Wall clock time and date at job start Tue Mar 31 2020 20:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46794 * 2 1 4 4 C 1.53003 * 109.47322 * 240.00369 * 2 1 3 5 5 C 1.50700 * 109.47022 * 119.99990 * 2 1 3 6 6 C 1.39668 * 126.06939 * 75.00422 * 5 2 1 7 7 C 1.38405 * 105.36368 * 180.02562 * 6 5 2 8 8 C 1.47159 * 126.88892 * 180.02562 * 7 6 5 9 9 O 1.21633 * 119.99816 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00348 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 12 12 H 1.08991 * 110.05689 * 326.41653 * 11 10 8 13 13 C 1.53880 * 110.03054 * 87.83161 * 11 10 8 14 14 C 1.54270 * 106.59732 * 119.28454 * 13 11 10 15 15 C 1.54890 * 104.19464 * 23.61168 * 14 13 11 16 16 C 1.54268 * 110.03123 * 204.99561 * 11 10 8 17 17 H 1.08996 * 110.48666 * 335.91621 * 16 11 10 18 18 C 1.53002 * 110.48619 * 98.43131 * 16 11 10 19 19 N 1.46499 * 109.47337 * 184.99898 * 18 16 11 20 20 C 1.36935 * 119.99938 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00083 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99632 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99535 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00576 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00326 * 24 22 20 27 27 H 1.48498 * 109.47210 * 150.00037 * 24 22 20 28 28 N 1.36602 * 106.22770 * 0.26135 * 7 6 5 29 29 H 0.96998 * 125.19108 * 179.73352 * 28 7 6 30 30 N 1.28450 * 109.61831 * 359.55580 * 28 7 6 31 31 H 1.08995 * 109.47316 * 299.99496 * 1 2 3 32 32 H 1.08998 * 109.47178 * 60.00010 * 1 2 3 33 33 H 1.08997 * 109.46628 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46913 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47250 * 299.99946 * 3 2 1 36 36 H 1.09002 * 109.46931 * 60.00565 * 3 2 1 37 37 H 1.09001 * 109.46787 * 299.99772 * 4 2 1 38 38 H 1.08998 * 109.47304 * 59.99697 * 4 2 1 39 39 H 1.08996 * 109.46954 * 180.02562 * 4 2 1 40 40 H 1.08000 * 127.31881 * 0.05789 * 6 5 2 41 41 H 0.97006 * 119.99569 * 359.97438 * 10 8 7 42 42 H 1.08995 * 110.03068 * 238.56731 * 13 11 10 43 43 H 1.08998 * 110.03560 * 359.95298 * 13 11 10 44 44 H 1.08999 * 110.48014 * 142.28797 * 14 13 11 45 45 H 1.08997 * 110.48883 * 264.92785 * 14 13 11 46 46 H 1.09001 * 110.74926 * 203.74241 * 15 14 13 47 47 H 1.08993 * 110.76040 * 80.37090 * 15 14 13 48 48 H 1.08993 * 109.47262 * 64.99215 * 18 16 11 49 49 H 1.09005 * 109.46767 * 304.99830 * 18 16 11 50 50 H 0.96999 * 119.99984 * 0.02562 * 19 18 16 51 51 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 2.0310 -2.0911 1.4410 7 6 2.5814 -2.2709 2.6981 8 6 2.8034 -3.5504 3.3904 9 8 2.4911 -4.5954 2.8520 10 7 3.3527 -3.5643 4.6211 11 6 3.5732 -4.8379 5.3105 12 1 2.7861 -5.5453 5.0496 13 6 4.9477 -5.4137 4.9272 14 6 5.7606 -5.5207 6.2340 15 6 4.6846 -5.5955 7.3456 16 6 3.5988 -4.6151 6.8368 17 1 3.8731 -3.5857 7.0675 18 6 2.2395 -4.9561 7.4507 19 7 2.2510 -4.6244 8.8776 20 6 1.1354 -4.8443 9.6406 21 1 0.2469 -5.2618 9.1904 22 6 1.1461 -4.5294 10.9925 23 7 0.0739 -4.7412 11.7260 24 14 2.6826 -3.8066 11.7711 25 1 3.5462 -4.9049 12.2740 26 1 3.4264 -3.0167 10.7572 27 1 2.2965 -2.9236 12.9008 28 7 2.8723 -1.0223 3.1696 29 1 3.2671 -0.8293 4.0343 30 7 2.5466 -0.1431 2.2916 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8901 37 1 1.6768 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1393 39 1 3.1300 -0.7215 -1.2490 40 1 1.6764 -2.8560 0.7660 41 1 3.6021 -2.7309 5.0503 42 1 4.8276 -6.4006 4.4803 43 1 5.4504 -4.7460 4.2276 44 1 6.3698 -6.4246 6.2312 45 1 6.3863 -4.6383 6.3674 46 1 5.0912 -5.2603 8.2998 47 1 4.2844 -6.6059 7.4285 48 1 2.0417 -6.0208 7.3267 49 1 1.4603 -4.3811 6.9502 50 1 3.0486 -4.2484 9.2817 51 1 0.0815 -4.5216 12.6708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568530742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:10 Heat of formation + Delta-G solvation = 24.726423 kcal Electronic energy + Delta-G solvation = -28840.987680 eV Core-core repulsion = 24969.157920 eV Total energy + Delta-G solvation = -3871.829759 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.86189 -40.03755 -38.09790 -37.21589 -34.76170 -33.84211 -31.60730 -31.29560 -31.03732 -29.14077 -27.93219 -27.51919 -27.39138 -24.81999 -23.56565 -22.86711 -21.86517 -21.11001 -20.46238 -20.15828 -19.02671 -18.67445 -17.57909 -16.70604 -16.05517 -15.98108 -15.35544 -15.20481 -14.66221 -14.52533 -14.48271 -14.15982 -14.06824 -13.98187 -13.73900 -13.58703 -13.33549 -12.71130 -12.57539 -12.44123 -12.42450 -12.01103 -11.92551 -11.77551 -11.63784 -11.38004 -11.29215 -11.18482 -11.04340 -10.90968 -10.77460 -10.66695 -10.57828 -10.50307 -10.22140 -10.12990 -9.63466 -9.46073 -9.38732 -9.16897 -8.93987 -7.27651 -5.80227 -3.16170 1.02548 2.29858 2.50824 2.82724 3.03361 3.31383 3.34270 3.40718 4.07368 4.33706 4.45755 4.53393 4.54728 4.62058 4.71375 4.84384 4.87083 5.01227 5.20772 5.23365 5.35413 5.36565 5.37765 5.45155 5.46072 5.51316 5.52560 5.56546 5.60543 5.62634 5.64253 5.70458 5.76258 5.77967 5.85425 5.88376 5.98045 6.03552 6.05900 6.07091 6.22014 6.25569 6.34492 6.36203 6.60049 6.65326 6.71035 7.20198 7.71680 7.90997 7.95882 8.38570 9.17315 9.89271 10.08978 11.38242 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.002486 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.466462 B =11261.929256 C =12372.825833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.017 3.983 3 C -0.135 4.135 4 C -0.139 4.139 5 C 0.038 3.962 6 C -0.147 4.147 7 C -0.035 4.035 8 C 0.590 3.410 9 O -0.519 6.519 10 N -0.717 5.717 11 C 0.148 3.852 12 H 0.100 0.900 13 C -0.132 4.132 14 C -0.125 4.125 15 C -0.114 4.114 16 C -0.107 4.107 17 H 0.078 0.922 18 C 0.165 3.835 19 N -0.754 5.754 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.004 3.996 23 N -0.934 5.934 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.291 1.291 28 N -0.379 5.379 29 H 0.444 0.556 30 N -0.264 5.264 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.163 0.837 41 H 0.394 0.606 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.031 0.969 49 H 0.025 0.975 50 H 0.360 0.640 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.991 8.611 -24.653 27.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.015 3.985 3 C -0.193 4.193 4 C -0.197 4.197 5 C -0.120 4.120 6 C -0.176 4.176 7 C -0.163 4.163 8 C 0.375 3.625 9 O -0.393 6.393 10 N -0.367 5.367 11 C 0.043 3.957 12 H 0.118 0.882 13 C -0.170 4.170 14 C -0.162 4.162 15 C -0.151 4.151 16 C -0.127 4.127 17 H 0.096 0.904 18 C 0.038 3.962 19 N -0.400 5.400 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.192 4.192 23 N -0.582 5.582 24 Si 0.716 3.284 25 H -0.210 1.210 26 H -0.205 1.205 27 H -0.217 1.217 28 N -0.095 5.095 29 H 0.289 0.711 30 N -0.097 5.097 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.180 0.820 41 H 0.228 0.772 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.095 0.905 48 H 0.049 0.951 49 H 0.043 0.957 50 H 0.193 0.807 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.791 8.751 -24.514 27.809 hybrid contribution 1.156 0.300 1.251 1.730 sum 10.947 9.051 -23.262 27.256 Atomic orbital electron populations 1.21881 0.93193 1.02467 1.02149 1.18916 0.95494 0.94803 0.89293 1.21773 1.01221 0.94297 1.01973 1.21885 1.01324 1.00555 0.95951 1.21915 1.02954 0.91614 0.95529 1.21982 1.03743 0.96523 0.95391 1.21789 1.10276 0.86522 0.97740 1.16987 0.77607 0.86759 0.81143 1.90848 1.50884 1.31730 1.65844 1.46080 1.63328 1.10276 1.17041 1.21771 0.98093 0.84579 0.91215 0.88195 1.22553 0.95069 1.01588 0.97826 1.22385 0.97687 1.01595 0.94580 1.22496 0.94724 1.00004 0.97916 1.22505 0.97664 1.00236 0.92249 0.90401 1.20666 0.92409 0.98023 0.85135 1.42665 1.14504 1.77903 1.04883 1.19059 0.92084 1.35505 0.90760 0.89251 1.24685 0.96935 1.01367 0.96223 1.69707 1.27734 1.53992 1.06718 0.86535 0.83761 0.79098 0.79008 1.21023 1.20500 1.21745 1.43624 1.46603 1.02901 1.16381 0.71117 1.73085 1.16668 1.19857 1.00050 0.92378 0.91868 0.92119 0.92543 0.92409 0.91970 0.92028 0.91841 0.92425 0.81971 0.77204 0.90909 0.91644 0.91531 0.91890 0.91096 0.90499 0.95075 0.95676 0.80712 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.46 37.16 0.31 -0.70 16 2 C 0.02 0.13 0.96 -155.66 -0.15 -0.02 16 3 C -0.14 -1.01 8.04 37.16 0.30 -0.71 16 4 C -0.14 -0.92 8.20 37.16 0.30 -0.61 16 5 C 0.04 0.39 5.65 -82.47 -0.47 -0.07 16 6 C -0.15 -1.62 10.12 -38.99 -0.39 -2.01 16 7 C -0.03 -0.39 7.16 -82.06 -0.59 -0.98 16 8 C 0.59 7.47 7.80 -12.64 -0.10 7.37 16 9 O -0.52 -8.28 16.57 5.25 0.09 -8.20 16 10 N -0.72 -7.76 4.98 -53.88 -0.27 -8.03 16 11 C 0.15 1.81 2.82 -66.81 -0.19 1.62 16 12 H 0.10 1.42 7.26 -51.93 -0.38 1.04 16 13 C -0.13 -1.41 6.59 -25.61 -0.17 -1.58 16 14 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 15 C -0.11 -1.45 6.19 -24.74 -0.15 -1.61 16 16 C -0.11 -1.47 2.59 -88.96 -0.23 -1.70 16 17 H 0.08 1.01 7.74 -51.93 -0.40 0.61 16 18 C 0.16 3.06 5.54 -4.04 -0.02 3.04 16 19 N -0.75 -17.36 5.30 -59.91 -0.32 -17.67 16 20 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 23 N -0.93 -29.30 13.97 55.49 0.78 -28.52 16 24 Si 0.89 21.74 27.74 -169.99 -4.71 17.03 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 28 N -0.38 -3.60 6.85 33.48 0.23 -3.37 16 29 H 0.44 2.91 8.22 -190.45 -1.57 1.35 16 30 N -0.26 -2.84 11.48 33.64 0.39 -2.45 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 37 H 0.06 0.40 7.60 -51.93 -0.39 0.00 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.16 1.64 7.79 -52.49 -0.41 1.24 16 41 H 0.39 3.28 7.54 -40.82 -0.31 2.98 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.67 7.92 -51.93 -0.41 0.26 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.08 1.04 7.96 -51.93 -0.41 0.63 16 48 H 0.03 0.60 8.02 -51.93 -0.42 0.18 16 49 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.36 7.99 5.50 -40.82 -0.22 7.77 16 51 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 LS Contribution 408.23 15.07 6.15 6.15 Total: -1.00 -34.17 408.23 -9.64 -43.81 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -10.01 Total: 7.67 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -1.97 Total: -6.42 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: 0.80 Total: -60.05 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.17 -9.64 -43.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568530742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.537 kcal (2) G-P(sol) polarization free energy of solvation -34.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds