Wall clock time and date at job start Tue Mar 31 2020 18:11:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50695 * 109.47200 * 2 1
4 4 C 1.35367 * 126.38811 * 275.29836 * 3 2 1
5 5 C 1.41506 * 105.50081 * 180.14016 * 4 3 2
6 6 C 1.47709 * 126.51410 * 179.84689 * 5 4 3
7 7 O 1.21576 * 120.00149 * 6.03476 * 6 5 4
8 8 N 1.34777 * 119.99905 * 186.04631 * 6 5 4
9 9 C 1.46931 * 120.63226 * 175.33703 * 8 6 5
10 10 C 1.53192 * 108.88861 * 233.66794 * 9 8 6
11 11 C 1.53034 * 109.31447 * 305.28955 * 10 9 8
12 12 C 1.52999 * 109.46312 * 181.37321 * 11 10 9
13 13 C 1.52996 * 109.47317 * 175.00053 * 12 11 10
14 14 N 1.46505 * 109.46809 * 179.97438 * 13 12 11
15 15 C 1.46501 * 120.00138 * 269.99660 * 14 13 12
16 16 C 1.36936 * 119.99930 * 90.00325 * 14 13 12
17 17 H 1.08006 * 120.00009 * 25.19617 * 16 14 13
18 18 C 1.38810 * 120.00276 * 205.19567 * 16 14 13
19 19 N 1.31623 * 119.99488 * 10.11217 * 18 16 14
20 20 Si 1.86793 * 120.00351 * 190.11283 * 18 16 14
21 21 H 1.48494 * 109.47465 * 89.99889 * 20 18 16
22 22 H 1.48505 * 109.46998 * 210.00359 * 20 18 16
23 23 H 1.48504 * 109.47048 * 330.00018 * 20 18 16
24 24 C 1.53042 * 109.53690 * 61.37096 * 11 10 9
25 25 C 1.47207 * 120.81399 * 355.46330 * 8 6 5
26 26 N 1.31809 * 106.96576 * 359.58576 * 5 4 3
27 27 N 1.28470 * 110.07374 * 0.25858 * 26 5 4
28 28 H 0.96995 * 124.88439 * 180.02562 * 27 26 5
29 29 H 1.09002 * 109.47442 * 59.99820 * 1 2 3
30 30 H 1.09005 * 109.47510 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.47020 * 299.99820 * 1 2 3
32 32 H 1.08998 * 109.47214 * 239.99860 * 2 1 3
33 33 H 1.09002 * 109.46967 * 120.00417 * 2 1 3
34 34 H 1.07999 * 127.24920 * 359.97438 * 4 3 2
35 35 H 1.08995 * 109.58532 * 113.80748 * 9 8 6
36 36 H 1.08999 * 109.57885 * 353.52366 * 9 8 6
37 37 H 1.09000 * 109.49534 * 65.24462 * 10 9 8
38 38 H 1.09001 * 109.49502 * 185.30738 * 10 9 8
39 39 H 1.09000 * 109.46439 * 301.34821 * 11 10 9
40 40 H 1.09006 * 109.47202 * 295.00225 * 12 11 10
41 41 H 1.09002 * 109.46947 * 55.00079 * 12 11 10
42 42 H 1.08995 * 109.47263 * 299.99736 * 13 12 11
43 43 H 1.08995 * 109.47294 * 60.00459 * 13 12 11
44 44 H 1.09002 * 109.46821 * 86.00573 * 15 14 13
45 45 H 1.09002 * 109.47377 * 206.00077 * 15 14 13
46 46 H 1.08996 * 109.47591 * 326.00353 * 15 14 13
47 47 H 0.97006 * 119.99618 * 179.97438 * 19 18 16
48 48 H 1.08990 * 109.50294 * 58.58078 * 24 11 10
49 49 H 1.09007 * 109.49917 * 178.68494 * 24 11 10
50 50 H 1.09002 * 109.53324 * 6.54568 * 25 8 6
51 51 H 1.09002 * 109.68091 * 246.23959 * 25 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2051 2.2114 -1.0851
5 6 2.6929 3.4412 -0.5830
6 6 3.0426 4.6375 -1.3758
7 8 2.8172 4.6624 -2.5702
8 7 3.6118 5.7013 -0.7751
9 6 4.0584 6.8569 -1.5650
10 6 5.5276 7.1428 -1.2387
11 6 5.6850 7.3200 0.2732
12 6 7.1452 7.6396 0.5996
13 6 7.2800 7.9394 2.0939
14 7 8.6783 8.2448 2.4065
15 6 9.5952 7.1684 2.7898
16 6 9.1283 9.5364 2.3405
17 1 8.4363 10.3564 2.4649
18 6 10.4737 9.7920 2.1138
19 7 11.2801 8.8118 1.7656
20 14 11.1396 11.5270 2.3028
21 1 11.5915 11.7341 3.7021
22 1 12.2858 11.7206 1.3787
23 1 10.0709 12.5055 1.9778
24 6 5.2746 6.0291 0.9853
25 6 3.8024 5.7306 0.6843
26 7 2.7704 3.3183 0.7270
27 7 2.3882 2.1445 1.0831
28 1 2.3592 1.8244 1.9982
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 2.0139 1.9564 -2.1169
35 1 3.4522 7.7272 -1.3140
36 1 3.9565 6.6346 -2.6272
37 1 6.1436 6.3081 -1.5733
38 1 5.8425 8.0541 -1.7471
39 1 5.0498 8.1389 0.6110
40 1 7.7706 6.7845 0.3427
41 1 7.4642 8.5089 0.0245
42 1 6.6548 8.7945 2.3507
43 1 6.9610 7.0702 2.6690
44 1 10.0197 6.7163 1.8934
45 1 10.3969 7.5760 3.4056
46 1 9.0513 6.4120 3.3555
47 1 12.2203 8.9905 1.6068
48 1 5.8929 5.2050 0.6298
49 1 5.4091 6.1481 2.0605
50 1 3.5321 4.7628 1.1066
51 1 3.1752 6.5078 1.1209
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001568435545.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:11:55
Heat of formation + Delta-G solvation = 54.746553 kcal
Electronic energy + Delta-G solvation = -28965.502554 eV
Core-core repulsion = 25094.974565 eV
Total energy + Delta-G solvation = -3870.527989 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.20 seconds
Orbital eigenvalues (eV)
-43.05277 -39.92232 -37.71622 -35.69701 -34.83259 -33.72010 -32.32960 -31.23080
-30.88679 -29.67026 -28.63442 -25.89317 -25.51193 -24.30886 -23.84013 -23.09459
-21.96022 -21.39732 -20.41592 -19.77798 -18.85619 -18.19018 -16.85760 -16.58339
-16.14457 -15.89707 -15.03315 -14.88547 -14.80218 -14.47804 -14.34067 -13.96482
-13.78667 -13.72468 -13.58996 -13.46761 -12.98741 -12.92164 -12.75672 -12.49318
-12.13725 -12.10102 -11.77166 -11.65549 -11.31417 -11.09950 -10.97555 -10.84406
-10.81135 -10.52379 -10.43822 -10.23569 -10.14139 -9.97569 -9.79740 -9.70128
-9.68634 -9.48867 -9.31010 -8.59429 -8.45561 -6.63406 -5.68434 -3.13446
1.31369 1.79750 2.44116 2.99434 3.29661 3.40984 3.47067 3.48574
4.05088 4.19356 4.39976 4.54847 4.72255 4.77118 4.99533 5.03597
5.04715 5.12322 5.18878 5.26132 5.31614 5.36135 5.42080 5.50217
5.57104 5.64171 5.66400 5.68339 5.78347 5.88097 5.93143 6.00226
6.07755 6.17993 6.24933 6.29926 6.43021 6.45833 6.52841 6.65454
6.69333 6.78810 6.86775 7.05834 7.23118 7.34319 7.43988 7.60854
7.76381 7.85918 8.12006 8.49742 9.31156 9.94835 10.45555 11.38519
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.022505 B = 0.002139 C = 0.002021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1243.868883 B =13085.838701 C =13847.954419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.055 4.055
3 C 0.020 3.980
4 C -0.176 4.176
5 C 0.000 4.000
6 C 0.600 3.400
7 O -0.541 6.541
8 N -0.593 5.593
9 C 0.112 3.888
10 C -0.127 4.127
11 C -0.087 4.087
12 C -0.130 4.130
13 C 0.153 3.847
14 N -0.604 5.604
15 C 0.164 3.836
16 C -0.250 4.250
17 H 0.066 0.934
18 C -0.001 4.001
19 N -0.909 5.909
20 Si 0.904 3.096
21 H -0.289 1.289
22 H -0.291 1.291
23 H -0.280 1.280
24 C -0.125 4.125
25 C 0.073 3.927
26 N -0.256 5.256
27 N -0.383 5.383
28 H 0.443 0.557
29 H 0.063 0.937
30 H 0.064 0.936
31 H 0.054 0.946
32 H 0.092 0.908
33 H 0.076 0.924
34 H 0.162 0.838
35 H 0.067 0.933
36 H 0.089 0.911
37 H 0.064 0.936
38 H 0.076 0.924
39 H 0.067 0.933
40 H 0.051 0.949
41 H 0.061 0.939
42 H 0.039 0.961
43 H 0.035 0.965
44 H 0.015 0.985
45 H 0.055 0.945
46 H -0.009 1.009
47 H 0.251 0.749
48 H 0.062 0.938
49 H 0.078 0.922
50 H 0.135 0.865
51 H 0.063 0.937
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.230 -17.805 -2.052 28.555
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.094 4.094
3 C -0.106 4.106
4 C -0.204 4.204
5 C -0.160 4.160
6 C 0.386 3.614
7 O -0.416 6.416
8 N -0.326 5.326
9 C -0.010 4.010
10 C -0.166 4.166
11 C -0.106 4.106
12 C -0.170 4.170
13 C 0.026 3.974
14 N -0.327 5.327
15 C 0.020 3.980
16 C -0.380 4.380
17 H 0.084 0.916
18 C -0.199 4.199
19 N -0.555 5.555
20 Si 0.734 3.266
21 H -0.216 1.216
22 H -0.218 1.218
23 H -0.205 1.205
24 C -0.163 4.163
25 C -0.050 4.050
26 N -0.091 5.091
27 N -0.096 5.096
28 H 0.288 0.712
29 H 0.082 0.918
30 H 0.083 0.917
31 H 0.073 0.927
32 H 0.111 0.889
33 H 0.095 0.905
34 H 0.179 0.821
35 H 0.086 0.914
36 H 0.107 0.893
37 H 0.083 0.917
38 H 0.094 0.906
39 H 0.085 0.915
40 H 0.070 0.930
41 H 0.080 0.920
42 H 0.058 0.942
43 H 0.053 0.947
44 H 0.034 0.966
45 H 0.074 0.926
46 H 0.009 0.991
47 H 0.062 0.938
48 H 0.080 0.920
49 H 0.096 0.904
50 H 0.151 0.849
51 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges -21.858 -17.171 -1.794 27.854
hybrid contribution 0.460 0.447 -0.153 0.659
sum -21.398 -16.725 -1.947 27.228
Atomic orbital electron populations
1.21788 0.93932 1.02339 1.02702 1.20141 0.96488 0.88644 1.04150
1.21458 1.05012 0.96797 0.87315 1.21478 1.06785 0.92258 0.99861
1.21966 1.07364 0.96901 0.89793 1.16995 0.77542 0.80913 0.85933
1.90773 1.55036 1.81487 1.14346 1.48037 1.58651 1.17055 1.08812
1.21697 0.95352 0.87249 0.96749 1.21978 0.94966 1.02332 0.97297
1.21193 0.98636 0.96895 0.93864 1.22238 0.92712 1.01340 1.00704
1.20869 0.87047 0.97276 0.92236 1.43962 1.05523 1.04811 1.78381
1.20742 0.92110 0.88308 0.96885 1.19215 0.92636 0.83576 1.42554
0.91604 1.25081 0.97539 0.97247 1.00003 1.70059 1.04322 1.30355
1.50754 0.86261 0.78489 0.84414 0.77420 1.21569 1.21779 1.20515
1.21974 0.94908 0.98185 1.01272 1.22825 0.97223 1.06018 0.78921
1.73212 1.18872 1.02173 1.14863 1.43555 1.47273 1.08857 1.09929
0.71220 0.91829 0.91671 0.92664 0.88930 0.90520 0.82060 0.91431
0.89272 0.91722 0.90577 0.91487 0.92980 0.91985 0.94248 0.94660
0.96648 0.92619 0.99053 0.93837 0.91961 0.90350 0.84900 0.91822
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.54 9.89 37.16 0.37 -0.18 16
2 C -0.06 -0.22 6.49 -27.89 -0.18 -0.40 16
3 C 0.02 0.15 6.48 -82.21 -0.53 -0.39 16
4 C -0.18 -1.78 10.73 -39.36 -0.42 -2.20 16
5 C 0.00 0.00 6.90 -82.76 -0.57 -0.57 16
6 C 0.60 8.76 7.70 -12.39 -0.10 8.66 16
7 O -0.54 -9.21 16.36 5.30 0.09 -9.12 16
8 N -0.59 -7.98 2.98 -173.70 -0.52 -8.50 16
9 C 0.11 1.44 6.41 -3.71 -0.02 1.42 16
10 C -0.13 -1.75 5.36 -26.61 -0.14 -1.89 16
11 C -0.09 -1.26 2.15 -90.58 -0.19 -1.46 16
12 C -0.13 -2.44 5.01 -26.73 -0.13 -2.58 16
13 C 0.15 3.16 5.47 -4.04 -0.02 3.14 16
14 N -0.60 -15.58 2.92 -181.12 -0.53 -16.11 16
15 C 0.16 4.18 9.03 59.85 0.54 4.72 16
16 C -0.25 -7.00 9.64 -15.06 -0.15 -7.15 16
17 H 0.07 1.81 7.85 -52.48 -0.41 1.40 16
18 C 0.00 -0.02 5.10 -17.43 -0.09 -0.11 16
19 N -0.91 -27.06 10.74 55.49 0.60 -26.46 16
20 Si 0.90 22.21 29.57 -169.99 -5.03 17.19 16
21 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16
22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16
23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16
24 C -0.13 -1.67 5.15 -26.61 -0.14 -1.81 16
25 C 0.07 0.89 6.33 -3.55 -0.02 0.86 16
26 N -0.26 -2.69 8.58 33.42 0.29 -2.40 16
27 N -0.38 -2.76 6.83 33.50 0.23 -2.53 16
28 H 0.44 1.62 8.96 -190.44 -1.71 -0.09 16
29 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16
30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16
31 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16
32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16
33 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16
34 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16
35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
36 H 0.09 1.20 7.03 -51.93 -0.37 0.84 16
37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16
38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16
39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16
40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16
41 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16
42 H 0.04 0.80 8.04 -51.93 -0.42 0.38 16
43 H 0.04 0.67 6.32 -51.93 -0.33 0.34 16
44 H 0.02 0.41 7.81 -51.93 -0.41 0.01 16
45 H 0.06 1.53 6.79 -51.93 -0.35 1.17 16
46 H -0.01 -0.20 7.95 -51.93 -0.41 -0.61 16
47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16
48 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
49 H 0.08 1.02 6.50 -51.93 -0.34 0.69 16
50 H 0.13 1.55 3.74 -113.53 -0.42 1.13 16
51 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16
LS Contribution 400.35 15.07 6.03 6.03
Total: -1.00 -34.15 400.35 -10.86 -45.01
By element:
Atomic # 1 Polarization: 7.03 SS G_CDS: -10.22 Total: -3.18 kcal
Atomic # 6 Polarization: 1.88 SS G_CDS: -1.81 Total: 0.08 kcal
Atomic # 7 Polarization: -56.07 SS G_CDS: 0.06 Total: -56.01 kcal
Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.19 kcal
Total LS contribution 6.03 Total: 6.03 kcal
Total: -34.15 -10.86 -45.01 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568435545.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 99.761 kcal
(2) G-P(sol) polarization free energy of solvation -34.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.863 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.747 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.20 seconds