Wall clock time and date at job start Tue Mar 31 2020 18:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47056 * 2 1 4 4 C 1.34671 * 126.58744 * 275.04074 * 3 2 1 5 5 N 1.34126 * 108.02205 * 179.74567 * 4 3 2 6 6 C 1.30500 * 109.25491 * 0.36720 * 5 4 3 7 7 C 1.50705 * 125.65384 * 179.89207 * 6 5 4 8 8 C 1.50700 * 109.47212 * 304.69591 * 7 6 5 9 9 O 1.21281 * 119.99557 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00295 * 179.97438 * 8 7 6 11 11 C 1.46932 * 120.62713 * 354.49336 * 10 8 7 12 12 C 1.53189 * 108.77267 * 126.37020 * 11 10 8 13 13 C 1.53042 * 109.34037 * 54.61873 * 12 11 10 14 14 C 1.53041 * 109.53913 * 298.68280 * 13 12 11 15 15 C 1.46925 * 120.63478 * 174.47455 * 10 8 7 16 16 H 1.09004 * 109.58866 * 113.83891 * 15 10 8 17 17 C 1.53003 * 109.58294 * 353.56137 * 15 10 8 18 18 C 1.52999 * 109.47057 * 181.61746 * 17 15 10 19 19 N 1.46502 * 109.47428 * 185.07347 * 18 17 15 20 20 C 1.36939 * 120.00072 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99899 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99725 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99993 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00099 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46812 * 89.99820 * 24 22 20 26 26 H 1.48495 * 109.47651 * 210.00342 * 24 22 20 27 27 H 1.48502 * 109.46989 * 330.00670 * 24 22 20 28 28 N 1.35049 * 108.70003 * 359.63104 * 6 5 4 29 29 H 0.97001 * 126.39760 * 180.24676 * 28 6 5 30 30 H 1.09002 * 109.47334 * 60.00381 * 1 2 3 31 31 H 1.09004 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47271 * 300.00584 * 1 2 3 33 33 H 1.08997 * 109.47209 * 239.99496 * 2 1 3 34 34 H 1.09003 * 109.47061 * 119.99150 * 2 1 3 35 35 H 1.07999 * 125.99144 * 359.97438 * 4 3 2 36 36 H 1.08995 * 109.47389 * 184.69323 * 7 6 5 37 37 H 1.09006 * 109.46573 * 64.69192 * 7 6 5 38 38 H 1.08996 * 109.58467 * 6.58508 * 11 10 8 39 39 H 1.09005 * 109.58580 * 246.15654 * 11 10 8 40 40 H 1.08997 * 109.49614 * 174.58390 * 12 11 10 41 41 H 1.08997 * 109.50000 * 294.65357 * 12 11 10 42 42 H 1.09009 * 109.46045 * 58.66921 * 13 12 11 43 43 H 1.08997 * 109.46358 * 178.62463 * 13 12 11 44 44 H 1.09001 * 109.47269 * 301.36360 * 14 13 12 45 45 H 1.09003 * 109.52483 * 181.29926 * 14 13 12 46 46 H 1.09006 * 109.47104 * 301.61511 * 17 15 10 47 47 H 1.08992 * 109.47362 * 61.61574 * 17 15 10 48 48 H 1.09004 * 109.47187 * 305.07706 * 18 17 15 49 49 H 1.09003 * 109.47349 * 65.06950 * 18 17 15 50 50 H 0.97001 * 119.99729 * 359.97438 * 19 18 17 51 51 H 0.97004 * 119.99966 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2103 2.2093 -1.0772 5 7 2.6641 3.3974 -0.6513 6 6 2.7816 3.3725 0.6482 7 6 3.2633 4.5122 1.5086 8 6 4.6179 4.9661 1.0290 9 8 5.1408 4.4178 0.0820 10 7 5.2481 5.9813 1.6523 11 6 4.5786 6.7339 2.7220 12 6 5.4762 6.7305 3.9633 13 6 6.8603 7.2659 3.5895 14 6 7.4925 6.3570 2.5330 15 6 6.6178 6.3563 1.2754 16 1 6.6151 7.3518 0.8314 17 6 7.1666 5.3461 0.2658 18 6 8.6069 5.7160 -0.0943 19 7 9.0915 4.8226 -1.1494 20 6 10.3632 4.9653 -1.6369 21 1 11.0091 5.7361 -1.2432 22 6 10.8224 4.1183 -2.6362 23 7 10.0354 3.1786 -3.1155 24 14 12.5569 4.3133 -3.3018 25 1 13.4894 3.4748 -2.5063 26 1 12.5933 3.8829 -4.7225 27 1 12.9669 5.7373 -3.2053 28 7 2.3945 2.1582 1.0948 29 1 2.3764 1.8637 2.0188 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.0175 1.9345 -2.1037 36 1 3.3371 4.1798 2.5440 37 1 2.5579 5.3407 1.4423 38 1 3.6252 6.2620 2.9591 39 1 4.4097 7.7603 2.3960 40 1 5.0360 7.3653 4.7323 41 1 5.5700 5.7126 4.3417 42 1 6.7632 8.2750 3.1887 43 1 7.4932 7.2873 4.4766 44 1 7.5678 5.3425 2.9244 45 1 8.4876 6.7255 2.2838 46 1 7.1464 4.3478 0.7031 47 1 6.5519 5.3611 -0.6341 48 1 8.6399 6.7468 -0.4474 49 1 9.2396 5.6138 0.7874 50 1 8.5115 4.1300 -1.5026 51 1 10.3562 2.5869 -3.8142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568387619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:24 Heat of formation + Delta-G solvation = 35.191416 kcal Electronic energy + Delta-G solvation = -29342.586891 eV Core-core repulsion = 25471.210928 eV Total energy + Delta-G solvation = -3871.375963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -42.17067 -40.38659 -37.35624 -35.18815 -34.36113 -33.21375 -32.69926 -32.41999 -31.14833 -30.41974 -27.81717 -27.19081 -24.88099 -24.03358 -23.55541 -22.48111 -21.34775 -20.98379 -20.65508 -20.33872 -18.81676 -17.50097 -17.11946 -16.57420 -15.99421 -15.41145 -15.10245 -14.77536 -14.64527 -14.52482 -14.35219 -14.26640 -13.86749 -13.64467 -13.58024 -13.40222 -13.07638 -12.93647 -12.80328 -12.65960 -12.51409 -12.20344 -12.04232 -11.84210 -11.46402 -11.36833 -11.09549 -11.03825 -10.87074 -10.76861 -10.70348 -10.37350 -10.29293 -9.97087 -9.89162 -9.80266 -9.53249 -8.74264 -8.64458 -8.42935 -8.22548 -6.72285 -5.58954 -2.87095 1.92122 2.75611 2.77837 3.09442 3.30358 3.53071 3.57034 3.59844 4.19847 4.46467 4.58023 4.62464 4.69527 4.71179 4.73585 4.78016 4.85276 5.01302 5.04537 5.11142 5.22161 5.24954 5.30779 5.35944 5.40959 5.50662 5.58499 5.60674 5.63761 5.71618 5.72626 5.79413 5.82711 5.86811 5.98126 6.03287 6.19191 6.22126 6.29592 6.45646 6.48490 6.65360 6.76382 6.77501 7.15590 7.26522 7.30113 7.53421 7.83522 8.15456 8.41171 8.59839 9.70053 10.33186 10.67964 11.63925 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.003301 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.534775 B = 8481.218050 C =11518.813907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.025 4.025 4 C -0.017 4.017 5 N -0.453 5.453 6 C 0.216 3.784 7 C -0.054 4.054 8 C 0.512 3.488 9 O -0.484 6.484 10 N -0.614 5.614 11 C 0.107 3.893 12 C -0.135 4.135 13 C -0.120 4.120 14 C -0.133 4.133 15 C 0.156 3.844 16 H 0.070 0.930 17 C -0.116 4.116 18 C 0.149 3.851 19 N -0.731 5.731 20 C -0.236 4.236 21 H 0.068 0.932 22 C -0.017 4.017 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.283 1.283 28 N -0.564 5.564 29 H 0.413 0.587 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.168 0.832 36 H 0.101 0.899 37 H 0.114 0.886 38 H 0.080 0.920 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.095 0.905 48 H 0.012 0.988 49 H 0.013 0.987 50 H 0.386 0.614 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.365 1.705 18.567 29.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.085 4.085 3 C -0.140 4.140 4 C -0.166 4.166 5 N -0.172 5.172 6 C -0.047 4.047 7 C -0.096 4.096 8 C 0.297 3.703 9 O -0.356 6.356 10 N -0.350 5.350 11 C -0.016 4.016 12 C -0.173 4.173 13 C -0.158 4.158 14 C -0.171 4.171 15 C 0.053 3.947 16 H 0.088 0.912 17 C -0.154 4.154 18 C 0.021 3.979 19 N -0.375 5.375 20 C -0.367 4.367 21 H 0.086 0.914 22 C -0.213 4.213 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.219 1.219 26 H -0.218 1.218 27 H -0.209 1.209 28 N -0.168 5.168 29 H 0.250 0.750 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.185 0.815 36 H 0.119 0.881 37 H 0.132 0.868 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.082 0.918 47 H 0.113 0.887 48 H 0.030 0.970 49 H 0.031 0.969 50 H 0.219 0.781 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -21.737 2.143 17.426 27.942 hybrid contribution 0.643 -0.942 0.632 1.304 sum -21.094 1.201 18.058 27.793 Atomic orbital electron populations 1.21774 0.94570 1.01779 1.02295 1.19974 0.95833 0.89216 1.03517 1.21192 1.09251 0.96278 0.87294 1.22125 1.05470 0.90362 0.98632 1.70250 1.16023 1.23237 1.07644 1.22216 1.04527 0.86792 0.91207 1.20007 0.96657 0.95173 0.97716 1.20078 0.86397 0.80246 0.83573 1.90931 1.64742 1.54606 1.25363 1.48128 1.15704 1.33756 1.37398 1.21723 0.95571 0.96957 0.87362 1.21924 0.96395 1.01950 0.97064 1.21534 0.95796 0.99377 0.99079 1.22059 0.99570 1.00438 0.95045 1.21282 0.79394 0.99178 0.94869 0.91161 1.22242 0.96427 0.97245 0.99476 1.20788 0.92118 0.93546 0.91480 1.42372 1.14130 1.38285 1.42713 1.19243 0.90117 1.12618 1.14740 0.91365 1.24752 0.98153 0.98621 0.99782 1.69695 1.35467 1.21648 1.31236 0.86204 0.84652 0.77332 0.78118 1.21890 1.21828 1.20854 1.43040 1.51810 1.12450 1.09479 0.74967 0.92020 0.92138 0.93071 0.89299 0.91390 0.81506 0.88071 0.86804 0.90158 0.91212 0.90977 0.91601 0.91781 0.91810 0.91586 0.89991 0.91778 0.88651 0.97015 0.96891 0.78051 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 37.16 0.37 -0.56 16 2 C -0.05 -0.36 6.49 -27.89 -0.18 -0.54 16 3 C -0.03 -0.28 6.49 -81.60 -0.53 -0.81 16 4 C -0.02 -0.24 11.79 -17.81 -0.21 -0.45 16 5 N -0.45 -7.48 10.60 -10.81 -0.11 -7.60 16 6 C 0.22 2.82 6.95 -155.41 -1.08 1.74 16 7 C -0.05 -0.53 4.68 -29.03 -0.14 -0.67 16 8 C 0.51 7.32 7.52 -10.99 -0.08 7.24 16 9 O -0.48 -9.60 11.11 5.56 0.06 -9.54 16 10 N -0.61 -7.45 2.97 -165.22 -0.49 -7.94 16 11 C 0.11 0.81 6.35 -3.71 -0.02 0.79 16 12 C -0.14 -0.95 6.08 -26.61 -0.16 -1.11 16 13 C -0.12 -1.06 5.89 -26.69 -0.16 -1.22 16 14 C -0.13 -1.64 4.83 -26.61 -0.13 -1.77 16 15 C 0.16 2.25 3.02 -67.60 -0.20 2.04 16 16 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 17 C -0.12 -2.28 3.29 -26.73 -0.09 -2.37 16 18 C 0.15 3.36 5.74 -4.04 -0.02 3.34 16 19 N -0.73 -20.86 5.60 -59.90 -0.34 -21.20 16 20 C -0.24 -7.16 9.99 -15.06 -0.15 -7.31 16 21 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 22 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 23 N -0.93 -30.46 13.06 55.49 0.72 -29.73 16 24 Si 0.91 23.74 29.55 -169.99 -5.02 18.72 16 25 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 26 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 28 N -0.56 -5.80 6.15 -6.54 -0.04 -5.84 16 29 H 0.41 2.74 8.96 -40.82 -0.37 2.37 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.17 2.07 8.06 -52.49 -0.42 1.64 16 36 H 0.10 0.63 7.92 -51.93 -0.41 0.22 16 37 H 0.11 0.87 7.72 -51.93 -0.40 0.47 16 38 H 0.08 0.40 5.93 -51.93 -0.31 0.10 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.08 1.07 6.87 -51.93 -0.36 0.72 16 46 H 0.06 1.38 7.24 -51.93 -0.38 1.00 16 47 H 0.10 2.17 6.23 -51.93 -0.32 1.85 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.01 0.29 6.85 -51.93 -0.36 -0.06 16 50 H 0.39 11.86 7.67 -40.82 -0.31 11.55 16 51 H 0.25 7.96 8.31 -40.82 -0.34 7.62 16 LS Contribution 400.31 15.07 6.03 6.03 Total: -1.00 -39.57 400.31 -10.75 -50.32 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -8.68 Total: 9.09 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.88 Total: -2.30 kcal Atomic # 7 Polarization: -72.06 SS G_CDS: -0.26 Total: -72.32 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.06 Total: -9.54 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -5.02 Total: 18.72 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -39.57 -10.75 -50.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568387619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.512 kcal (2) G-P(sol) polarization free energy of solvation -39.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.18 seconds