154.394004 C =17268.478863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.047 4.047 4 C 0.038 3.962 5 C -0.200 4.200 6 C -0.036 4.036 7 C 0.597 3.403 8 O -0.573 6.573 9 N -0.706 5.706 10 C 0.121 3.879 11 C -0.110 4.110 12 C -0.071 4.071 13 C -0.122 4.122 14 C 0.140 3.860 15 N -0.621 5.621 16 C -0.249 4.249 17 H 0.048 0.952 18 C -0.036 4.036 19 N -0.959 5.959 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.311 1.311 23 H -0.264 1.264 24 C 0.117 3.883 25 C -0.119 4.119 26 N -0.265 5.265 27 N -0.362 5.362 28 H 0.461 0.539 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.159 0.841 37 H 0.415 0.585 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.051 0.949 44 H 0.080 0.920 45 H 0.032 0.968 46 H 0.049 0.951 47 H 0.261 0.739 48 H 0.031 0.969 49 H 0.046 0.954 50 H 0.083 0.917 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.989 -8.391 -9.238 39.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.086 4.086 4 C -0.089 4.089 5 C -0.228 4.228 6 C -0.195 4.195 7 C 0.382 3.618 8 O -0.451 6.451 9 N -0.357 5.357 10 C -0.002 4.002 11 C -0.148 4.148 12 C -0.090 4.090 13 C -0.161 4.161 14 C 0.015 3.985 15 N -0.346 5.346 16 C -0.379 4.379 17 H 0.066 0.934 18 C -0.231 4.231 19 N -0.605 5.605 20 Si 0.779 3.221 21 H -0.199 1.199 22 H -0.240 1.240 23 H -0.188 1.188 24 C -0.008 4.008 25 C -0.158 4.158 26 N -0.102 5.102 27 N -0.079 5.079 28 H 0.309 0.691 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.177 0.823 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.050 0.950 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.049 0.951 49 H 0.065 0.935 50 H 0.101 0.899 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -37.173 -8.357 -9.326 39.226 hybrid contribution 0.626 -0.366 0.072 0.728 sum -36.548 -8.723 -9.254 38.697 Atomic orbital electron populations 1.21768 0.94356 1.02191 1.02625 1.21511 0.96704 0.95193 1.02339 1.20373 0.83696 0.98730 1.05816 1.21776 0.96300 1.04575 0.86255 1.21683 0.90340 1.09958 1.00834 1.21797 0.95092 1.12054 0.90607 1.17198 0.82642 0.75875 0.86069 1.90779 1.87471 1.51946 1.14856 1.45826 1.04908 1.73093 1.11849 1.21470 0.82193 1.02184 0.94378 1.21704 0.91581 1.03698 0.97766 1.20913 0.93337 0.98422 0.96345 1.22009 0.97339 0.98044 0.98699 1.21122 0.86625 0.98980 0.91734 1.44504 1.17585 1.33762 1.38779 1.18895 0.86588 0.92538 1.39880 0.93377 1.25907 0.95440 1.01466 1.00264 1.69969 1.05303 1.35600 1.49669 0.85864 0.75438 0.82372 0.78473 1.19895 1.24015 1.18826 1.21419 0.97876 0.90036 0.91458 1.21939 0.94131 1.02017 0.97718 1.73470 1.03074 1.19453 1.14219 1.43412 1.02109 1.51504 1.10919 0.69052 0.92156 0.91685 0.92623 0.91926 0.92393 0.88159 0.88027 0.82286 0.74800 0.91742 0.91592 0.89534 0.90810 0.90732 0.93001 0.90155 0.94991 0.93252 0.92999 0.95103 0.93548 0.89878 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.49 9.91 71.98 0.71 0.22 16 2 C -0.12 -0.58 5.92 30.59 0.18 -0.40 16 3 C -0.05 -0.19 5.77 29.85 0.17 -0.02 16 4 C 0.04 0.41 6.48 41.40 0.27 0.68 16 5 C -0.20 -3.60 10.73 22.41 0.24 -3.36 16 6 C -0.04 -0.78 7.13 42.46 0.30 -0.48 16 7 C 0.60 15.57 7.82 86.74 0.68 16.25 16 8 O -0.57 -18.95 16.93 -3.95 -0.07 -19.01 16 9 N -0.71 -15.13 5.55 -466.10 -2.59 -17.71 16 10 C 0.12 2.67 5.43 86.38 0.47 3.14 16 11 C -0.11 -2.25 4.80 30.59 0.15 -2.10 16 12 C -0.07 -1.92 2.15 -10.77 -0.02 -1.95 16 13 C -0.12 -3.79 5.14 30.67 0.16 -3.64 16 14 C 0.14 5.55 6.52 86.36 0.56 6.12 16 15 N -0.62 -29.97 2.77 -699.10 -1.94 -31.91 16 16 C -0.25 -14.61 10.04 84.04 0.84 -13.76 16 17 H 0.05 3.09 8.06 -2.91 -0.02 3.07 16 18 C -0.04 -2.18 5.23 84.86 0.44 -1.73 16 19 N -0.96 -61.63 13.97 21.65 0.30 -61.32 16 20 Si 0.95 47.71 24.35 68.60 1.67 49.38 16 21 H -0.27 -12.81 6.62 99.48 0.66 -12.15 16 22 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 23 H -0.26 -12.76 6.64 99.48 0.66 -12.10 16 24 C 0.12 4.96 4.20 86.36 0.36 5.32 16 25 C -0.12 -3.83 5.36 30.67 0.16 -3.66 16 26 N -0.26 -4.57 11.92 -48.18 -0.57 -5.15 16 27 N -0.36 -3.71 6.83 -47.93 -0.33 -4.03 16 28 H 0.46 1.09 8.96 -219.99 -1.97 -0.88 16 29 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 30 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 31 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 33 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 35 H 0.10 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.42 7.22 8.20 -92.71 -0.76 6.46 16 38 H 0.06 1.58 6.53 -2.39 -0.02 1.57 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.08 2.14 6.50 -2.39 -0.02 2.12 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 47 H 0.26 15.91 8.31 -92.71 -0.77 15.14 16 48 H 0.03 1.27 7.07 -2.39 -0.02 1.25 16 49 H 0.05 2.19 4.50 -2.39 -0.01 2.18 16 50 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 51 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -78.35 401.56 0.27 -78.08 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -1.89 Total: 11.05 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 5.68 Total: 0.64 kcal Atomic # 7 Polarization: -115.01 SS G_CDS: -5.12 Total: -120.13 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: -0.07 Total: -19.01 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.67 Total: 49.38 kcal Total: -78.35 0.27 -78.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568128098.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.661 kcal (2) G-P(sol) polarization free energy of solvation -78.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds