Wall clock time and date at job start Tue Mar 31 2020 18:44:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.50698 * 109.47082 * 2 1
4 4 N 1.30501 * 125.65158 * 270.16877 * 3 2 1
5 5 C 1.34123 * 109.25541 * 180.29341 * 4 3 2
6 6 C 1.34674 * 108.02338 * 359.73117 * 5 4 3
7 7 N 1.35039 * 125.64944 * 90.00229 * 3 2 1
8 8 C 1.46505 * 126.39823 * 359.97149 * 7 3 2
9 9 H 1.08996 * 109.46935 * 359.72067 * 8 7 3
10 10 C 1.52994 * 109.47071 * 239.71511 * 8 7 3
11 11 C 1.53003 * 109.46820 * 119.71921 * 8 7 3
12 12 C 1.50707 * 109.46770 * 185.00335 * 11 8 7
13 13 O 1.21278 * 119.99735 * 359.97438 * 12 11 8
14 14 N 1.34775 * 119.99864 * 180.27506 * 12 11 8
15 15 C 1.47428 * 125.64823 * 354.34982 * 14 12 11
16 16 C 1.54692 * 104.93943 * 204.07222 * 15 14 12
17 17 C 1.55150 * 101.67859 * 323.27922 * 16 15 14
18 18 C 1.47023 * 125.64689 * 174.65838 * 14 12 11
19 19 H 1.08999 * 109.88307 * 59.48885 * 18 14 12
20 20 C 1.52996 * 109.88576 * 298.47420 * 18 14 12
21 21 N 1.46497 * 109.47256 * 175.35469 * 20 18 14
22 22 C 1.36938 * 120.00226 * 184.93360 * 21 20 18
23 23 H 1.08008 * 119.99655 * 0.02562 * 22 21 20
24 24 C 1.38809 * 120.00004 * 180.02562 * 22 21 20
25 25 N 1.31614 * 120.00211 * 0.02562 * 24 22 21
26 26 Si 1.86809 * 119.99736 * 180.02562 * 24 22 21
27 27 H 1.48496 * 109.46976 * 59.99893 * 26 24 22
28 28 H 1.48499 * 109.46949 * 179.97438 * 26 24 22
29 29 H 1.48498 * 109.46882 * 299.99746 * 26 24 22
30 30 H 1.09003 * 109.46966 * 59.99869 * 1 2 3
31 31 H 1.08996 * 109.47321 * 179.97438 * 1 2 3
32 32 H 1.08999 * 109.47120 * 299.99911 * 1 2 3
33 33 H 1.08999 * 109.47120 * 240.00089 * 2 1 3
34 34 H 1.09003 * 109.46966 * 120.00131 * 2 1 3
35 35 H 1.08001 * 125.99251 * 179.72915 * 5 4 3
36 36 H 1.07996 * 126.59067 * 180.02562 * 6 5 4
37 37 H 1.08999 * 109.47161 * 60.00164 * 10 8 7
38 38 H 1.09003 * 109.47350 * 179.97438 * 10 8 7
39 39 H 1.08996 * 109.47696 * 300.00091 * 10 8 7
40 40 H 1.08996 * 109.47534 * 64.99923 * 11 8 7
41 41 H 1.09002 * 109.46838 * 304.99316 * 11 8 7
42 42 H 1.08998 * 110.36796 * 323.00250 * 15 14 12
43 43 H 1.08996 * 110.36308 * 85.32915 * 15 14 12
44 44 H 1.09002 * 111.10174 * 205.10742 * 16 15 14
45 45 H 1.09003 * 110.81275 * 81.32443 * 16 15 14
46 46 H 1.08992 * 110.72333 * 276.96861 * 17 16 15
47 47 H 1.09002 * 110.87039 * 153.76882 * 17 16 15
48 48 H 1.08996 * 109.47384 * 295.36354 * 20 18 14
49 49 H 1.09001 * 109.46783 * 55.36051 * 20 18 14
50 50 H 0.96998 * 120.00261 * 4.94314 * 21 20 18
51 51 H 0.97002 * 120.00037 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2829 2.1390 -1.0604
5 6 2.7190 3.3495 -0.6818
6 6 2.7337 3.3849 0.6643
7 7 2.2947 2.1628 1.0973
8 6 2.1437 1.7373 2.4910
9 1 1.7754 0.7118 2.5199
10 6 1.1478 2.6571 3.2001
11 6 3.4991 1.8124 3.1969
12 6 3.3698 1.2594 4.5928
13 8 2.2989 0.8463 4.9846
14 7 4.4427 1.2294 5.4079
15 6 5.8203 1.5927 5.0285
16 6 6.7229 0.8349 6.0305
17 6 5.8864 0.9215 7.3343
18 6 4.4344 0.8230 6.8208
19 1 4.0788 -0.2036 6.9091
20 6 3.5298 1.7579 7.6259
21 7 3.4400 1.2801 9.0079
22 6 2.6017 1.9020 9.8943
23 1 2.0064 2.7445 9.5744
24 6 2.5171 1.4495 11.2038
25 7 3.2429 0.4232 11.5937
26 14 1.3729 2.2975 12.4129
27 1 -0.0233 2.2153 11.9139
28 1 1.4658 1.6279 13.7351
29 1 1.7665 3.7227 12.5504
30 1 -0.3633 0.5139 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 -0.3633 0.5138 0.8900
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5139 0.8900
35 1 3.0077 4.1549 -1.3410
36 1 3.0338 4.2175 1.2832
37 1 0.1822 2.6037 2.6972
38 1 1.0351 2.3403 4.2369
39 1 1.5161 3.6826 3.1712
40 1 3.8260 2.8510 3.2463
41 1 4.2313 1.2271 2.6407
42 1 6.0306 1.2701 4.0088
43 1 5.9693 2.6680 5.1255
44 1 7.6840 1.3352 6.1490
45 1 6.8591 -0.2016 5.7218
46 1 6.0537 1.8738 7.8374
47 1 6.1173 0.0897 7.9998
48 1 3.9469 2.7648 7.6159
49 1 2.5347 1.7725 7.1812
50 1 3.9745 0.5233 9.2951
51 1 3.1840 0.1073 12.5090
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001569541755.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:44:03
Heat of formation + Delta-G solvation = 10.958054 kcal
Electronic energy + Delta-G solvation = -29473.369927 eV
Core-core repulsion = 25600.943126 eV
Total energy + Delta-G solvation = -3872.426801 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 334.211 amu
Computer time = 1.11 seconds
Orbital eigenvalues (eV)
-43.16264 -41.35966 -38.97677 -36.59157 -36.43850 -34.71162 -33.59253 -32.75638
-31.73595 -30.42145 -29.53810 -28.88594 -26.75217 -25.12196 -24.74915 -24.11514
-23.33222 -22.17372 -21.58298 -20.32512 -20.01858 -19.12533 -18.50421 -17.77572
-17.34222 -16.63408 -16.54696 -16.15535 -16.03952 -15.68810 -15.31222 -15.18556
-15.08614 -14.92288 -14.61962 -14.45416 -14.31074 -14.08869 -13.96070 -13.78335
-13.58041 -13.27270 -13.13801 -12.91638 -12.85761 -12.72382 -12.57117 -12.54046
-12.26207 -12.23914 -12.06776 -11.98260 -11.90994 -11.77870 -11.59411 -11.09543
-10.97408 -10.79646 -10.58929 -9.69224 -9.27586 -9.06462 -7.99530 -5.29196
1.10599 1.43551 1.47492 1.48772 1.53837 1.60592 2.07453 2.20505
2.53700 3.32637 3.34942 3.40358 3.50870 3.63365 3.64850 3.79559
3.90504 3.95171 4.03376 4.12348 4.21956 4.28113 4.34533 4.35008
4.38767 4.41940 4.49047 4.50782 4.64945 4.67144 4.72286 4.76172
4.82791 4.84253 4.92549 4.97115 5.02190 5.07011 5.12113 5.14130
5.16670 5.26509 5.33510 5.39584 5.43679 5.45243 5.88257 6.22076
6.24585 6.52052 7.09399 7.18304 7.28880 8.00850 8.27240 9.23501
Molecular weight = 334.21amu
Principal moments of inertia in cm(-1)
A = 0.014966 B = 0.002579 C = 0.002373
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1870.449479 B =10853.787318 C =11795.486064
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.042 4.042
3 C 0.197 3.803
4 N -0.526 5.526
5 C -0.051 4.051
6 C -0.050 4.050
7 N -0.445 5.445
8 C 0.152 3.848
9 H 0.103 0.897
10 C -0.160 4.160
11 C -0.130 4.130
12 C 0.525 3.475
13 O -0.572 6.572
14 N -0.610 5.610
15 C 0.094 3.906
16 C -0.120 4.120
17 C -0.120 4.120
18 C 0.138 3.862
19 H 0.050 0.950
20 C 0.156 3.844
21 N -0.737 5.737
22 C -0.250 4.250
23 H 0.068 0.932
24 C -0.070 4.070
25 N -0.966 5.966
26 Si 0.974 3.026
27 H -0.282 1.282
28 H -0.290 1.290
29 H -0.275 1.275
30 H 0.053 0.947
31 H 0.082 0.918
32 H 0.045 0.955
33 H 0.100 0.900
34 H 0.087 0.913
35 H 0.184 0.816
36 H 0.198 0.802
37 H 0.059 0.941
38 H 0.073 0.927
39 H 0.072 0.928
40 H 0.124 0.876
41 H 0.120 0.880
42 H 0.107 0.893
43 H 0.085 0.915
44 H 0.111 0.889
45 H 0.082 0.918
46 H 0.071 0.929
47 H 0.075 0.925
48 H 0.017 0.983
49 H 0.008 0.992
50 H 0.376 0.624
51 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.470 3.298 -24.451 25.507
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.080 4.080
3 C -0.065 4.065
4 N -0.245 5.245
5 C -0.198 4.198
6 C -0.182 4.182
7 N -0.128 5.128
8 C 0.049 3.951
9 H 0.121 0.879
10 C -0.218 4.218
11 C -0.170 4.170
12 C 0.314 3.686
13 O -0.452 6.452
14 N -0.343 5.343
15 C -0.027 4.027
16 C -0.158 4.158
17 C -0.158 4.158
18 C 0.033 3.967
19 H 0.068 0.932
20 C 0.028 3.972
21 N -0.381 5.381
22 C -0.382 4.382
23 H 0.086 0.914
24 C -0.262 4.262
25 N -0.616 5.616
26 Si 0.802 3.198
27 H -0.208 1.208
28 H -0.216 1.216
29 H -0.201 1.201
30 H 0.072 0.928
31 H 0.101 0.899
32 H 0.064 0.936
33 H 0.118 0.882
34 H 0.105 0.895
35 H 0.201 0.799
36 H 0.215 0.785
37 H 0.078 0.922
38 H 0.092 0.908
39 H 0.091 0.909
40 H 0.142 0.858
41 H 0.138 0.862
42 H 0.125 0.875
43 H 0.104 0.896
44 H 0.129 0.871
45 H 0.101 0.899
46 H 0.090 0.910
47 H 0.093 0.907
48 H 0.035 0.965
49 H 0.026 0.974
50 H 0.209 0.791
51 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 5.614 2.926 -24.930 25.722
hybrid contribution -0.637 0.400 2.044 2.178
sum 4.977 3.326 -22.886 23.656
Atomic orbital electron populations
1.21702 0.93656 1.03149 1.01568 1.20076 0.96715 0.86616 1.04641
1.23637 1.04133 0.97373 0.81390 1.70215 1.19495 1.05500 1.29326
1.22654 1.07046 0.96341 0.93793 1.23061 1.08078 0.90403 0.96708
1.45621 1.48406 1.12019 1.06753 1.21048 0.95701 1.01028 0.77304
0.87853 1.22177 0.98504 0.99511 1.01589 1.21898 0.98508 1.05364
0.91202 1.20532 0.82457 0.78229 0.87371 1.90742 1.28246 1.48991
1.77187 1.48614 1.09689 1.65962 1.10069 1.22637 0.78714 1.00800
1.00522 1.22772 0.98708 1.01943 0.92393 1.22586 0.91461 1.03162
0.98622 1.21519 0.97334 0.96894 0.80906 0.93157 1.20911 0.96510
0.95276 0.84515 1.42327 1.51084 1.38181 1.06475 1.19504 1.16773
1.10458 0.91483 0.91412 1.25550 1.02141 0.99447 0.99098 1.69790
1.45269 1.28801 1.17728 0.85214 0.78596 0.77999 0.77965 1.20812
1.21600 1.20072 0.92825 0.89935 0.93631 0.88196 0.89498 0.79913
0.78489 0.92224 0.90799 0.90905 0.85811 0.86215 0.87529 0.89642
0.87059 0.89921 0.91019 0.90678 0.96501 0.97366 0.79122 0.93751
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.22 9.89 71.98 0.71 -1.50 16
2 C -0.04 -0.67 6.08 29.85 0.18 -0.49 16
3 C 0.20 4.10 7.16 138.13 0.99 5.09 16
4 N -0.53 -12.68 11.25 -188.13 -2.12 -14.80 16
5 C -0.05 -1.00 11.87 83.53 0.99 -0.01 16
6 C -0.05 -0.81 10.70 83.09 0.89 0.08 16
7 N -0.45 -8.06 2.61 -491.91 -1.28 -9.34 16
8 C 0.15 2.77 2.64 44.99 0.12 2.89 16
9 H 0.10 2.08 6.49 -2.39 -0.02 2.06 16
10 C -0.16 -3.30 8.99 71.98 0.65 -2.65 16
11 C -0.13 -2.04 4.28 29.85 0.13 -1.91 16
12 C 0.52 13.43 7.29 87.66 0.64 14.07 16
13 O -0.57 -20.13 13.13 -3.02 -0.04 -20.17 16
14 N -0.61 -15.05 3.07 -788.49 -2.42 -17.46 16
15 C 0.09 1.38 6.64 86.78 0.58 1.96 16
16 C -0.12 -1.88 7.07 31.91 0.23 -1.65 16
17 C -0.12 -3.18 6.09 31.78 0.19 -2.98 16
18 C 0.14 4.54 2.92 45.34 0.13 4.67 16
19 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
20 C 0.16 6.67 5.66 86.38 0.49 7.16 16
21 N -0.74 -38.83 5.45 -343.46 -1.87 -40.70 16
22 C -0.25 -14.53 9.99 84.03 0.84 -13.69 16
23 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16
24 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16
25 N -0.97 -59.33 13.06 21.65 0.28 -59.05 16
26 Si 0.97 46.83 29.55 68.60 2.03 48.85 16
27 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16
28 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16
29 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16
30 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16
31 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16
32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16
33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
34 H 0.09 1.23 7.08 -2.39 -0.02 1.21 16
35 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16
36 H 0.20 1.96 8.06 -2.91 -0.02 1.93 16
37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
38 H 0.07 2.00 5.95 -2.39 -0.01 1.99 16
39 H 0.07 1.27 7.95 -2.39 -0.02 1.25 16
40 H 0.12 1.44 8.09 -2.39 -0.02 1.42 16
41 H 0.12 1.42 7.77 -2.39 -0.02 1.40 16
42 H 0.11 0.92 7.52 -2.39 -0.02 0.90 16
43 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
44 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16
45 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16
46 H 0.07 2.06 7.78 -2.39 -0.02 2.04 16
47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
48 H 0.02 0.72 8.04 -2.39 -0.02 0.70 16
49 H 0.01 0.40 6.89 -2.39 -0.02 0.38 16
50 H 0.38 20.57 7.44 -92.71 -0.69 19.88 16
51 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16
Total: -1.00 -77.25 406.88 3.02 -74.23
By element:
Atomic # 1 Polarization: 30.79 SS G_CDS: 0.22 Total: 31.01 kcal
Atomic # 6 Polarization: -0.78 SS G_CDS: 8.22 Total: 7.43 kcal
Atomic # 7 Polarization: -133.94 SS G_CDS: -7.41 Total: -141.35 kcal
Atomic # 8 Polarization: -20.13 SS G_CDS: -0.04 Total: -20.17 kcal
Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal
Total: -77.25 3.02 -74.23 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001569541755.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.190 kcal
(2) G-P(sol) polarization free energy of solvation -77.250 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.941 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.017 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.232 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.958 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.11 seconds