Wall clock time and date at job start Tue Mar 31 2020 20:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47085 * 2 1 4 4 C 1.52998 * 109.47065 * 239.99444 * 2 1 3 5 5 C 1.50705 * 109.46800 * 119.99999 * 2 1 3 6 6 C 1.39672 * 126.07106 * 74.99830 * 5 2 1 7 7 C 1.38403 * 105.35841 * 179.97438 * 6 5 2 8 8 C 1.47164 * 126.87938 * 180.02562 * 7 6 5 9 9 O 1.21624 * 120.00249 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99473 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99516 * 179.97438 * 10 8 7 12 12 H 1.08999 * 110.06202 * 33.58815 * 11 10 8 13 13 C 1.54270 * 110.03440 * 272.16638 * 11 10 8 14 14 C 1.54888 * 104.19557 * 264.32853 * 13 11 10 15 15 C 1.54965 * 102.77803 * 322.08184 * 14 13 11 16 16 C 1.53879 * 110.03035 * 155.00412 * 11 10 8 17 17 H 1.09002 * 110.03056 * 359.94656 * 16 11 10 18 18 C 1.53001 * 110.03323 * 238.57097 * 16 11 10 19 19 N 1.46490 * 109.47264 * 175.68624 * 18 16 11 20 20 C 1.36935 * 120.00121 * 179.97438 * 19 18 16 21 21 H 1.07997 * 120.00139 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00401 * 180.02562 * 20 19 18 23 23 N 1.31624 * 119.99569 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00172 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.46685 * 269.99637 * 24 22 20 26 26 H 1.48494 * 109.47357 * 29.99716 * 24 22 20 27 27 H 1.48502 * 109.47120 * 150.00435 * 24 22 20 28 28 N 1.36600 * 106.23084 * 0.26544 * 7 6 5 29 29 H 0.96995 * 125.18283 * 179.73441 * 28 7 6 30 30 N 1.28445 * 109.61878 * 359.54924 * 28 7 6 31 31 H 1.08997 * 109.47280 * 300.00351 * 1 2 3 32 32 H 1.09001 * 109.47165 * 60.00026 * 1 2 3 33 33 H 1.08998 * 109.47253 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.46861 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47098 * 300.00015 * 3 2 1 36 36 H 1.08997 * 109.47348 * 59.99691 * 3 2 1 37 37 H 1.08996 * 109.47221 * 300.00804 * 4 2 1 38 38 H 1.09006 * 109.46995 * 59.99889 * 4 2 1 39 39 H 1.08996 * 109.47330 * 179.97438 * 4 2 1 40 40 H 1.08002 * 127.31830 * 359.94458 * 6 5 2 41 41 H 0.96998 * 120.00115 * 0.02562 * 10 8 7 42 42 H 1.09002 * 110.48241 * 23.00922 * 13 11 10 43 43 H 1.08996 * 110.48483 * 145.64907 * 13 11 10 44 44 H 1.09000 * 110.75653 * 80.37354 * 14 13 11 45 45 H 1.09007 * 110.75283 * 203.74291 * 14 13 11 46 46 H 1.08996 * 110.47838 * 279.23503 * 15 14 13 47 47 H 1.08999 * 110.52644 * 156.56757 * 15 14 13 48 48 H 1.09003 * 109.46836 * 55.68331 * 18 16 11 49 49 H 1.08999 * 109.47071 * 295.69370 * 18 16 11 50 50 H 0.97000 * 120.00577 * 0.02562 * 19 18 16 51 51 H 0.97001 * 119.99885 * 359.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 2.0309 -2.0912 1.4411 7 6 2.5823 -2.2709 2.6977 8 6 2.8046 -3.5505 3.3899 9 8 2.4916 -4.5954 2.8519 10 7 3.3551 -3.5643 4.6201 11 6 3.5759 -4.8380 5.3094 12 1 3.8200 -5.6167 4.5869 13 6 2.3155 -5.2330 6.1064 14 6 2.5960 -4.7186 7.5402 15 6 4.1089 -5.0038 7.7168 16 6 4.7156 -4.6927 6.3330 17 1 5.1050 -3.6748 6.3162 18 6 5.8347 -5.6867 6.0160 19 7 6.9559 -5.4686 6.9332 20 6 8.0788 -6.2466 6.8391 21 1 8.1381 -7.0207 6.0884 22 6 9.1411 -6.0402 7.7086 23 7 9.0687 -5.0970 8.6238 24 14 10.6732 -7.1011 7.5797 25 1 10.5207 -8.2981 8.4453 26 1 10.8612 -7.5300 6.1705 27 1 11.8557 -6.3186 8.0210 28 7 2.8739 -1.0223 3.1689 29 1 3.2695 -0.8294 4.0332 30 7 2.5477 -0.1431 2.2912 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 1.6766 -1.7489 -1.2491 38 1 1.6766 -0.2076 -2.1392 39 1 3.1300 -0.7210 -1.2494 40 1 1.6746 -2.8560 0.7668 41 1 3.6044 -2.7309 5.0493 42 1 1.4334 -4.7451 5.6917 43 1 2.1886 -6.3156 6.1076 44 1 2.3938 -3.6500 7.6136 45 1 2.0098 -5.2749 8.2717 46 1 4.2718 -6.0492 7.9785 47 1 4.5352 -4.3485 8.4763 48 1 6.1710 -5.5400 4.9896 49 1 5.4613 -6.7040 6.1340 50 1 6.9027 -4.7735 7.6077 51 1 8.2733 -4.5460 8.6904 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568530743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:14 Heat of formation + Delta-G solvation = 21.125977 kcal Electronic energy + Delta-G solvation = -28757.571940 eV Core-core repulsion = 24885.586054 eV Total energy + Delta-G solvation = -3871.985886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.88689 -40.06360 -38.09860 -37.23837 -34.86455 -33.76399 -31.48036 -31.31855 -31.03556 -28.47918 -27.95915 -27.55079 -27.42398 -24.52303 -23.56845 -22.94983 -22.25982 -21.15553 -20.36640 -20.19472 -18.91949 -18.64192 -17.33668 -16.53681 -16.07876 -16.03708 -15.38878 -15.36727 -14.76050 -14.74676 -14.31001 -14.18476 -14.01274 -13.85085 -13.73276 -13.66195 -13.32112 -13.15873 -12.60295 -12.44952 -12.25121 -11.94725 -11.70405 -11.66965 -11.48063 -11.35292 -11.31151 -11.01655 -10.87925 -10.81103 -10.77217 -10.60338 -10.56005 -10.38045 -10.19962 -10.03042 -9.48911 -9.41431 -9.26383 -9.11037 -8.90434 -7.03435 -6.13453 -3.13016 1.00406 2.27453 2.48339 2.82090 3.01457 3.50490 3.55165 3.69132 4.05233 4.35089 4.45071 4.51098 4.65035 4.69284 4.69499 4.84777 4.90991 4.98841 5.20903 5.29353 5.32581 5.34982 5.43233 5.43819 5.48898 5.50036 5.59692 5.60975 5.61909 5.64373 5.67791 5.72693 5.75399 5.83251 5.90568 5.96370 5.97507 6.01042 6.04957 6.10896 6.19792 6.29759 6.38761 6.44920 6.63287 6.63407 6.74310 7.19618 7.69413 7.79242 7.89871 8.73085 9.19791 10.06165 10.20921 11.35221 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.015183 B = 0.002237 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.726939 B =12512.766264 C =13428.429596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.017 3.983 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.038 3.962 6 C -0.147 4.147 7 C -0.035 4.035 8 C 0.589 3.411 9 O -0.519 6.519 10 N -0.715 5.715 11 C 0.147 3.853 12 H 0.098 0.902 13 C -0.130 4.130 14 C -0.125 4.125 15 C -0.113 4.113 16 C -0.104 4.104 17 H 0.075 0.925 18 C 0.167 3.833 19 N -0.742 5.742 20 C -0.331 4.331 21 H 0.065 0.935 22 C -0.046 4.046 23 N -0.945 5.945 24 Si 1.083 2.917 25 H -0.295 1.295 26 H -0.295 1.295 27 H -0.288 1.288 28 N -0.379 5.379 29 H 0.444 0.556 30 N -0.264 5.264 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.163 0.837 41 H 0.393 0.607 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.019 0.981 49 H 0.024 0.976 50 H 0.366 0.634 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.980 11.264 -13.930 26.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.015 3.985 3 C -0.193 4.193 4 C -0.198 4.198 5 C -0.120 4.120 6 C -0.177 4.177 7 C -0.163 4.163 8 C 0.374 3.626 9 O -0.393 6.393 10 N -0.366 5.366 11 C 0.043 3.957 12 H 0.116 0.884 13 C -0.169 4.169 14 C -0.163 4.163 15 C -0.151 4.151 16 C -0.124 4.124 17 H 0.093 0.907 18 C 0.039 3.961 19 N -0.387 5.387 20 C -0.462 4.462 21 H 0.083 0.917 22 C -0.243 4.243 23 N -0.591 5.591 24 Si 0.913 3.087 25 H -0.223 1.223 26 H -0.221 1.221 27 H -0.214 1.214 28 N -0.095 5.095 29 H 0.289 0.711 30 N -0.096 5.096 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.180 0.820 41 H 0.227 0.773 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.086 0.914 48 H 0.037 0.963 49 H 0.042 0.958 50 H 0.200 0.800 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.385 11.004 -13.395 25.269 hybrid contribution -1.286 0.197 0.003 1.301 sum -19.671 11.201 -13.392 26.301 Atomic orbital electron populations 1.21872 0.93284 1.02347 1.02064 1.18917 0.95403 0.94858 0.89335 1.21773 1.01379 0.94226 1.01902 1.21892 1.01509 1.00510 0.95890 1.21921 1.02926 0.91616 0.95546 1.21985 1.03849 0.96517 0.95303 1.21800 1.10110 0.86522 0.97894 1.16998 0.77908 0.86764 0.80929 1.90848 1.50787 1.31688 1.66002 1.46097 1.63178 1.10270 1.17068 1.21740 0.94757 0.84985 0.94251 0.88418 1.22753 0.97074 1.01663 0.95406 1.22556 0.96896 1.00465 0.96368 1.22399 0.93759 1.02779 0.96133 1.22254 0.94894 1.01030 0.94186 0.90671 1.20666 0.86832 0.95074 0.93524 1.42322 1.15333 1.42132 1.38952 1.20067 0.95200 1.13925 1.16962 0.91740 1.25783 1.01684 1.01418 0.95446 1.70866 1.30631 1.21983 1.35582 0.83195 0.75582 0.74907 0.74972 1.22270 1.22142 1.21376 1.43622 1.46546 1.02911 1.16455 0.71131 1.73083 1.16549 1.19882 1.00135 0.92507 0.91856 0.92191 0.92434 0.92402 0.92028 0.92031 0.91829 0.92297 0.81971 0.77278 0.91549 0.90419 0.92016 0.91504 0.90618 0.91398 0.96325 0.95808 0.80042 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.92 8.46 37.16 0.31 -0.61 16 2 C 0.02 0.13 0.96 -155.66 -0.15 -0.02 16 3 C -0.14 -1.00 8.04 37.15 0.30 -0.71 16 4 C -0.14 -0.96 8.20 37.16 0.30 -0.65 16 5 C 0.04 0.39 5.65 -82.47 -0.47 -0.08 16 6 C -0.15 -1.62 10.12 -38.99 -0.39 -2.01 16 7 C -0.03 -0.39 7.16 -82.06 -0.59 -0.98 16 8 C 0.59 7.59 7.80 -12.63 -0.10 7.49 16 9 O -0.52 -8.44 16.57 5.26 0.09 -8.35 16 10 N -0.72 -8.02 5.03 -53.87 -0.27 -8.29 16 11 C 0.15 1.92 2.90 -66.81 -0.19 1.73 16 12 H 0.10 1.48 7.09 -51.93 -0.37 1.11 16 13 C -0.13 -1.52 6.54 -25.07 -0.16 -1.68 16 14 C -0.13 -1.39 6.91 -24.70 -0.17 -1.56 16 15 C -0.11 -1.58 6.05 -25.03 -0.15 -1.73 16 16 C -0.10 -1.55 2.73 -89.50 -0.24 -1.79 16 17 H 0.07 1.09 7.62 -51.93 -0.40 0.70 16 18 C 0.17 3.32 5.31 -4.05 -0.02 3.30 16 19 N -0.74 -18.40 5.44 -59.91 -0.33 -18.72 16 20 C -0.33 -9.37 9.99 -15.06 -0.15 -9.52 16 21 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 22 C -0.05 -1.34 5.50 -17.43 -0.10 -1.44 16 23 N -0.94 -29.07 13.70 55.49 0.76 -28.31 16 24 Si 1.08 26.10 29.92 -169.99 -5.09 21.02 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 N -0.38 -3.57 6.85 33.48 0.23 -3.34 16 29 H 0.44 2.87 8.22 -190.46 -1.57 1.31 16 30 N -0.26 -2.80 11.48 33.64 0.39 -2.42 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.06 0.41 7.60 -51.93 -0.39 0.02 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.16 1.64 7.79 -52.49 -0.41 1.23 16 41 H 0.39 3.39 7.50 -40.82 -0.31 3.08 16 42 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.08 1.19 7.77 -51.93 -0.40 0.78 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 49 H 0.02 0.49 8.02 -51.93 -0.42 0.07 16 50 H 0.37 9.17 6.36 -40.82 -0.26 8.91 16 51 H 0.25 7.64 6.77 -40.82 -0.28 7.36 16 LS Contribution 409.04 15.07 6.16 6.16 Total: -1.00 -34.36 409.04 -9.94 -44.30 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -9.91 Total: 8.22 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.97 Total: -10.26 kcal Atomic # 7 Polarization: -61.86 SS G_CDS: 0.78 Total: -61.08 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.09 Total: -8.35 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.09 Total: 21.02 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.36 -9.94 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568530743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.421 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds