Wall clock time and date at job start Tue Mar 31 2020 18:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47206 * 2 1 4 4 N 1.30494 * 125.64662 * 269.95732 * 3 2 1 5 5 C 1.34121 * 109.25755 * 180.02562 * 4 3 2 6 6 C 1.34671 * 108.01837 * 359.73131 * 5 4 3 7 7 N 1.35042 * 125.65113 * 89.99692 * 3 2 1 8 8 C 1.46491 * 126.39805 * 359.96413 * 7 3 2 9 9 H 1.09000 * 109.47425 * 0.02562 * 8 7 3 10 10 C 1.53003 * 109.47182 * 120.00185 * 8 7 3 11 11 C 1.53002 * 109.47256 * 239.99945 * 8 7 3 12 12 C 1.50701 * 109.47115 * 175.00226 * 11 8 7 13 13 O 1.21281 * 120.00352 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99896 * 180.02562 * 12 11 8 15 15 C 1.47425 * 125.64674 * 4.97215 * 14 12 11 16 16 C 1.54910 * 104.82874 * 204.09089 * 15 14 12 17 17 C 1.55400 * 101.66891 * 323.07644 * 16 15 14 18 18 C 1.47020 * 125.64652 * 184.92966 * 14 12 11 19 19 H 1.09000 * 109.88526 * 59.40373 * 18 14 12 20 20 C 1.53005 * 109.88517 * 298.39189 * 18 14 12 21 21 N 1.46495 * 109.47253 * 175.30279 * 20 18 14 22 22 C 1.36939 * 120.00029 * 174.93736 * 21 20 18 23 23 H 1.08000 * 119.99627 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99935 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00294 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99970 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46983 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.46838 * 59.99561 * 26 24 22 29 29 H 1.48494 * 109.46993 * 299.99789 * 26 24 22 30 30 H 1.09005 * 109.47196 * 300.00331 * 1 2 3 31 31 H 1.09003 * 109.46763 * 60.00422 * 1 2 3 32 32 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47402 * 239.99756 * 2 1 3 34 34 H 1.09003 * 109.46763 * 119.99578 * 2 1 3 35 35 H 1.08005 * 125.99314 * 179.97438 * 5 4 3 36 36 H 1.08000 * 126.59012 * 180.27894 * 6 5 4 37 37 H 1.09000 * 109.47022 * 59.99653 * 10 8 7 38 38 H 1.08999 * 109.47281 * 180.02562 * 10 8 7 39 39 H 1.08994 * 109.47201 * 299.99966 * 10 8 7 40 40 H 1.09004 * 109.47155 * 55.00391 * 11 8 7 41 41 H 1.08999 * 109.47433 * 295.00093 * 11 8 7 42 42 H 1.08995 * 110.36704 * 322.92630 * 15 14 12 43 43 H 1.09001 * 110.36715 * 85.14866 * 15 14 12 44 44 H 1.09000 * 111.00301 * 81.06407 * 16 15 14 45 45 H 1.08995 * 111.00686 * 204.91348 * 16 15 14 46 46 H 1.08995 * 110.69683 * 277.04910 * 17 16 15 47 47 H 1.09005 * 110.85183 * 153.69850 * 17 16 15 48 48 H 1.09003 * 109.46962 * 55.30165 * 20 18 14 49 49 H 1.09004 * 109.46828 * 295.30522 * 20 18 14 50 50 H 0.97004 * 119.99855 * 354.93355 * 21 20 18 51 51 H 0.97003 * 120.00139 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2866 2.1376 -1.0604 5 6 2.7158 3.3506 -0.6820 6 6 2.7223 3.3889 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1434 1.7376 2.4909 9 1 1.7801 0.7103 2.5199 10 6 3.4973 1.8193 3.1990 11 6 1.1421 2.6533 3.1979 12 6 0.8935 2.1430 4.5939 13 8 1.4609 1.1449 4.9848 14 7 0.0398 2.7953 5.4078 15 6 -0.7917 3.9527 5.0308 16 6 -1.0782 4.6864 6.3647 17 6 -1.2399 3.4956 7.3499 18 6 -0.2170 2.4697 6.8183 19 1 0.7089 2.5393 7.3894 20 6 -0.7918 1.0561 6.9298 21 7 -0.9392 0.6989 8.3429 22 6 -1.5337 -0.4844 8.6916 23 1 -1.8943 -1.1540 7.9248 24 6 -1.6739 -0.8225 10.0305 25 7 -1.2349 -0.0061 10.9650 26 14 -2.4856 -2.4364 10.5063 27 1 -2.5121 -2.5598 11.9859 28 1 -1.7148 -3.5670 9.9293 29 1 -3.8744 -2.4654 9.9817 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.0020 4.1568 -1.3412 36 1 3.0119 4.2254 1.2830 37 1 3.8611 2.8464 3.1700 38 1 3.3849 1.5023 4.2358 39 1 4.2106 1.1669 2.6954 40 1 0.2043 2.6637 2.6425 41 1 1.5464 3.6643 3.2473 42 1 -0.2468 4.6051 4.3485 43 1 -1.7224 3.6181 4.5726 44 1 -0.2369 5.3171 6.6521 45 1 -1.9972 5.2690 6.3007 46 1 -2.2512 3.0916 7.3031 47 1 -0.9906 3.7971 8.3673 48 1 -0.1172 0.3503 6.4451 49 1 -1.7662 1.0206 6.4425 50 1 -0.6156 1.3006 9.0315 51 1 -0.8131 0.8317 10.7180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569541749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:58 Heat of formation + Delta-G solvation = 32.486093 kcal Electronic energy + Delta-G solvation = -29605.996222 eV Core-core repulsion = 25734.502947 eV Total energy + Delta-G solvation = -3871.493275 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.42158 -40.36144 -37.94792 -35.75270 -34.84135 -34.04041 -32.12640 -31.43104 -30.90033 -28.90774 -28.77631 -27.97278 -24.98950 -24.22201 -23.63965 -22.88328 -22.27264 -21.37864 -20.67493 -19.53414 -18.92618 -17.85384 -17.23446 -16.54807 -16.51126 -15.85097 -15.58690 -15.07693 -14.90908 -14.40841 -14.37052 -14.02552 -13.85622 -13.69939 -13.68068 -13.57886 -13.36259 -13.21841 -13.03357 -12.83437 -12.53957 -12.25066 -12.15929 -11.88789 -11.83327 -11.65194 -11.54413 -11.35037 -11.26531 -10.85926 -10.70810 -10.62132 -10.54684 -10.20345 -9.99646 -9.88057 -9.73756 -9.22259 -8.85765 -8.63283 -8.55758 -6.99519 -6.10188 -3.09453 1.82861 2.37035 2.49177 2.94741 2.97140 3.52017 3.56021 3.73138 4.10457 4.15073 4.24683 4.38352 4.43793 4.54749 4.69033 4.71379 4.76856 4.85515 4.90908 4.99765 5.03654 5.10828 5.14635 5.21872 5.25771 5.32078 5.35568 5.40490 5.52267 5.55021 5.58356 5.62010 5.67101 5.73833 5.75048 5.80805 5.90464 5.90773 5.94578 6.00159 6.16421 6.23795 6.35743 6.57487 6.66974 6.88061 6.98224 7.45206 7.81226 7.93004 8.06273 8.75747 9.22634 10.08790 10.23501 11.38487 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.002674 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.247025 B =10467.481831 C =11518.785609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.042 4.042 3 C 0.211 3.789 4 N -0.493 5.493 5 C -0.031 4.031 6 C -0.058 4.058 7 N -0.447 5.447 8 C 0.146 3.854 9 H 0.113 0.887 10 C -0.166 4.166 11 C -0.145 4.145 12 C 0.530 3.470 13 O -0.523 6.523 14 N -0.609 5.609 15 C 0.098 3.902 16 C -0.134 4.134 17 C -0.121 4.121 18 C 0.129 3.871 19 H 0.075 0.925 20 C 0.152 3.848 21 N -0.740 5.740 22 C -0.327 4.327 23 H 0.063 0.937 24 C -0.046 4.046 25 N -0.945 5.945 26 Si 1.080 2.920 27 H -0.285 1.285 28 H -0.295 1.295 29 H -0.295 1.295 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.083 0.917 47 H 0.083 0.917 48 H 0.036 0.964 49 H 0.020 0.980 50 H 0.366 0.634 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.116 11.563 -20.567 24.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.051 4.051 4 N -0.212 5.212 5 C -0.179 4.179 6 C -0.190 4.190 7 N -0.130 5.130 8 C 0.042 3.958 9 H 0.131 0.869 10 C -0.223 4.223 11 C -0.185 4.185 12 C 0.318 3.682 13 O -0.400 6.400 14 N -0.344 5.344 15 C -0.025 4.025 16 C -0.172 4.172 17 C -0.159 4.159 18 C 0.027 3.973 19 H 0.093 0.907 20 C 0.024 3.976 21 N -0.386 5.386 22 C -0.458 4.458 23 H 0.081 0.919 24 C -0.243 4.243 25 N -0.591 5.591 26 Si 0.911 3.089 27 H -0.210 1.210 28 H -0.223 1.223 29 H -0.223 1.223 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.185 0.815 36 H 0.187 0.813 37 H 0.077 0.923 38 H 0.118 0.882 39 H 0.081 0.919 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.102 0.898 46 H 0.102 0.898 47 H 0.101 0.899 48 H 0.054 0.946 49 H 0.038 0.962 50 H 0.199 0.801 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.845 9.560 -19.967 22.661 hybrid contribution 0.639 1.747 -0.340 1.891 sum 5.484 11.307 -20.307 23.881 Atomic orbital electron populations 1.21741 0.93796 1.02548 1.02398 1.20007 0.96581 0.87431 1.04116 1.23296 1.03789 0.96680 0.81312 1.70237 1.18382 1.04308 1.28259 1.22248 1.06655 0.96261 0.92729 1.22590 1.09748 0.89995 0.96710 1.45624 1.48625 1.11661 1.07101 1.21188 0.97263 0.99909 0.77396 0.86932 1.22284 0.94345 1.02458 1.03230 1.21955 1.01293 1.01107 0.94174 1.19806 0.78871 0.83480 0.86082 1.90755 1.49145 1.24290 1.75788 1.48496 1.41541 1.32042 1.12289 1.22360 0.95001 0.87211 0.97898 1.22833 1.02452 0.97618 0.94297 1.22719 1.00123 0.93911 0.99159 1.21859 0.98655 0.96671 0.80164 0.90734 1.20907 0.97095 0.91747 0.87893 1.42207 1.73268 1.22700 1.00406 1.20000 1.34737 0.96917 0.94115 0.91889 1.25767 1.01809 1.05460 0.91252 1.70891 1.42657 1.11782 1.33746 0.83241 0.75372 0.74259 0.76047 1.20997 1.22253 1.22289 0.92865 0.91892 0.91398 0.88700 0.90241 0.81545 0.81299 0.92317 0.88195 0.91852 0.88362 0.88274 0.90861 0.91135 0.90734 0.89811 0.89844 0.89870 0.94628 0.96211 0.80126 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.89 37.16 0.37 -0.86 16 2 C -0.04 -0.38 6.08 -27.88 -0.17 -0.55 16 3 C 0.21 2.36 7.16 -155.42 -1.11 1.25 16 4 N -0.49 -6.23 11.25 -10.82 -0.12 -6.36 16 5 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 6 C -0.06 -0.53 10.70 -16.56 -0.18 -0.71 16 7 N -0.45 -4.46 2.61 -106.83 -0.28 -4.74 16 8 C 0.15 1.42 2.64 -67.93 -0.18 1.24 16 9 H 0.11 1.20 6.48 -51.93 -0.34 0.87 16 10 C -0.17 -1.64 9.00 37.16 0.33 -1.30 16 11 C -0.14 -1.33 4.11 -27.88 -0.11 -1.44 16 12 C 0.53 7.03 7.38 -10.98 -0.08 6.94 16 13 O -0.52 -8.96 12.76 5.56 0.07 -8.89 16 14 N -0.61 -7.94 3.07 -163.01 -0.50 -8.44 16 15 C 0.10 0.91 6.74 -2.53 -0.02 0.89 16 16 C -0.13 -1.25 7.09 -24.45 -0.17 -1.42 16 17 C -0.12 -1.64 6.23 -24.76 -0.15 -1.80 16 18 C 0.13 2.10 2.95 -66.95 -0.20 1.90 16 19 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 20 C 0.15 3.23 5.65 -4.04 -0.02 3.20 16 21 N -0.74 -18.97 5.40 -59.91 -0.32 -19.29 16 22 C -0.33 -9.45 9.99 -15.06 -0.15 -9.60 16 23 H 0.06 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.05 -1.35 5.50 -17.43 -0.10 -1.44 16 25 N -0.94 -29.36 13.70 55.49 0.76 -28.60 16 26 Si 1.08 26.29 29.92 -169.99 -5.09 21.20 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.58 16 28 H -0.30 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.30 -6.84 7.11 56.52 0.40 -6.43 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.66 7.08 -51.93 -0.37 0.29 16 35 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 37 H 0.06 0.50 7.96 -51.93 -0.41 0.09 16 38 H 0.10 1.21 5.95 -51.93 -0.31 0.90 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.73 7.90 -51.93 -0.41 0.32 16 42 H 0.07 0.50 7.48 -51.93 -0.39 0.11 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 1.26 7.77 -51.93 -0.40 0.85 16 47 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.04 0.85 6.56 -51.93 -0.34 0.51 16 49 H 0.02 0.43 8.03 -51.93 -0.42 0.02 16 50 H 0.37 9.41 6.43 -40.82 -0.26 9.15 16 51 H 0.25 7.71 6.77 -40.82 -0.28 7.44 16 LS Contribution 404.91 15.07 6.10 6.10 Total: -1.00 -35.63 404.91 -10.16 -45.78 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -8.63 Total: 7.45 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.15 Total: -4.22 kcal Atomic # 7 Polarization: -66.97 SS G_CDS: -0.46 Total: -67.43 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: 0.07 Total: -8.89 kcal Atomic # 14 Polarization: 26.29 SS G_CDS: -5.09 Total: 21.20 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.63 -10.16 -45.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569541749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.270 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds