Wall clock time and date at job start Tue Mar 31 2020 18:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50697 * 109.47056 * 2 1 4 4 C 1.34671 * 126.58744 * 275.04074 * 3 2 1 5 5 N 1.34126 * 108.02205 * 179.74567 * 4 3 2 6 6 C 1.30500 * 109.25491 * 0.36720 * 5 4 3 7 7 C 1.50705 * 125.65384 * 179.89207 * 6 5 4 8 8 C 1.50700 * 109.47212 * 304.69591 * 7 6 5 9 9 O 1.21281 * 119.99557 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00295 * 179.97438 * 8 7 6 11 11 C 1.46932 * 120.62713 * 354.49336 * 10 8 7 12 12 C 1.53189 * 108.77267 * 126.37020 * 11 10 8 13 13 C 1.53042 * 109.34037 * 54.61873 * 12 11 10 14 14 C 1.53041 * 109.53913 * 298.68280 * 13 12 11 15 15 C 1.46925 * 120.63478 * 174.47455 * 10 8 7 16 16 H 1.09004 * 109.58866 * 113.83891 * 15 10 8 17 17 C 1.53003 * 109.58294 * 353.56137 * 15 10 8 18 18 C 1.52999 * 109.47057 * 181.61746 * 17 15 10 19 19 N 1.46502 * 109.47428 * 185.07347 * 18 17 15 20 20 C 1.36939 * 120.00072 * 179.97438 * 19 18 17 21 21 H 1.07999 * 119.99899 * 0.02562 * 20 19 18 22 22 C 1.38810 * 119.99725 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99993 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00099 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46812 * 89.99820 * 24 22 20 26 26 H 1.48495 * 109.47651 * 210.00342 * 24 22 20 27 27 H 1.48502 * 109.46989 * 330.00670 * 24 22 20 28 28 N 1.35049 * 108.70003 * 359.63104 * 6 5 4 29 29 H 0.97001 * 126.39760 * 180.24676 * 28 6 5 30 30 H 1.09002 * 109.47334 * 60.00381 * 1 2 3 31 31 H 1.09004 * 109.47375 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47271 * 300.00584 * 1 2 3 33 33 H 1.08997 * 109.47209 * 239.99496 * 2 1 3 34 34 H 1.09003 * 109.47061 * 119.99150 * 2 1 3 35 35 H 1.07999 * 125.99144 * 359.97438 * 4 3 2 36 36 H 1.08995 * 109.47389 * 184.69323 * 7 6 5 37 37 H 1.09006 * 109.46573 * 64.69192 * 7 6 5 38 38 H 1.08996 * 109.58467 * 6.58508 * 11 10 8 39 39 H 1.09005 * 109.58580 * 246.15654 * 11 10 8 40 40 H 1.08997 * 109.49614 * 174.58390 * 12 11 10 41 41 H 1.08997 * 109.50000 * 294.65357 * 12 11 10 42 42 H 1.09009 * 109.46045 * 58.66921 * 13 12 11 43 43 H 1.08997 * 109.46358 * 178.62463 * 13 12 11 44 44 H 1.09001 * 109.47269 * 301.36360 * 14 13 12 45 45 H 1.09003 * 109.52483 * 181.29926 * 14 13 12 46 46 H 1.09006 * 109.47104 * 301.61511 * 17 15 10 47 47 H 1.08992 * 109.47362 * 61.61574 * 17 15 10 48 48 H 1.09004 * 109.47187 * 305.07706 * 18 17 15 49 49 H 1.09003 * 109.47349 * 65.06950 * 18 17 15 50 50 H 0.97001 * 119.99729 * 359.97438 * 19 18 17 51 51 H 0.97004 * 119.99966 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2103 2.2093 -1.0772 5 7 2.6641 3.3974 -0.6513 6 6 2.7816 3.3725 0.6482 7 6 3.2633 4.5122 1.5086 8 6 4.6179 4.9661 1.0290 9 8 5.1408 4.4178 0.0820 10 7 5.2481 5.9813 1.6523 11 6 4.5786 6.7339 2.7220 12 6 5.4762 6.7305 3.9633 13 6 6.8603 7.2659 3.5895 14 6 7.4925 6.3570 2.5330 15 6 6.6178 6.3563 1.2754 16 1 6.6151 7.3518 0.8314 17 6 7.1666 5.3461 0.2658 18 6 8.6069 5.7160 -0.0943 19 7 9.0915 4.8226 -1.1494 20 6 10.3632 4.9653 -1.6369 21 1 11.0091 5.7361 -1.2432 22 6 10.8224 4.1183 -2.6362 23 7 10.0354 3.1786 -3.1155 24 14 12.5569 4.3133 -3.3018 25 1 13.4894 3.4748 -2.5063 26 1 12.5933 3.8829 -4.7225 27 1 12.9669 5.7373 -3.2053 28 7 2.3945 2.1582 1.0948 29 1 2.3764 1.8637 2.0188 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 2.0175 1.9345 -2.1037 36 1 3.3371 4.1798 2.5440 37 1 2.5579 5.3407 1.4423 38 1 3.6252 6.2620 2.9591 39 1 4.4097 7.7603 2.3960 40 1 5.0360 7.3653 4.7323 41 1 5.5700 5.7126 4.3417 42 1 6.7632 8.2750 3.1887 43 1 7.4932 7.2873 4.4766 44 1 7.5678 5.3425 2.9244 45 1 8.4876 6.7255 2.2838 46 1 7.1464 4.3478 0.7031 47 1 6.5519 5.3611 -0.6341 48 1 8.6399 6.7468 -0.4474 49 1 9.2396 5.6138 0.7874 50 1 8.5115 4.1300 -1.5026 51 1 10.3562 2.5869 -3.8142 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568387619.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:06 Heat of formation + Delta-G solvation = 7.105797 kcal Electronic energy + Delta-G solvation = -29343.804775 eV Core-core repulsion = 25471.210928 eV Total energy + Delta-G solvation = -3872.593847 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 7.92 seconds Orbital eigenvalues (eV) -43.09599 -41.44689 -38.40686 -36.99782 -35.18195 -34.65817 -33.83251 -33.38244 -32.60044 -31.68231 -29.26807 -28.13867 -26.27084 -25.30127 -24.41178 -24.01316 -22.43433 -22.04239 -21.84586 -21.29055 -19.78935 -19.21192 -18.35981 -17.77228 -17.13703 -16.62507 -16.37159 -15.99954 -15.72364 -15.51307 -15.41167 -15.23218 -15.07261 -14.96793 -14.66363 -14.64045 -14.45107 -14.09092 -13.96209 -13.71946 -13.33206 -13.22961 -13.10571 -12.90653 -12.77520 -12.62431 -12.44229 -12.30436 -12.12971 -12.03064 -11.89777 -11.87101 -11.75032 -11.49842 -11.35079 -10.95723 -10.95036 -10.78283 -9.97702 -9.47603 -9.16436 -9.03925 -7.96334 -5.27984 1.01832 1.42413 1.47196 1.55794 1.74293 1.84679 2.19838 2.35109 2.54157 3.33692 3.35417 3.56411 3.85882 3.89637 3.95414 4.00987 4.05016 4.12782 4.15060 4.18222 4.29111 4.36500 4.44389 4.44513 4.50644 4.54336 4.63218 4.71761 4.74839 4.75794 4.77691 4.82482 4.95452 4.95484 5.03011 5.06063 5.15831 5.20223 5.27384 5.34322 5.38461 5.40350 5.41390 5.51321 5.53685 5.76296 5.81097 6.24069 6.47980 6.59811 7.21240 7.27954 7.36949 8.05046 8.29945 9.27964 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008177 B = 0.003301 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3423.534775 B = 8481.218050 C =11518.813907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.007 4.007 4 C -0.065 4.065 5 N -0.511 5.511 6 C 0.205 3.795 7 C -0.043 4.043 8 C 0.501 3.499 9 O -0.554 6.554 10 N -0.609 5.609 11 C 0.098 3.902 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.128 4.128 15 C 0.160 3.840 16 H 0.074 0.926 17 C -0.091 4.091 18 C 0.149 3.851 19 N -0.750 5.750 20 C -0.249 4.249 21 H 0.080 0.920 22 C -0.084 4.084 23 N -0.975 5.975 24 Si 0.984 3.016 25 H -0.283 1.283 26 H -0.294 1.294 27 H -0.265 1.265 28 N -0.551 5.551 29 H 0.433 0.567 30 H 0.051 0.949 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.165 0.835 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.037 0.963 47 H 0.058 0.942 48 H 0.017 0.983 49 H 0.025 0.975 50 H 0.368 0.632 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.244 2.841 22.122 32.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C -0.124 4.124 4 C -0.212 4.212 5 N -0.230 5.230 6 C -0.059 4.059 7 C -0.084 4.084 8 C 0.289 3.711 9 O -0.432 6.432 10 N -0.343 5.343 11 C -0.023 4.023 12 C -0.168 4.168 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.056 3.944 16 H 0.092 0.908 17 C -0.129 4.129 18 C 0.022 3.978 19 N -0.392 5.392 20 C -0.381 4.381 21 H 0.098 0.902 22 C -0.275 4.275 23 N -0.625 5.625 24 Si 0.812 3.188 25 H -0.210 1.210 26 H -0.220 1.220 27 H -0.190 1.190 28 N -0.156 5.156 29 H 0.274 0.726 30 H 0.070 0.930 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.182 0.818 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.094 0.906 44 H 0.071 0.929 45 H 0.088 0.912 46 H 0.056 0.944 47 H 0.077 0.923 48 H 0.035 0.965 49 H 0.043 0.957 50 H 0.199 0.801 51 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -22.639 3.341 21.083 31.116 hybrid contribution 0.881 -1.278 -0.446 1.615 sum -21.758 2.063 20.637 30.060 Atomic orbital electron populations 1.21724 0.93207 1.02868 1.02022 1.20114 0.96871 0.86969 1.04444 1.21619 1.06982 0.97161 0.86648 1.22352 1.07950 0.91103 0.99813 1.70147 1.17832 1.24957 1.10078 1.22696 1.04188 0.88274 0.90791 1.20142 0.93980 0.95188 0.99130 1.20916 0.87679 0.79840 0.82689 1.90923 1.66813 1.56930 1.28496 1.48224 1.14605 1.33483 1.38023 1.22164 0.96756 0.97378 0.85959 1.21927 0.94959 1.02531 0.97339 1.21534 0.97071 0.98749 0.98045 1.21982 0.98843 1.00737 0.95039 1.21051 0.81484 0.97185 0.94636 0.90810 1.21877 0.94010 0.97548 0.99438 1.20980 0.94095 0.92537 0.90201 1.42674 1.13707 1.38770 1.44022 1.19728 0.90923 1.12669 1.14771 0.90236 1.25775 1.03016 0.98410 1.00342 1.69902 1.37858 1.22829 1.31958 0.84988 0.78831 0.78145 0.76859 1.20962 1.22026 1.18969 1.42974 1.50783 1.11533 1.10320 0.72645 0.93000 0.90336 0.92655 0.89284 0.89527 0.81763 0.83411 0.83875 0.86636 0.89908 0.87668 0.91732 0.90959 0.90603 0.92908 0.91233 0.94393 0.92348 0.96511 0.95739 0.80136 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.86 16 2 C -0.05 -0.65 6.49 29.85 0.19 -0.46 16 3 C -0.01 -0.17 6.49 40.95 0.27 0.10 16 4 C -0.06 -1.96 11.79 83.52 0.98 -0.98 16 5 N -0.51 -17.85 10.60 -188.12 -1.99 -19.85 16 6 C 0.21 5.31 6.95 138.13 0.96 6.27 16 7 C -0.04 -0.77 4.68 29.10 0.14 -0.63 16 8 C 0.50 14.33 7.52 87.66 0.66 14.99 16 9 O -0.55 -23.57 11.11 -3.03 -0.03 -23.60 16 10 N -0.61 -14.01 2.97 -795.02 -2.36 -16.38 16 11 C 0.10 1.09 6.35 86.36 0.55 1.64 16 12 C -0.13 -1.24 6.08 30.67 0.19 -1.05 16 13 C -0.12 -1.69 5.89 30.62 0.18 -1.51 16 14 C -0.13 -3.04 4.83 30.67 0.15 -2.89 16 15 C 0.16 4.65 3.02 44.98 0.14 4.79 16 16 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 17 C -0.09 -3.81 3.29 30.60 0.10 -3.71 16 18 C 0.15 7.01 5.74 86.38 0.50 7.50 16 19 N -0.75 -44.91 5.60 -343.44 -1.92 -46.83 16 20 C -0.25 -15.52 9.99 84.03 0.84 -14.68 16 21 H 0.08 4.65 7.83 -2.91 -0.02 4.63 16 22 C -0.08 -5.29 5.50 84.86 0.47 -4.82 16 23 N -0.97 -66.12 13.06 21.65 0.28 -65.84 16 24 Si 0.98 49.60 29.55 68.60 2.03 51.63 16 25 H -0.28 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.29 -14.79 7.11 99.48 0.71 -14.08 16 27 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 28 N -0.55 -10.72 6.15 -174.60 -1.07 -11.80 16 29 H 0.43 4.65 8.96 -92.71 -0.83 3.82 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.17 4.63 8.06 -2.91 -0.02 4.60 16 36 H 0.15 1.17 7.92 -2.39 -0.02 1.15 16 37 H 0.14 1.70 7.72 -2.38 -0.02 1.68 16 38 H 0.12 0.51 5.93 -2.39 -0.01 0.50 16 39 H 0.08 0.78 8.14 -2.38 -0.02 0.77 16 40 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.07 1.80 6.87 -2.39 -0.02 1.78 16 46 H 0.04 1.76 7.24 -2.38 -0.02 1.74 16 47 H 0.06 2.91 6.23 -2.39 -0.01 2.89 16 48 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 49 H 0.02 1.11 6.85 -2.39 -0.02 1.10 16 50 H 0.37 24.21 7.67 -92.71 -0.71 23.50 16 51 H 0.25 16.31 8.31 -92.71 -0.77 15.54 16 Total: -1.00 -94.33 400.31 1.33 -93.00 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.61 Total: 35.97 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: 7.01 Total: 3.69 kcal Atomic # 7 Polarization: -153.62 SS G_CDS: -7.07 Total: -160.69 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -0.03 Total: -23.60 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.03 Total: 51.63 kcal Total: -94.33 1.33 -93.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568387619.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.110 kcal (2) G-P(sol) polarization free energy of solvation -94.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.92 seconds