Wall clock time and date at job start Tue Mar 31 2020 20:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 C 1.50707 * 109.47195 * 240.00149 * 2 1 3 5 5 O 1.21280 * 119.99688 * 245.41386 * 4 2 1 6 6 N 1.34771 * 119.99757 * 65.41522 * 4 2 1 7 7 C 1.46503 * 119.99912 * 184.94941 * 6 4 2 8 8 H 1.09002 * 109.46851 * 326.40361 * 7 6 4 9 9 C 1.52995 * 109.47181 * 206.40258 * 7 6 4 10 10 N 1.46500 * 109.47017 * 54.99966 * 9 7 6 11 11 C 1.36944 * 119.99757 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.38816 * 119.99889 * 179.97438 * 11 10 9 14 14 N 1.31622 * 119.99482 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99981 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47062 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46908 * 120.00224 * 15 13 11 18 18 H 1.48499 * 109.46876 * 240.00239 * 15 13 11 19 19 C 1.53006 * 109.47008 * 86.40210 * 7 6 4 20 20 C 1.54266 * 110.02711 * 180.54172 * 19 7 6 21 21 C 1.54892 * 104.19177 * 217.10490 * 20 19 7 22 22 C 1.54888 * 102.74868 * 37.94275 * 21 20 19 23 23 C 1.53874 * 110.03150 * 63.37585 * 19 7 6 24 24 C 1.50703 * 109.47343 * 120.00225 * 2 1 3 25 25 C 1.34667 * 126.58580 * 356.86044 * 24 2 1 26 26 N 1.34132 * 108.01444 * 179.97438 * 25 24 2 27 27 C 1.30491 * 109.26067 * 0.02562 * 26 25 24 28 28 N 1.35042 * 108.69818 * 0.26126 * 27 26 25 29 29 H 0.97001 * 126.39875 * 179.74077 * 28 27 26 30 30 H 1.09002 * 109.47130 * 299.99644 * 1 2 3 31 31 H 1.09002 * 109.47093 * 60.00064 * 1 2 3 32 32 H 1.08999 * 109.47286 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47155 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47272 * 300.00144 * 3 2 1 35 35 H 1.09001 * 109.47312 * 60.00529 * 3 2 1 36 36 H 0.97003 * 120.00440 * 4.93890 * 6 4 2 37 37 H 1.08995 * 109.47151 * 175.00035 * 9 7 6 38 38 H 1.09003 * 109.47087 * 294.99697 * 9 7 6 39 39 H 0.96997 * 120.00249 * 359.97438 * 10 9 7 40 40 H 0.97001 * 119.99292 * 179.97438 * 14 13 11 41 41 H 1.08998 * 110.01866 * 301.97978 * 19 7 6 42 42 H 1.08994 * 110.49054 * 335.77816 * 20 19 7 43 43 H 1.08996 * 110.48844 * 98.43131 * 20 19 7 44 44 H 1.09004 * 110.75759 * 279.62489 * 21 20 19 45 45 H 1.08997 * 110.91554 * 156.33437 * 21 20 19 46 46 H 1.09003 * 110.48372 * 203.37759 * 22 21 20 47 47 H 1.09000 * 110.59647 * 80.79357 * 22 21 20 48 48 H 1.09005 * 110.02776 * 238.56491 * 23 19 7 49 49 H 1.08999 * 110.03520 * 359.94749 * 23 19 7 50 50 H 1.07994 * 125.99655 * 0.02562 * 25 24 2 51 51 H 1.08002 * 125.65562 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6464 -1.7506 -1.1219 6 7 1.7991 -0.1898 -2.4515 7 6 2.1913 -0.9327 -3.6518 8 1 3.1014 -1.4971 -3.4484 9 6 2.4447 0.0479 -4.7985 10 7 3.4333 1.0445 -4.3793 11 6 3.8211 2.0309 -5.2464 12 1 3.3985 2.0740 -6.2394 13 6 4.7574 2.9756 -4.8491 14 7 5.2728 2.9228 -3.6391 15 14 5.2869 4.3208 -6.0321 16 1 4.5655 4.1595 -7.3200 17 1 4.9660 5.6479 -5.4482 18 1 6.7499 4.2245 -6.2682 19 6 1.0700 -1.8971 -4.0437 20 6 1.4755 -2.6965 -5.2993 21 6 0.1597 -2.8304 -6.1055 22 6 -0.5186 -1.4558 -5.8835 23 6 -0.1978 -1.1082 -4.4152 24 6 2.0323 -0.7105 1.2304 25 6 1.2820 -1.2176 2.2271 26 7 2.1080 -1.7666 3.1301 27 6 3.3415 -1.6186 2.7311 28 7 3.3392 -0.9590 1.5528 29 1 4.1181 -0.7103 1.0308 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.3714 0.6768 -2.5358 37 1 2.8216 -0.4957 -5.6648 38 1 1.5127 0.5485 -5.0610 39 1 3.8131 1.0056 -3.4877 40 1 5.9273 3.5827 -3.3616 41 1 0.8581 -2.5778 -3.2192 42 1 2.2217 -2.1494 -5.8753 43 1 1.8534 -3.6799 -5.0199 44 1 -0.4579 -3.6349 -5.7061 45 1 0.3663 -2.9929 -7.1633 46 1 -1.5959 -1.5338 -6.0305 47 1 -0.0963 -0.7071 -6.5538 48 1 -1.0253 -1.4068 -3.7715 49 1 -0.0146 -0.0384 -4.3154 50 1 0.2042 -1.1881 2.2882 51 1 4.2192 -1.9628 3.2580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569612376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:26 Heat of formation + Delta-G solvation = 11.830398 kcal Electronic energy + Delta-G solvation = -30617.966425 eV Core-core repulsion = 26745.577452 eV Total energy + Delta-G solvation = -3872.388973 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.09690 -40.06165 -38.38274 -35.36928 -35.21322 -33.57298 -32.28645 -31.13658 -29.68676 -28.63894 -28.43988 -27.34936 -26.29786 -24.14464 -23.21058 -22.04412 -21.51648 -20.90968 -20.48576 -19.64815 -18.80978 -18.02892 -17.15041 -16.56533 -15.95054 -15.74523 -15.26149 -14.84485 -14.59314 -14.41250 -14.20272 -14.04761 -13.82976 -13.68375 -13.44406 -13.33100 -13.07076 -12.68837 -12.50191 -12.26474 -12.17638 -12.08077 -11.69583 -11.52648 -11.32877 -11.18072 -11.02807 -10.95843 -10.92940 -10.91439 -10.58581 -10.44055 -10.24736 -9.98524 -9.95935 -9.85882 -9.81838 -9.47280 -8.96692 -8.67927 -8.28813 -7.01937 -5.86513 -3.15412 2.13584 2.83024 3.20020 3.24803 3.36011 3.42503 3.44307 3.49037 4.46194 4.49355 4.68171 4.71254 4.76566 4.79733 4.84392 4.92516 5.05761 5.36167 5.39420 5.42536 5.46818 5.50380 5.54325 5.60106 5.60813 5.67509 5.70789 5.75261 5.76650 5.83301 5.86191 5.92515 5.95738 6.00730 6.05913 6.15676 6.18819 6.25347 6.26345 6.34186 6.41020 6.47732 6.54028 6.69665 6.79696 6.91473 7.47444 7.61547 7.79034 8.13727 8.31803 8.45544 9.44081 9.99834 10.35244 11.35973 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.004472 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.144862 B = 6259.652774 C = 8753.537718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.523 3.477 5 O -0.543 6.543 6 N -0.704 5.704 7 C 0.143 3.857 8 H 0.086 0.914 9 C 0.143 3.857 10 N -0.731 5.731 11 C -0.240 4.240 12 H 0.071 0.929 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.905 3.095 16 H -0.280 1.280 17 H -0.292 1.292 18 H -0.292 1.292 19 C -0.096 4.096 20 C -0.123 4.123 21 C -0.122 4.122 22 C -0.124 4.124 23 C -0.119 4.119 24 C 0.016 3.984 25 C -0.027 4.027 26 N -0.498 5.498 27 C 0.180 3.820 28 N -0.548 5.548 29 H 0.421 0.579 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.403 0.597 37 H 0.035 0.965 38 H 0.030 0.970 39 H 0.385 0.615 40 H 0.254 0.746 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.062 0.938 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.071 0.929 50 H 0.166 0.834 51 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.227 -7.544 5.089 14.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.012 4.012 3 C -0.200 4.200 4 C 0.308 3.692 5 O -0.420 6.420 6 N -0.354 5.354 7 C 0.038 3.962 8 H 0.104 0.896 9 C 0.015 3.985 10 N -0.376 5.376 11 C -0.371 4.371 12 H 0.089 0.911 13 C -0.207 4.207 14 N -0.580 5.580 15 Si 0.737 3.263 16 H -0.205 1.205 17 H -0.219 1.219 18 H -0.219 1.219 19 C -0.116 4.116 20 C -0.161 4.161 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.157 4.157 24 C -0.102 4.102 25 C -0.175 4.175 26 N -0.217 5.217 27 C -0.104 4.104 28 N -0.149 5.149 29 H 0.259 0.741 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.239 0.761 37 H 0.052 0.948 38 H 0.047 0.953 39 H 0.219 0.781 40 H 0.064 0.936 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.089 0.911 50 H 0.183 0.817 51 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -11.047 -8.590 5.763 15.134 hybrid contribution 1.082 1.656 -1.367 2.404 sum -9.966 -6.934 4.396 12.912 Atomic orbital electron populations 1.21811 0.90910 1.03162 1.03395 1.19262 0.97578 0.95557 0.88764 1.21921 1.02162 0.92489 1.03418 1.20326 0.79285 0.85148 0.84490 1.90685 1.40579 1.24038 1.86693 1.45909 1.61651 1.22826 1.04995 1.21253 0.97144 0.93084 0.84672 0.89568 1.21083 0.93435 0.90149 0.93814 1.42357 1.48217 1.30804 1.16188 1.19253 1.18634 1.03879 0.95354 0.91132 1.24720 0.99704 0.99543 0.96749 1.69669 1.32948 1.37581 1.17794 0.86145 0.78194 0.81898 0.80106 1.20542 1.21874 1.21885 1.22093 0.94995 0.96608 0.97942 1.22495 0.97860 0.99834 0.95900 1.22455 0.96598 0.97235 0.99697 1.22355 0.99711 0.97200 0.96874 1.22222 0.96742 1.00734 0.95997 1.20518 0.84203 1.06833 0.98664 1.21957 0.99354 1.03694 0.92527 1.70236 1.00083 1.21922 1.29478 1.24840 0.97931 1.00400 0.87225 1.43139 1.08350 1.43837 1.19575 0.74084 0.90761 0.91111 0.91552 0.91810 0.90723 0.91225 0.76146 0.94759 0.95262 0.78149 0.93602 0.91118 0.90373 0.91960 0.92022 0.91824 0.92261 0.91359 0.92511 0.91057 0.81687 0.77901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 7.36 37.15 0.27 -1.03 16 2 C -0.01 -0.09 0.87 -156.81 -0.14 -0.22 16 3 C -0.14 -1.74 8.30 37.16 0.31 -1.43 16 4 C 0.52 7.95 6.45 -10.98 -0.07 7.88 16 5 O -0.54 -10.07 15.38 5.56 0.09 -9.99 16 6 N -0.70 -10.31 3.92 -53.80 -0.21 -10.52 16 7 C 0.14 2.26 1.94 -67.93 -0.13 2.13 16 8 H 0.09 1.60 7.47 -51.93 -0.39 1.21 16 9 C 0.14 2.60 5.27 -4.04 -0.02 2.58 16 10 N -0.73 -17.06 5.43 -59.91 -0.33 -17.39 16 11 C -0.24 -6.32 9.99 -15.05 -0.15 -6.47 16 12 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 13 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 14 N -0.93 -26.79 13.06 55.49 0.72 -26.06 16 15 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 C -0.10 -1.28 2.96 -89.50 -0.26 -1.54 16 20 C -0.12 -1.53 6.19 -25.07 -0.16 -1.68 16 21 C -0.12 -1.30 6.91 -24.74 -0.17 -1.47 16 22 C -0.12 -1.34 6.83 -25.08 -0.17 -1.52 16 23 C -0.12 -1.39 5.62 -25.62 -0.14 -1.54 16 24 C 0.02 0.21 5.05 -81.60 -0.41 -0.20 16 25 C -0.03 -0.37 10.85 -17.81 -0.19 -0.57 16 26 N -0.50 -7.34 11.25 -14.67 -0.17 -7.51 16 27 C 0.18 2.25 13.04 -90.38 -1.18 1.07 16 28 N -0.55 -7.14 5.80 -10.30 -0.06 -7.20 16 29 H 0.42 5.17 8.96 -40.82 -0.37 4.80 16 30 H 0.07 0.60 7.85 -51.93 -0.41 0.20 16 31 H 0.07 0.61 8.13 -51.93 -0.42 0.19 16 32 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.91 7.19 -51.93 -0.37 0.54 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.40 5.62 7.50 -40.82 -0.31 5.31 16 37 H 0.03 0.65 6.29 -51.93 -0.33 0.32 16 38 H 0.03 0.52 6.13 -51.93 -0.32 0.20 16 39 H 0.38 9.61 7.33 -40.82 -0.30 9.31 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.08 1.05 5.85 -51.93 -0.30 0.75 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.88 5.85 -51.93 -0.30 0.58 16 50 H 0.17 1.90 7.33 -52.49 -0.38 1.51 16 51 H 0.20 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -32.31 400.26 -10.05 -42.36 By element: Atomic # 1 Polarization: 26.52 SS G_CDS: -8.39 Total: 18.13 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.71 Total: -4.40 kcal Atomic # 7 Polarization: -68.65 SS G_CDS: -0.04 Total: -68.68 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.99 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.31 -10.05 -42.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569612376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.186 kcal (2) G-P(sol) polarization free energy of solvation -32.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds