Wall clock time and date at job start Tue Mar 31 2020 20:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46794 * 2 1 4 4 C 1.53003 * 109.47322 * 240.00369 * 2 1 3 5 5 C 1.50700 * 109.47022 * 119.99990 * 2 1 3 6 6 C 1.39668 * 126.06939 * 75.00422 * 5 2 1 7 7 C 1.38405 * 105.36368 * 180.02562 * 6 5 2 8 8 C 1.47159 * 126.88892 * 180.02562 * 7 6 5 9 9 O 1.21633 * 119.99816 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00348 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00266 * 179.97438 * 10 8 7 12 12 H 1.08991 * 110.05689 * 326.41653 * 11 10 8 13 13 C 1.53880 * 110.03054 * 87.83161 * 11 10 8 14 14 C 1.54270 * 106.59732 * 119.28454 * 13 11 10 15 15 C 1.54890 * 104.19464 * 23.61168 * 14 13 11 16 16 C 1.54268 * 110.03123 * 204.99561 * 11 10 8 17 17 H 1.08996 * 110.48666 * 335.91621 * 16 11 10 18 18 C 1.53002 * 110.48619 * 98.43131 * 16 11 10 19 19 N 1.46499 * 109.47337 * 184.99898 * 18 16 11 20 20 C 1.36935 * 119.99938 * 179.97438 * 19 18 16 21 21 H 1.07999 * 120.00083 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99632 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99535 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 120.00484 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47326 * 270.00576 * 24 22 20 26 26 H 1.48506 * 109.46545 * 30.00326 * 24 22 20 27 27 H 1.48498 * 109.47210 * 150.00037 * 24 22 20 28 28 N 1.36602 * 106.22770 * 0.26135 * 7 6 5 29 29 H 0.96998 * 125.19108 * 179.73352 * 28 7 6 30 30 N 1.28450 * 109.61831 * 359.55580 * 28 7 6 31 31 H 1.08995 * 109.47316 * 299.99496 * 1 2 3 32 32 H 1.08998 * 109.47178 * 60.00010 * 1 2 3 33 33 H 1.08997 * 109.46628 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46913 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47250 * 299.99946 * 3 2 1 36 36 H 1.09002 * 109.46931 * 60.00565 * 3 2 1 37 37 H 1.09001 * 109.46787 * 299.99772 * 4 2 1 38 38 H 1.08998 * 109.47304 * 59.99697 * 4 2 1 39 39 H 1.08996 * 109.46954 * 180.02562 * 4 2 1 40 40 H 1.08000 * 127.31881 * 0.05789 * 6 5 2 41 41 H 0.97006 * 119.99569 * 359.97438 * 10 8 7 42 42 H 1.08995 * 110.03068 * 238.56731 * 13 11 10 43 43 H 1.08998 * 110.03560 * 359.95298 * 13 11 10 44 44 H 1.08999 * 110.48014 * 142.28797 * 14 13 11 45 45 H 1.08997 * 110.48883 * 264.92785 * 14 13 11 46 46 H 1.09001 * 110.74926 * 203.74241 * 15 14 13 47 47 H 1.08993 * 110.76040 * 80.37090 * 15 14 13 48 48 H 1.08993 * 109.47262 * 64.99215 * 18 16 11 49 49 H 1.09005 * 109.46767 * 304.99830 * 18 16 11 50 50 H 0.96999 * 119.99984 * 0.02562 * 19 18 16 51 51 H 0.97005 * 119.99717 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 2.0310 -2.0911 1.4410 7 6 2.5814 -2.2709 2.6981 8 6 2.8034 -3.5504 3.3904 9 8 2.4911 -4.5954 2.8520 10 7 3.3527 -3.5643 4.6211 11 6 3.5732 -4.8379 5.3105 12 1 2.7861 -5.5453 5.0496 13 6 4.9477 -5.4137 4.9272 14 6 5.7606 -5.5207 6.2340 15 6 4.6846 -5.5955 7.3456 16 6 3.5988 -4.6151 6.8368 17 1 3.8731 -3.5857 7.0675 18 6 2.2395 -4.9561 7.4507 19 7 2.2510 -4.6244 8.8776 20 6 1.1354 -4.8443 9.6406 21 1 0.2469 -5.2618 9.1904 22 6 1.1461 -4.5294 10.9925 23 7 0.0739 -4.7412 11.7260 24 14 2.6826 -3.8066 11.7711 25 1 3.5462 -4.9049 12.2740 26 1 3.4264 -3.0167 10.7572 27 1 2.2965 -2.9236 12.9008 28 7 2.8723 -1.0223 3.1696 29 1 3.2671 -0.8293 4.0343 30 7 2.5466 -0.1431 2.2916 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3632 -1.0277 -0.0005 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8901 37 1 1.6768 -1.7489 -1.2493 38 1 1.6767 -0.2074 -2.1393 39 1 3.1300 -0.7215 -1.2490 40 1 1.6764 -2.8560 0.7660 41 1 3.6021 -2.7309 5.0503 42 1 4.8276 -6.4006 4.4803 43 1 5.4504 -4.7460 4.2276 44 1 6.3698 -6.4246 6.2312 45 1 6.3863 -4.6383 6.3674 46 1 5.0912 -5.2603 8.2998 47 1 4.2844 -6.6059 7.4285 48 1 2.0417 -6.0208 7.3267 49 1 1.4603 -4.3811 6.9502 50 1 3.0486 -4.2484 9.2817 51 1 0.0815 -4.5216 12.6708 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568530742.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:08 Heat of formation + Delta-G solvation = 1.672451 kcal Electronic energy + Delta-G solvation = -28841.987375 eV Core-core repulsion = 24969.157920 eV Total energy + Delta-G solvation = -3872.829455 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.67653 -41.06602 -39.20636 -37.84662 -36.51341 -34.92381 -33.58917 -32.12607 -31.85684 -30.64071 -28.82015 -28.06675 -28.03768 -26.39952 -24.61649 -23.77732 -23.42331 -22.04283 -21.53114 -21.10857 -20.19067 -19.51584 -19.29919 -17.76939 -16.94809 -16.86431 -16.53876 -16.33192 -16.09888 -15.66440 -15.49314 -15.27165 -15.00111 -14.87058 -14.73247 -14.66372 -14.47483 -14.41367 -13.82709 -13.48000 -13.09301 -13.00298 -12.95946 -12.84097 -12.51578 -12.48945 -12.31479 -12.20524 -12.00788 -12.00004 -11.88190 -11.87443 -11.74570 -11.62305 -11.50313 -11.45297 -11.24858 -10.99611 -10.41463 -10.16057 -10.08209 -9.33564 -8.04986 -5.39673 0.12472 1.35409 1.41373 1.48455 1.48878 1.72546 1.92262 2.07689 2.46870 3.25868 3.28071 3.34634 3.57192 3.62134 3.80988 3.84473 3.89618 4.13184 4.20263 4.32070 4.34031 4.41034 4.44516 4.48753 4.54994 4.56324 4.67307 4.69262 4.84760 4.86670 4.94640 4.95695 4.95915 5.02494 5.08099 5.08734 5.12043 5.15832 5.21461 5.26515 5.27309 5.46090 5.46929 5.47472 5.48288 5.51160 5.72263 5.93265 6.18306 6.31353 6.89133 6.97802 7.05368 7.79458 8.01617 9.16763 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013586 B = 0.002486 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2060.466462 B =11261.929256 C =12372.825833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.014 3.986 3 C -0.131 4.131 4 C -0.137 4.137 5 C 0.035 3.965 6 C -0.157 4.157 7 C -0.044 4.044 8 C 0.593 3.407 9 O -0.557 6.557 10 N -0.705 5.705 11 C 0.152 3.848 12 H 0.076 0.924 13 C -0.125 4.125 14 C -0.112 4.112 15 C -0.116 4.116 16 C -0.096 4.096 17 H 0.095 0.905 18 C 0.163 3.837 19 N -0.751 5.751 20 C -0.239 4.239 21 H 0.049 0.951 22 C -0.067 4.067 23 N -0.986 5.986 24 Si 0.961 3.039 25 H -0.276 1.276 26 H -0.245 1.245 27 H -0.297 1.297 28 N -0.367 5.367 29 H 0.456 0.544 30 N -0.274 5.274 31 H 0.045 0.955 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.075 0.925 36 H 0.050 0.950 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.052 0.948 40 H 0.165 0.835 41 H 0.409 0.591 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.063 0.937 48 H 0.020 0.980 49 H 0.013 0.987 50 H 0.369 0.631 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.876 10.223 -25.762 30.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 C -0.189 4.189 4 C -0.194 4.194 5 C -0.123 4.123 6 C -0.187 4.187 7 C -0.173 4.173 8 C 0.379 3.621 9 O -0.434 6.434 10 N -0.356 5.356 11 C 0.047 3.953 12 H 0.094 0.906 13 C -0.163 4.163 14 C -0.149 4.149 15 C -0.154 4.154 16 C -0.115 4.115 17 H 0.113 0.887 18 C 0.037 3.963 19 N -0.397 5.397 20 C -0.370 4.370 21 H 0.067 0.933 22 C -0.258 4.258 23 N -0.636 5.636 24 Si 0.787 3.213 25 H -0.202 1.202 26 H -0.169 1.169 27 H -0.224 1.224 28 N -0.085 5.085 29 H 0.303 0.697 30 N -0.107 5.107 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.183 0.817 41 H 0.245 0.755 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.038 0.962 49 H 0.031 0.969 50 H 0.203 0.797 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.722 10.392 -25.646 30.455 hybrid contribution 0.128 -0.246 1.537 1.562 sum 12.849 10.146 -24.109 29.142 Atomic orbital electron populations 1.21873 0.92753 1.02355 1.02518 1.19063 0.95820 0.95044 0.88878 1.21741 1.00826 0.93966 1.02335 1.21873 1.01031 1.00605 0.95928 1.22312 1.02461 0.91427 0.96096 1.22173 1.03804 0.97132 0.95554 1.21604 1.11173 0.86497 0.97991 1.17117 0.77013 0.86699 0.81308 1.90830 1.52630 1.33113 1.66861 1.45942 1.62588 1.10610 1.16458 1.21607 0.98651 0.84740 0.90261 0.90618 1.22490 0.93839 1.01540 0.98476 1.22324 0.96891 1.03160 0.92537 1.22503 0.95117 0.98856 0.98961 1.22365 0.94845 1.01487 0.92780 0.88701 1.20770 0.95408 0.97068 0.83046 1.42579 1.13180 1.77778 1.06194 1.19000 0.92363 1.34268 0.91364 0.93337 1.25609 1.00871 1.02504 0.96805 1.69912 1.30718 1.55957 1.07011 0.85326 0.79303 0.78486 0.78155 1.20152 1.16883 1.22404 1.43634 1.46050 1.02069 1.16733 0.69672 1.73083 1.17008 1.20140 1.00460 0.93554 0.89944 0.92485 0.93078 0.90568 0.93078 0.92119 0.90061 0.92859 0.81712 0.75462 0.91151 0.90632 0.90211 0.90096 0.91067 0.91778 0.96180 0.96923 0.79716 0.93279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.46 71.98 0.61 -1.23 16 2 C 0.01 0.20 0.96 -52.93 -0.05 0.15 16 3 C -0.13 -1.76 8.04 71.98 0.58 -1.18 16 4 C -0.14 -1.58 8.20 71.98 0.59 -0.99 16 5 C 0.03 0.68 5.65 43.05 0.24 0.93 16 6 C -0.16 -3.39 10.12 22.66 0.23 -3.16 16 7 C -0.04 -0.95 7.16 40.78 0.29 -0.66 16 8 C 0.59 14.68 7.80 86.59 0.68 15.36 16 9 O -0.56 -17.94 16.57 -4.13 -0.07 -18.01 16 10 N -0.70 -14.26 4.98 -442.63 -2.20 -16.46 16 11 C 0.15 3.54 2.82 45.72 0.13 3.67 16 12 H 0.08 2.17 7.26 -2.39 -0.02 2.16 16 13 C -0.12 -2.37 6.59 31.32 0.21 -2.17 16 14 C -0.11 -1.89 6.83 31.67 0.22 -1.67 16 15 C -0.12 -2.70 6.19 31.89 0.20 -2.50 16 16 C -0.10 -2.44 2.59 -9.72 -0.03 -2.47 16 17 H 0.09 2.15 7.74 -2.39 -0.02 2.13 16 18 C 0.16 6.07 5.54 86.38 0.48 6.55 16 19 N -0.75 -34.09 5.30 -343.45 -1.82 -35.91 16 20 C -0.24 -13.72 10.47 84.03 0.88 -12.84 16 21 H 0.05 3.11 8.06 -2.91 -0.02 3.09 16 22 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 23 N -0.99 -63.56 13.97 21.65 0.30 -63.25 16 24 Si 0.96 44.27 27.74 68.60 1.90 46.18 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 26 H -0.24 -9.79 6.52 99.48 0.65 -9.14 16 27 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 28 N -0.37 -6.50 6.85 -48.00 -0.33 -6.83 16 29 H 0.46 5.15 8.22 -220.00 -1.81 3.34 16 30 N -0.27 -5.59 11.48 -47.50 -0.55 -6.13 16 31 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.79 8.08 -2.39 -0.02 0.77 16 37 H 0.06 0.71 7.60 -2.39 -0.02 0.69 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.17 3.35 7.79 -2.91 -0.02 3.33 16 41 H 0.41 5.84 7.54 -92.70 -0.70 5.15 16 42 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 1.32 7.92 -2.39 -0.02 1.30 16 44 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.06 1.65 7.96 -2.39 -0.02 1.63 16 48 H 0.02 0.80 8.02 -2.39 -0.02 0.78 16 49 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 50 H 0.37 15.44 5.50 -92.71 -0.51 14.93 16 51 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 Total: -1.00 -75.84 408.23 0.82 -75.02 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: -2.14 Total: 31.08 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 5.72 Total: -5.68 kcal Atomic # 7 Polarization: -124.00 SS G_CDS: -4.59 Total: -128.59 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.07 Total: -18.01 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.18 kcal Total: -75.84 0.82 -75.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568530742.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.697 kcal (2) G-P(sol) polarization free energy of solvation -75.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds