Wall clock time and date at job start Tue Mar 31 2020 18:11:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.50695 * 109.47200 * 2 1
4 4 C 1.35367 * 126.38811 * 275.29836 * 3 2 1
5 5 C 1.41506 * 105.50081 * 180.14016 * 4 3 2
6 6 C 1.47709 * 126.51410 * 179.84689 * 5 4 3
7 7 O 1.21576 * 120.00149 * 6.03476 * 6 5 4
8 8 N 1.34777 * 119.99905 * 186.04631 * 6 5 4
9 9 C 1.46931 * 120.63226 * 175.33703 * 8 6 5
10 10 C 1.53192 * 108.88861 * 233.66794 * 9 8 6
11 11 C 1.53034 * 109.31447 * 305.28955 * 10 9 8
12 12 C 1.52999 * 109.46312 * 181.37321 * 11 10 9
13 13 C 1.52996 * 109.47317 * 175.00053 * 12 11 10
14 14 N 1.46505 * 109.46809 * 179.97438 * 13 12 11
15 15 C 1.46501 * 120.00138 * 269.99660 * 14 13 12
16 16 C 1.36936 * 119.99930 * 90.00325 * 14 13 12
17 17 H 1.08006 * 120.00009 * 25.19617 * 16 14 13
18 18 C 1.38810 * 120.00276 * 205.19567 * 16 14 13
19 19 N 1.31623 * 119.99488 * 10.11217 * 18 16 14
20 20 Si 1.86793 * 120.00351 * 190.11283 * 18 16 14
21 21 H 1.48494 * 109.47465 * 89.99889 * 20 18 16
22 22 H 1.48505 * 109.46998 * 210.00359 * 20 18 16
23 23 H 1.48504 * 109.47048 * 330.00018 * 20 18 16
24 24 C 1.53042 * 109.53690 * 61.37096 * 11 10 9
25 25 C 1.47207 * 120.81399 * 355.46330 * 8 6 5
26 26 N 1.31809 * 106.96576 * 359.58576 * 5 4 3
27 27 N 1.28470 * 110.07374 * 0.25858 * 26 5 4
28 28 H 0.96995 * 124.88439 * 180.02562 * 27 26 5
29 29 H 1.09002 * 109.47442 * 59.99820 * 1 2 3
30 30 H 1.09005 * 109.47510 * 179.97438 * 1 2 3
31 31 H 1.09006 * 109.47020 * 299.99820 * 1 2 3
32 32 H 1.08998 * 109.47214 * 239.99860 * 2 1 3
33 33 H 1.09002 * 109.46967 * 120.00417 * 2 1 3
34 34 H 1.07999 * 127.24920 * 359.97438 * 4 3 2
35 35 H 1.08995 * 109.58532 * 113.80748 * 9 8 6
36 36 H 1.08999 * 109.57885 * 353.52366 * 9 8 6
37 37 H 1.09000 * 109.49534 * 65.24462 * 10 9 8
38 38 H 1.09001 * 109.49502 * 185.30738 * 10 9 8
39 39 H 1.09000 * 109.46439 * 301.34821 * 11 10 9
40 40 H 1.09006 * 109.47202 * 295.00225 * 12 11 10
41 41 H 1.09002 * 109.46947 * 55.00079 * 12 11 10
42 42 H 1.08995 * 109.47263 * 299.99736 * 13 12 11
43 43 H 1.08995 * 109.47294 * 60.00459 * 13 12 11
44 44 H 1.09002 * 109.46821 * 86.00573 * 15 14 13
45 45 H 1.09002 * 109.47377 * 206.00077 * 15 14 13
46 46 H 1.08996 * 109.47591 * 326.00353 * 15 14 13
47 47 H 0.97006 * 119.99618 * 179.97438 * 19 18 16
48 48 H 1.08990 * 109.50294 * 58.58078 * 24 11 10
49 49 H 1.09007 * 109.49917 * 178.68494 * 24 11 10
50 50 H 1.09002 * 109.53324 * 6.54568 * 25 8 6
51 51 H 1.09002 * 109.68091 * 246.23959 * 25 8 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 6 2.2051 2.2114 -1.0851
5 6 2.6929 3.4412 -0.5830
6 6 3.0426 4.6375 -1.3758
7 8 2.8172 4.6624 -2.5702
8 7 3.6118 5.7013 -0.7751
9 6 4.0584 6.8569 -1.5650
10 6 5.5276 7.1428 -1.2387
11 6 5.6850 7.3200 0.2732
12 6 7.1452 7.6396 0.5996
13 6 7.2800 7.9394 2.0939
14 7 8.6783 8.2448 2.4065
15 6 9.5952 7.1684 2.7898
16 6 9.1283 9.5364 2.3405
17 1 8.4363 10.3564 2.4649
18 6 10.4737 9.7920 2.1138
19 7 11.2801 8.8118 1.7656
20 14 11.1396 11.5270 2.3028
21 1 11.5915 11.7341 3.7021
22 1 12.2858 11.7206 1.3787
23 1 10.0709 12.5055 1.9778
24 6 5.2746 6.0291 0.9853
25 6 3.8024 5.7306 0.6843
26 7 2.7704 3.3183 0.7270
27 7 2.3882 2.1445 1.0831
28 1 2.3592 1.8244 1.9982
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 -0.3633 0.5138 0.8900
32 1 1.8933 -0.5138 -0.8900
33 1 1.8933 -0.5139 0.8900
34 1 2.0139 1.9564 -2.1169
35 1 3.4522 7.7272 -1.3140
36 1 3.9565 6.6346 -2.6272
37 1 6.1436 6.3081 -1.5733
38 1 5.8425 8.0541 -1.7471
39 1 5.0498 8.1389 0.6110
40 1 7.7706 6.7845 0.3427
41 1 7.4642 8.5089 0.0245
42 1 6.6548 8.7945 2.3507
43 1 6.9610 7.0702 2.6690
44 1 10.0197 6.7163 1.8934
45 1 10.3969 7.5760 3.4056
46 1 9.0513 6.4120 3.3555
47 1 12.2203 8.9905 1.6068
48 1 5.8929 5.2050 0.6298
49 1 5.4091 6.1481 2.0605
50 1 3.5321 4.7628 1.1066
51 1 3.1752 6.5078 1.1209
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001568435545.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:11:51
Heat of formation + Delta-G solvation = 34.468823 kcal
Electronic energy + Delta-G solvation = -28966.381862 eV
Core-core repulsion = 25094.974565 eV
Total energy + Delta-G solvation = -3871.407297 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-43.77434 -41.00878 -38.98162 -37.46515 -35.45030 -34.98157 -33.37189 -32.87588
-31.96544 -30.36817 -30.09722 -27.91589 -26.92113 -25.13821 -24.77411 -24.13728
-23.42072 -22.04652 -21.88097 -21.15102 -19.87571 -18.92047 -18.70281 -17.70491
-16.99746 -16.95515 -16.78154 -16.02838 -15.71889 -15.59172 -15.34164 -15.24949
-15.04057 -14.95886 -14.77087 -14.31369 -14.20271 -14.16450 -14.05872 -13.57322
-13.34336 -13.20997 -12.86258 -12.79721 -12.62895 -12.49544 -12.40560 -12.28653
-12.12722 -12.04581 -12.01154 -11.85023 -11.62832 -11.47040 -11.35155 -11.14380
-10.68292 -10.60065 -10.47189 -9.97875 -9.66498 -8.71570 -7.83620 -5.31012
0.44584 1.10019 1.46324 1.47057 1.56135 1.73867 2.12748 2.29835
2.51861 3.24403 3.31737 3.66055 3.67242 3.78611 3.91114 3.97639
4.04137 4.15920 4.26295 4.37222 4.43286 4.43511 4.51439 4.57169
4.61634 4.70635 4.76441 4.81123 4.82193 4.89279 4.89512 4.95138
5.04094 5.08664 5.10121 5.11717 5.20636 5.23102 5.27567 5.32536
5.37587 5.42486 5.50068 5.58446 5.64492 5.66865 5.72392 6.12322
6.33083 6.37744 6.83283 7.08890 7.17432 7.90403 8.35177 9.22092
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.022505 B = 0.002139 C = 0.002021
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1243.868883 B =13085.838701 C =13847.954419
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.053 4.053
3 C 0.042 3.958
4 C -0.200 4.200
5 C -0.030 4.030
6 C 0.594 3.406
7 O -0.576 6.576
8 N -0.595 5.595
9 C 0.115 3.885
10 C -0.122 4.122
11 C -0.076 4.076
12 C -0.114 4.114
13 C 0.150 3.850
14 N -0.622 5.622
15 C 0.178 3.822
16 C -0.258 4.258
17 H 0.070 0.930
18 C -0.058 4.058
19 N -0.942 5.942
20 Si 0.969 3.031
21 H -0.285 1.285
22 H -0.297 1.297
23 H -0.267 1.267
24 C -0.118 4.118
25 C 0.077 3.923
26 N -0.263 5.263
27 N -0.365 5.365
28 H 0.461 0.539
29 H 0.050 0.950
30 H 0.080 0.920
31 H 0.054 0.946
32 H 0.100 0.900
33 H 0.101 0.899
34 H 0.160 0.840
35 H 0.086 0.914
36 H 0.080 0.920
37 H 0.048 0.952
38 H 0.079 0.921
39 H 0.081 0.919
40 H 0.029 0.971
41 H 0.033 0.967
42 H 0.047 0.953
43 H 0.059 0.941
44 H -0.010 1.010
45 H 0.028 0.972
46 H 0.025 0.975
47 H 0.247 0.753
48 H 0.047 0.953
49 H 0.087 0.913
50 H 0.143 0.857
51 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.273 -18.627 -0.501 30.601
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.091 4.091
3 C -0.085 4.085
4 C -0.228 4.228
5 C -0.189 4.189
6 C 0.381 3.619
7 O -0.455 6.455
8 N -0.327 5.327
9 C -0.007 4.007
10 C -0.160 4.160
11 C -0.095 4.095
12 C -0.154 4.154
13 C 0.025 3.975
14 N -0.346 5.346
15 C 0.032 3.968
16 C -0.388 4.388
17 H 0.088 0.912
18 C -0.252 4.252
19 N -0.589 5.589
20 Si 0.797 3.203
21 H -0.212 1.212
22 H -0.223 1.223
23 H -0.192 1.192
24 C -0.157 4.157
25 C -0.045 4.045
26 N -0.100 5.100
27 N -0.081 5.081
28 H 0.309 0.691
29 H 0.069 0.931
30 H 0.099 0.901
31 H 0.073 0.927
32 H 0.119 0.881
33 H 0.120 0.880
34 H 0.178 0.822
35 H 0.104 0.896
36 H 0.098 0.902
37 H 0.067 0.933
38 H 0.098 0.902
39 H 0.099 0.901
40 H 0.048 0.952
41 H 0.052 0.948
42 H 0.066 0.934
43 H 0.077 0.923
44 H 0.008 0.992
45 H 0.047 0.953
46 H 0.044 0.956
47 H 0.056 0.944
48 H 0.066 0.934
49 H 0.106 0.894
50 H 0.159 0.841
51 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -23.935 -17.991 -0.205 29.943
hybrid contribution 1.030 0.600 -0.587 1.329
sum -22.905 -17.391 -0.792 28.770
Atomic orbital electron populations
1.21779 0.93560 1.03207 1.02092 1.20305 0.96608 0.86426 1.05806
1.21849 1.02768 0.97682 0.86168 1.21644 1.07979 0.92308 1.00874
1.21781 1.09582 0.96914 0.90593 1.17370 0.77107 0.81611 0.85785
1.90736 1.56673 1.82252 1.15874 1.48154 1.58197 1.16893 1.09418
1.21666 0.94784 0.87872 0.96422 1.21896 0.95480 1.01872 0.96745
1.21083 0.95679 0.98177 0.94576 1.21988 0.95255 0.99120 0.99059
1.21059 0.84502 0.98573 0.93397 1.44252 1.07250 1.04265 1.78803
1.20500 0.91913 0.88736 0.95623 1.19553 0.92929 0.84779 1.41559
0.91200 1.25868 0.97973 1.00990 1.00394 1.70232 1.04195 1.32265
1.52205 0.85231 0.77688 0.80219 0.77115 1.21158 1.22342 1.19217
1.21904 0.95613 0.96706 1.01435 1.22894 0.96304 1.07158 0.78141
1.73026 1.19350 1.03641 1.13939 1.43628 1.45602 1.07897 1.10993
0.69092 0.93096 0.90089 0.92661 0.88138 0.88022 0.82227 0.89592
0.90153 0.93345 0.90238 0.90055 0.95171 0.94765 0.93445 0.92255
0.99218 0.95309 0.95637 0.94405 0.93399 0.89439 0.84080 0.90285
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.71 9.89 71.98 0.71 0.00 16
2 C -0.05 -0.25 6.49 29.85 0.19 -0.06 16
3 C 0.04 0.53 6.48 41.40 0.27 0.79 16
4 C -0.20 -3.95 10.73 22.41 0.24 -3.71 16
5 C -0.03 -0.73 6.90 42.46 0.29 -0.44 16
6 C 0.59 17.49 7.70 86.75 0.67 18.15 16
7 O -0.58 -20.29 16.36 -3.96 -0.06 -20.36 16
8 N -0.60 -15.65 2.98 -821.72 -2.45 -18.11 16
9 C 0.11 2.90 6.41 86.36 0.55 3.46 16
10 C -0.12 -3.31 5.36 30.67 0.16 -3.15 16
11 C -0.08 -2.13 2.15 -10.77 -0.02 -2.15 16
12 C -0.11 -4.29 5.01 30.59 0.15 -4.14 16
13 C 0.15 6.02 5.47 86.38 0.47 6.49 16
14 N -0.62 -31.97 2.92 -726.94 -2.12 -34.09 16
15 C 0.18 9.08 9.03 127.77 1.15 10.23 16
16 C -0.26 -14.41 9.64 84.03 0.81 -13.60 16
17 H 0.07 3.78 7.85 -2.91 -0.02 3.76 16
18 C -0.06 -3.31 5.10 84.86 0.43 -2.88 16
19 N -0.94 -57.25 10.74 21.65 0.23 -57.02 16
20 Si 0.97 45.91 29.57 68.60 2.03 47.93 16
21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16
22 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16
23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16
24 C -0.12 -2.97 5.15 30.67 0.16 -2.81 16
25 C 0.08 1.73 6.33 86.31 0.55 2.28 16
26 N -0.26 -5.10 8.58 -48.17 -0.41 -5.52 16
27 N -0.37 -4.39 6.83 -47.93 -0.33 -4.71 16
28 H 0.46 1.90 8.96 -220.00 -1.97 -0.07 16
29 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16
30 H 0.08 0.17 8.14 -2.38 -0.02 0.15 16
31 H 0.05 0.27 8.14 -2.38 -0.02 0.25 16
32 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16
33 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16
34 H 0.16 3.06 8.06 -2.91 -0.02 3.03 16
35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16
36 H 0.08 2.20 7.03 -2.39 -0.02 2.19 16
37 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16
38 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16
39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16
40 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16
41 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16
42 H 0.05 1.83 8.04 -2.39 -0.02 1.81 16
43 H 0.06 2.10 6.32 -2.39 -0.02 2.08 16
44 H -0.01 -0.59 7.81 -2.39 -0.02 -0.60 16
45 H 0.03 1.59 6.79 -2.39 -0.02 1.57 16
46 H 0.03 1.10 7.95 -2.39 -0.02 1.08 16
47 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16
48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16
49 H 0.09 2.05 6.50 -2.38 -0.02 2.03 16
50 H 0.14 3.03 3.74 -82.07 -0.31 2.72 16
51 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16
Total: -1.00 -75.43 400.35 2.33 -73.10
By element:
Atomic # 1 Polarization: 11.64 SS G_CDS: -1.35 Total: 10.29 kcal
Atomic # 6 Polarization: 1.69 SS G_CDS: 6.80 Total: 8.48 kcal
Atomic # 7 Polarization: -114.37 SS G_CDS: -5.08 Total: -119.45 kcal
Atomic # 8 Polarization: -20.29 SS G_CDS: -0.06 Total: -20.36 kcal
Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.93 kcal
Total: -75.43 2.33 -73.10 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001568435545.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 107.571 kcal
(2) G-P(sol) polarization free energy of solvation -75.434 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.331 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.102 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.469 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds