Wall clock time and date at job start Tue Mar 31 2020 18:43:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50705 * 109.47206 * 2 1 4 4 N 1.30494 * 125.64662 * 269.95732 * 3 2 1 5 5 C 1.34121 * 109.25755 * 180.02562 * 4 3 2 6 6 C 1.34671 * 108.01837 * 359.73131 * 5 4 3 7 7 N 1.35042 * 125.65113 * 89.99692 * 3 2 1 8 8 C 1.46491 * 126.39805 * 359.96413 * 7 3 2 9 9 H 1.09000 * 109.47425 * 0.02562 * 8 7 3 10 10 C 1.53003 * 109.47182 * 120.00185 * 8 7 3 11 11 C 1.53002 * 109.47256 * 239.99945 * 8 7 3 12 12 C 1.50701 * 109.47115 * 175.00226 * 11 8 7 13 13 O 1.21281 * 120.00352 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99896 * 180.02562 * 12 11 8 15 15 C 1.47425 * 125.64674 * 4.97215 * 14 12 11 16 16 C 1.54910 * 104.82874 * 204.09089 * 15 14 12 17 17 C 1.55400 * 101.66891 * 323.07644 * 16 15 14 18 18 C 1.47020 * 125.64652 * 184.92966 * 14 12 11 19 19 H 1.09000 * 109.88526 * 59.40373 * 18 14 12 20 20 C 1.53005 * 109.88517 * 298.39189 * 18 14 12 21 21 N 1.46495 * 109.47253 * 175.30279 * 20 18 14 22 22 C 1.36939 * 120.00029 * 174.93736 * 21 20 18 23 23 H 1.08000 * 119.99627 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99935 * 180.02562 * 22 21 20 25 25 N 1.31618 * 120.00294 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99970 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46983 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.46838 * 59.99561 * 26 24 22 29 29 H 1.48494 * 109.46993 * 299.99789 * 26 24 22 30 30 H 1.09005 * 109.47196 * 300.00331 * 1 2 3 31 31 H 1.09003 * 109.46763 * 60.00422 * 1 2 3 32 32 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47402 * 239.99756 * 2 1 3 34 34 H 1.09003 * 109.46763 * 119.99578 * 2 1 3 35 35 H 1.08005 * 125.99314 * 179.97438 * 5 4 3 36 36 H 1.08000 * 126.59012 * 180.27894 * 6 5 4 37 37 H 1.09000 * 109.47022 * 59.99653 * 10 8 7 38 38 H 1.08999 * 109.47281 * 180.02562 * 10 8 7 39 39 H 1.08994 * 109.47201 * 299.99966 * 10 8 7 40 40 H 1.09004 * 109.47155 * 55.00391 * 11 8 7 41 41 H 1.08999 * 109.47433 * 295.00093 * 11 8 7 42 42 H 1.08995 * 110.36704 * 322.92630 * 15 14 12 43 43 H 1.09001 * 110.36715 * 85.14866 * 15 14 12 44 44 H 1.09000 * 111.00301 * 81.06407 * 16 15 14 45 45 H 1.08995 * 111.00686 * 204.91348 * 16 15 14 46 46 H 1.08995 * 110.69683 * 277.04910 * 17 16 15 47 47 H 1.09005 * 110.85183 * 153.69850 * 17 16 15 48 48 H 1.09003 * 109.46962 * 55.30165 * 20 18 14 49 49 H 1.09004 * 109.46828 * 295.30522 * 20 18 14 50 50 H 0.97004 * 119.99855 * 354.93355 * 21 20 18 51 51 H 0.97003 * 120.00139 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2866 2.1376 -1.0604 5 6 2.7158 3.3506 -0.6820 6 6 2.7223 3.3889 0.6642 7 7 2.2947 2.1629 1.0973 8 6 2.1434 1.7376 2.4909 9 1 1.7801 0.7103 2.5199 10 6 3.4973 1.8193 3.1990 11 6 1.1421 2.6533 3.1979 12 6 0.8935 2.1430 4.5939 13 8 1.4609 1.1449 4.9848 14 7 0.0398 2.7953 5.4078 15 6 -0.7917 3.9527 5.0308 16 6 -1.0782 4.6864 6.3647 17 6 -1.2399 3.4956 7.3499 18 6 -0.2170 2.4697 6.8183 19 1 0.7089 2.5393 7.3894 20 6 -0.7918 1.0561 6.9298 21 7 -0.9392 0.6989 8.3429 22 6 -1.5337 -0.4844 8.6916 23 1 -1.8943 -1.1540 7.9248 24 6 -1.6739 -0.8225 10.0305 25 7 -1.2349 -0.0061 10.9650 26 14 -2.4856 -2.4364 10.5063 27 1 -2.5121 -2.5598 11.9859 28 1 -1.7148 -3.5670 9.9293 29 1 -3.8744 -2.4654 9.9817 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 3.0020 4.1568 -1.3412 36 1 3.0119 4.2254 1.2830 37 1 3.8611 2.8464 3.1700 38 1 3.3849 1.5023 4.2358 39 1 4.2106 1.1669 2.6954 40 1 0.2043 2.6637 2.6425 41 1 1.5464 3.6643 3.2473 42 1 -0.2468 4.6051 4.3485 43 1 -1.7224 3.6181 4.5726 44 1 -0.2369 5.3171 6.6521 45 1 -1.9972 5.2690 6.3007 46 1 -2.2512 3.0916 7.3031 47 1 -0.9906 3.7971 8.3673 48 1 -0.1172 0.3503 6.4451 49 1 -1.7662 1.0206 6.4425 50 1 -0.6156 1.3006 9.0315 51 1 -0.8131 0.8317 10.7180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569541749.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:55 Heat of formation + Delta-G solvation = 10.638697 kcal Electronic energy + Delta-G solvation = -29606.943596 eV Core-core repulsion = 25734.502947 eV Total energy + Delta-G solvation = -3872.440649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.18620 -41.42832 -39.04570 -36.78014 -36.62909 -34.73936 -33.66271 -32.76944 -31.76328 -30.28880 -29.55725 -28.89410 -26.56382 -25.23056 -24.79322 -24.18361 -23.43260 -22.23137 -21.68962 -20.41050 -20.02614 -19.34258 -18.61057 -17.67338 -17.51212 -16.82990 -16.49226 -16.36941 -15.80267 -15.73947 -15.55692 -15.30194 -15.10166 -15.05929 -14.75217 -14.54396 -14.38477 -14.12830 -13.97694 -13.83558 -13.52097 -13.28976 -13.22416 -12.87894 -12.74521 -12.61030 -12.60283 -12.56858 -12.29513 -12.14499 -12.01026 -11.98549 -11.90574 -11.71984 -11.35824 -11.14139 -10.97180 -10.80501 -10.61428 -9.76861 -9.29049 -9.17766 -8.46101 -5.40123 1.08356 1.47337 1.51419 1.55430 1.65250 1.82245 2.02506 2.18863 2.67680 3.28717 3.33226 3.36280 3.47816 3.54816 3.62223 3.73794 3.81285 3.87817 3.92276 4.00994 4.18547 4.20053 4.24443 4.31346 4.34679 4.38522 4.42973 4.46480 4.60762 4.64640 4.65349 4.74242 4.77217 4.81842 4.84399 4.94323 4.95023 5.03200 5.03913 5.06672 5.13139 5.23777 5.26445 5.33595 5.41736 5.50825 5.87194 6.21708 6.43762 6.45357 7.00273 7.05576 7.16727 7.91659 8.03080 9.05937 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014548 B = 0.002674 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.247025 B =10467.481831 C =11518.785609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.043 4.043 3 C 0.195 3.805 4 N -0.526 5.526 5 C -0.052 4.052 6 C -0.048 4.048 7 N -0.445 5.445 8 C 0.150 3.850 9 H 0.097 0.903 10 C -0.159 4.159 11 C -0.128 4.128 12 C 0.525 3.475 13 O -0.571 6.571 14 N -0.609 5.609 15 C 0.094 3.906 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.138 3.862 19 H 0.054 0.946 20 C 0.158 3.842 21 N -0.748 5.748 22 C -0.338 4.338 23 H 0.058 0.942 24 C -0.099 4.099 25 N -0.970 5.970 26 Si 1.128 2.872 27 H -0.288 1.288 28 H -0.282 1.282 29 H -0.275 1.275 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.185 0.815 36 H 0.202 0.798 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.113 0.887 41 H 0.131 0.869 42 H 0.113 0.887 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.007 0.993 49 H 0.015 0.985 50 H 0.363 0.637 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.627 13.557 -21.936 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.067 4.067 4 N -0.245 5.245 5 C -0.199 4.199 6 C -0.180 4.180 7 N -0.128 5.128 8 C 0.047 3.953 9 H 0.115 0.885 10 C -0.217 4.217 11 C -0.168 4.168 12 C 0.314 3.686 13 O -0.451 6.451 14 N -0.343 5.343 15 C -0.028 4.028 16 C -0.156 4.156 17 C -0.159 4.159 18 C 0.034 3.966 19 H 0.073 0.927 20 C 0.031 3.969 21 N -0.394 5.394 22 C -0.469 4.469 23 H 0.077 0.923 24 C -0.290 4.290 25 N -0.617 5.617 26 Si 0.952 3.048 27 H -0.213 1.213 28 H -0.208 1.208 29 H -0.200 1.200 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.202 0.798 36 H 0.219 0.781 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.149 0.851 42 H 0.131 0.869 43 H 0.097 0.903 44 H 0.107 0.893 45 H 0.128 0.872 46 H 0.084 0.916 47 H 0.094 0.906 48 H 0.025 0.975 49 H 0.033 0.967 50 H 0.195 0.805 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 4.346 11.604 -21.397 24.726 hybrid contribution 0.837 1.123 0.035 1.401 sum 5.183 12.727 -21.363 25.401 Atomic orbital electron populations 1.21689 0.93352 1.03088 1.01756 1.20063 0.96933 0.86842 1.04376 1.23570 1.04247 0.97340 0.81508 1.70212 1.19437 1.05577 1.29285 1.22682 1.07153 0.96193 0.93900 1.23092 1.08143 0.90120 0.96687 1.45618 1.48536 1.11967 1.06687 1.21056 0.97306 0.99507 0.77427 0.88457 1.22182 0.94464 1.03454 1.01568 1.21883 1.01927 1.02063 0.90945 1.20576 0.77922 0.82745 0.87362 1.90747 1.50850 1.26500 1.76958 1.48603 1.41872 1.33080 1.10755 1.22689 0.95310 0.86175 0.98579 1.22847 1.04379 0.95972 0.92427 1.22631 0.97949 0.95178 1.00105 1.21528 0.98114 0.94323 0.82662 0.92749 1.20896 0.96275 0.94582 0.85158 1.42340 1.72896 1.21950 1.02188 1.20313 1.34421 0.97902 0.94308 0.92350 1.27250 1.02181 1.08144 0.91460 1.70994 1.44210 1.12157 1.34389 0.82639 0.75671 0.70898 0.75597 1.21329 1.20796 1.20040 0.93445 0.92423 0.90313 0.88421 0.89976 0.79802 0.78072 0.90375 0.90640 0.92242 0.86899 0.85073 0.86889 0.90343 0.89309 0.87227 0.91597 0.90559 0.97515 0.96669 0.80508 0.94494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.89 71.98 0.71 -1.57 16 2 C -0.04 -0.76 6.08 29.85 0.18 -0.58 16 3 C 0.20 4.18 7.16 138.13 0.99 5.17 16 4 N -0.53 -12.76 11.25 -188.13 -2.12 -14.88 16 5 C -0.05 -0.99 11.87 83.53 0.99 0.00 16 6 C -0.05 -0.73 10.70 83.09 0.89 0.16 16 7 N -0.45 -7.99 2.61 -491.92 -1.28 -9.28 16 8 C 0.15 2.71 2.64 44.99 0.12 2.83 16 9 H 0.10 2.08 6.48 -2.39 -0.02 2.06 16 10 C -0.16 -2.97 9.00 71.98 0.65 -2.32 16 11 C -0.13 -1.98 4.11 29.85 0.12 -1.86 16 12 C 0.52 13.38 7.38 87.66 0.65 14.03 16 13 O -0.57 -20.15 12.76 -3.03 -0.04 -20.19 16 14 N -0.61 -15.00 3.07 -788.04 -2.42 -17.42 16 15 C 0.09 1.38 6.74 86.86 0.59 1.96 16 16 C -0.12 -1.80 7.09 32.07 0.23 -1.57 16 17 C -0.12 -3.19 6.23 31.87 0.20 -3.00 16 18 C 0.14 4.54 2.95 45.34 0.13 4.67 16 19 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 20 C 0.16 7.00 5.65 86.38 0.49 7.49 16 21 N -0.75 -39.84 5.40 -343.45 -1.86 -41.70 16 22 C -0.34 -20.02 9.99 84.03 0.84 -19.18 16 23 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 24 C -0.10 -5.89 5.50 84.86 0.47 -5.43 16 25 N -0.97 -61.38 13.70 21.65 0.30 -61.09 16 26 Si 1.13 53.06 29.92 68.60 2.05 55.11 16 27 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 28 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 29 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.08 1.37 7.08 -2.39 -0.02 1.36 16 35 H 0.18 2.55 8.06 -2.91 -0.02 2.53 16 36 H 0.20 1.60 8.06 -2.91 -0.02 1.58 16 37 H 0.08 1.12 7.96 -2.39 -0.02 1.11 16 38 H 0.07 1.85 5.95 -2.39 -0.01 1.83 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 41 H 0.13 1.24 7.90 -2.39 -0.02 1.23 16 42 H 0.11 0.85 7.48 -2.39 -0.02 0.84 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.07 1.98 7.77 -2.39 -0.02 1.96 16 47 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 48 H 0.01 0.35 6.56 -2.39 -0.02 0.33 16 49 H 0.02 0.69 8.03 -2.39 -0.02 0.67 16 50 H 0.36 19.50 6.43 -92.71 -0.60 18.91 16 51 H 0.24 15.36 6.77 -92.71 -0.63 14.73 16 Total: -1.00 -80.89 404.91 3.34 -77.55 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: 0.46 Total: 31.08 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 8.24 Total: 0.81 kcal Atomic # 7 Polarization: -136.99 SS G_CDS: -7.37 Total: -144.36 kcal Atomic # 8 Polarization: -20.15 SS G_CDS: -0.04 Total: -20.19 kcal Atomic # 14 Polarization: 53.06 SS G_CDS: 2.05 Total: 55.11 kcal Total: -80.89 3.34 -77.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569541749.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.193 kcal (2) G-P(sol) polarization free energy of solvation -80.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.554 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds