Wall clock time and date at job start Tue Mar 31 2020 20:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 C 1.50707 * 109.47195 * 240.00149 * 2 1 3 5 5 O 1.21280 * 119.99688 * 245.41386 * 4 2 1 6 6 N 1.34771 * 119.99757 * 65.41522 * 4 2 1 7 7 C 1.46503 * 119.99912 * 184.94941 * 6 4 2 8 8 H 1.09002 * 109.46851 * 326.40361 * 7 6 4 9 9 C 1.52995 * 109.47181 * 206.40258 * 7 6 4 10 10 N 1.46500 * 109.47017 * 54.99966 * 9 7 6 11 11 C 1.36944 * 119.99757 * 179.97438 * 10 9 7 12 12 H 1.07999 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.38816 * 119.99889 * 179.97438 * 11 10 9 14 14 N 1.31622 * 119.99482 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99981 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47062 * 0.02562 * 15 13 11 17 17 H 1.48494 * 109.46908 * 120.00224 * 15 13 11 18 18 H 1.48499 * 109.46876 * 240.00239 * 15 13 11 19 19 C 1.53006 * 109.47008 * 86.40210 * 7 6 4 20 20 C 1.54266 * 110.02711 * 180.54172 * 19 7 6 21 21 C 1.54892 * 104.19177 * 217.10490 * 20 19 7 22 22 C 1.54888 * 102.74868 * 37.94275 * 21 20 19 23 23 C 1.53874 * 110.03150 * 63.37585 * 19 7 6 24 24 C 1.50703 * 109.47343 * 120.00225 * 2 1 3 25 25 C 1.34667 * 126.58580 * 356.86044 * 24 2 1 26 26 N 1.34132 * 108.01444 * 179.97438 * 25 24 2 27 27 C 1.30491 * 109.26067 * 0.02562 * 26 25 24 28 28 N 1.35042 * 108.69818 * 0.26126 * 27 26 25 29 29 H 0.97001 * 126.39875 * 179.74077 * 28 27 26 30 30 H 1.09002 * 109.47130 * 299.99644 * 1 2 3 31 31 H 1.09002 * 109.47093 * 60.00064 * 1 2 3 32 32 H 1.08999 * 109.47286 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47155 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47272 * 300.00144 * 3 2 1 35 35 H 1.09001 * 109.47312 * 60.00529 * 3 2 1 36 36 H 0.97003 * 120.00440 * 4.93890 * 6 4 2 37 37 H 1.08995 * 109.47151 * 175.00035 * 9 7 6 38 38 H 1.09003 * 109.47087 * 294.99697 * 9 7 6 39 39 H 0.96997 * 120.00249 * 359.97438 * 10 9 7 40 40 H 0.97001 * 119.99292 * 179.97438 * 14 13 11 41 41 H 1.08998 * 110.01866 * 301.97978 * 19 7 6 42 42 H 1.08994 * 110.49054 * 335.77816 * 20 19 7 43 43 H 1.08996 * 110.48844 * 98.43131 * 20 19 7 44 44 H 1.09004 * 110.75759 * 279.62489 * 21 20 19 45 45 H 1.08997 * 110.91554 * 156.33437 * 21 20 19 46 46 H 1.09003 * 110.48372 * 203.37759 * 22 21 20 47 47 H 1.09000 * 110.59647 * 80.79357 * 22 21 20 48 48 H 1.09005 * 110.02776 * 238.56491 * 23 19 7 49 49 H 1.08999 * 110.03520 * 359.94749 * 23 19 7 50 50 H 1.07994 * 125.99655 * 0.02562 * 25 24 2 51 51 H 1.08002 * 125.65562 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 8 2.6464 -1.7506 -1.1219 6 7 1.7991 -0.1898 -2.4515 7 6 2.1913 -0.9327 -3.6518 8 1 3.1014 -1.4971 -3.4484 9 6 2.4447 0.0479 -4.7985 10 7 3.4333 1.0445 -4.3793 11 6 3.8211 2.0309 -5.2464 12 1 3.3985 2.0740 -6.2394 13 6 4.7574 2.9756 -4.8491 14 7 5.2728 2.9228 -3.6391 15 14 5.2869 4.3208 -6.0321 16 1 4.5655 4.1595 -7.3200 17 1 4.9660 5.6479 -5.4482 18 1 6.7499 4.2245 -6.2682 19 6 1.0700 -1.8971 -4.0437 20 6 1.4755 -2.6965 -5.2993 21 6 0.1597 -2.8304 -6.1055 22 6 -0.5186 -1.4558 -5.8835 23 6 -0.1978 -1.1082 -4.4152 24 6 2.0323 -0.7105 1.2304 25 6 1.2820 -1.2176 2.2271 26 7 2.1080 -1.7666 3.1301 27 6 3.3415 -1.6186 2.7311 28 7 3.3392 -0.9590 1.5528 29 1 4.1181 -0.7103 1.0308 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.3714 0.6768 -2.5358 37 1 2.8216 -0.4957 -5.6648 38 1 1.5127 0.5485 -5.0610 39 1 3.8131 1.0056 -3.4877 40 1 5.9273 3.5827 -3.3616 41 1 0.8581 -2.5778 -3.2192 42 1 2.2217 -2.1494 -5.8753 43 1 1.8534 -3.6799 -5.0199 44 1 -0.4579 -3.6349 -5.7061 45 1 0.3663 -2.9929 -7.1633 46 1 -1.5959 -1.5338 -6.0305 47 1 -0.0963 -0.7071 -6.5538 48 1 -1.0253 -1.4068 -3.7715 49 1 -0.0146 -0.0384 -4.3154 50 1 0.2042 -1.1881 2.2882 51 1 4.2192 -1.9628 3.2580 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569612376.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:24 Heat of formation + Delta-G solvation = -7.645882 kcal Electronic energy + Delta-G solvation = -30618.810980 eV Core-core repulsion = 26745.577452 eV Total energy + Delta-G solvation = -3873.233528 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.11540 -41.27375 -39.49901 -36.74904 -36.39318 -35.17491 -33.32516 -32.88157 -30.99083 -29.60750 -29.43995 -28.22793 -27.81727 -25.48311 -24.67881 -23.40890 -22.61493 -21.95392 -21.42410 -20.73311 -20.00187 -19.36172 -18.81698 -17.71180 -17.24802 -16.93850 -16.38244 -16.31027 -15.85280 -15.57295 -15.31744 -15.19287 -15.03330 -14.98839 -14.87225 -14.39892 -14.35190 -13.96296 -13.63070 -13.46150 -13.31135 -13.08181 -13.01258 -12.81372 -12.72817 -12.54084 -12.30944 -12.19066 -12.06481 -11.91480 -11.87727 -11.81267 -11.69551 -11.35325 -11.24494 -11.05331 -10.93133 -10.90602 -10.66460 -9.95782 -9.31228 -8.98064 -7.94579 -5.22780 1.11678 1.47308 1.48882 1.57660 1.61708 2.12855 2.28258 2.34587 2.55683 3.40339 3.46263 3.60979 3.67696 3.72391 3.83812 3.92068 3.94280 4.02212 4.12026 4.21173 4.37345 4.49813 4.52815 4.59595 4.64955 4.68522 4.68737 4.70525 4.73725 4.85176 4.86671 4.91735 4.93127 4.94353 5.09754 5.12991 5.15475 5.18314 5.19381 5.30323 5.35465 5.38443 5.50479 5.51844 5.56211 5.62538 5.79870 6.26585 6.47861 6.57901 7.12505 7.23640 7.34613 8.07608 8.31997 9.28446 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008282 B = 0.004472 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.144862 B = 6259.652774 C = 8753.537718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.003 3.997 3 C -0.136 4.136 4 C 0.520 3.480 5 O -0.580 6.580 6 N -0.697 5.697 7 C 0.154 3.846 8 H 0.053 0.947 9 C 0.148 3.852 10 N -0.741 5.741 11 C -0.239 4.239 12 H 0.077 0.923 13 C -0.069 4.069 14 N -0.965 5.965 15 Si 0.966 3.034 16 H -0.266 1.266 17 H -0.293 1.293 18 H -0.299 1.299 19 C -0.087 4.087 20 C -0.126 4.126 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.001 4.001 25 C -0.035 4.035 26 N -0.529 5.529 27 C 0.182 3.818 28 N -0.554 5.554 29 H 0.422 0.578 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.408 0.592 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.061 0.939 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.060 0.940 48 H 0.071 0.929 49 H 0.064 0.936 50 H 0.184 0.816 51 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.245 -7.424 4.471 15.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.002 4.002 3 C -0.194 4.194 4 C 0.307 3.693 5 O -0.460 6.460 6 N -0.347 5.347 7 C 0.049 3.951 8 H 0.071 0.929 9 C 0.022 3.978 10 N -0.384 5.384 11 C -0.371 4.371 12 H 0.095 0.905 13 C -0.261 4.261 14 N -0.616 5.616 15 Si 0.796 3.204 16 H -0.190 1.190 17 H -0.221 1.221 18 H -0.227 1.227 19 C -0.108 4.108 20 C -0.164 4.164 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.153 4.153 24 C -0.118 4.118 25 C -0.182 4.182 26 N -0.248 5.248 27 C -0.101 4.101 28 N -0.155 5.155 29 H 0.260 0.740 30 H 0.113 0.887 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.058 0.942 34 H 0.093 0.907 35 H 0.106 0.894 36 H 0.245 0.755 37 H 0.051 0.949 38 H 0.063 0.937 39 H 0.206 0.794 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.079 0.921 48 H 0.090 0.910 49 H 0.083 0.917 50 H 0.201 0.799 51 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -13.114 -8.473 5.106 16.427 hybrid contribution 1.736 1.536 -1.175 2.599 sum -11.378 -6.936 3.930 13.893 Atomic orbital electron populations 1.21861 0.88433 1.03624 1.05094 1.19246 0.99384 0.94779 0.86758 1.21878 1.00618 0.92635 1.04287 1.20870 0.78449 0.84741 0.85229 1.90663 1.42254 1.25860 1.87210 1.45844 1.61289 1.22883 1.04721 1.21019 0.97088 0.92648 0.84343 0.92880 1.21169 0.92594 0.89530 0.94551 1.42512 1.49105 1.31340 1.15404 1.19618 1.17788 1.03906 0.95762 0.90522 1.25441 1.00500 1.01973 0.98222 1.69815 1.33847 1.38441 1.19498 0.85174 0.77174 0.79177 0.78832 1.19033 1.22058 1.22711 1.21995 0.94792 0.95977 0.97994 1.22506 0.98781 0.99475 0.95639 1.22441 0.95359 0.97599 0.99960 1.22356 1.00904 0.96919 0.95778 1.22193 0.96075 0.99910 0.97088 1.20758 0.84468 1.07483 0.99118 1.22322 1.00302 1.03292 0.92325 1.70250 1.01063 1.23134 1.30398 1.25567 0.98560 0.99148 0.86866 1.43264 1.08431 1.43924 1.19834 0.74029 0.88707 0.89822 0.91687 0.94166 0.90743 0.89372 0.75526 0.94919 0.93691 0.79429 0.94226 0.92025 0.91716 0.91935 0.90865 0.90882 0.90344 0.92128 0.91049 0.91690 0.79891 0.74625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 7.36 71.98 0.53 -1.77 16 2 C 0.00 0.07 0.87 -53.67 -0.05 0.02 16 3 C -0.14 -3.29 8.30 71.98 0.60 -2.69 16 4 C 0.52 16.02 6.45 87.66 0.57 16.58 16 5 O -0.58 -22.15 15.38 -3.03 -0.05 -22.20 16 6 N -0.70 -20.52 3.92 -442.52 -1.73 -22.25 16 7 C 0.15 4.93 1.94 44.99 0.09 5.02 16 8 H 0.05 2.07 7.47 -2.39 -0.02 2.05 16 9 C 0.15 5.36 5.27 86.38 0.45 5.82 16 10 N -0.74 -34.87 5.43 -343.45 -1.87 -36.73 16 11 C -0.24 -12.52 9.99 84.03 0.84 -11.68 16 12 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 13 C -0.07 -3.76 5.50 84.86 0.47 -3.29 16 14 N -0.97 -56.44 13.06 21.65 0.28 -56.16 16 15 Si 0.97 44.37 29.55 68.60 2.03 46.40 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 17 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 18 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 19 C -0.09 -2.26 2.96 -10.07 -0.03 -2.29 16 20 C -0.13 -3.03 6.19 31.67 0.20 -2.83 16 21 C -0.12 -2.21 6.91 31.89 0.22 -1.99 16 22 C -0.12 -2.33 6.83 31.67 0.22 -2.11 16 23 C -0.12 -2.45 5.62 31.32 0.18 -2.27 16 24 C 0.00 -0.02 5.05 40.95 0.21 0.18 16 25 C -0.03 -0.92 10.85 83.52 0.91 -0.02 16 26 N -0.53 -15.21 11.25 -200.32 -2.25 -17.46 16 27 C 0.18 4.45 13.04 180.27 2.35 6.80 16 28 N -0.55 -14.48 5.80 -186.50 -1.08 -15.56 16 29 H 0.42 10.70 8.96 -92.71 -0.83 9.87 16 30 H 0.09 1.28 7.85 -2.39 -0.02 1.27 16 31 H 0.08 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.06 1.17 8.07 -2.39 -0.02 1.15 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.77 7.19 -2.39 -0.02 1.76 16 35 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.41 11.19 7.50 -92.71 -0.70 10.50 16 37 H 0.03 1.23 6.29 -2.39 -0.02 1.21 16 38 H 0.05 1.54 6.13 -2.39 -0.01 1.52 16 39 H 0.37 19.13 7.33 -92.71 -0.68 18.45 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.06 1.73 5.85 -2.39 -0.01 1.71 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 49 H 0.06 1.47 5.85 -2.39 -0.01 1.46 16 50 H 0.18 3.92 7.33 -2.91 -0.02 3.90 16 51 H 0.24 3.70 8.06 -2.91 -0.02 3.67 16 Total: -1.00 -69.75 400.26 1.82 -67.93 By element: Atomic # 1 Polarization: 53.79 SS G_CDS: -1.25 Total: 52.54 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: 7.74 Total: 3.48 kcal Atomic # 7 Polarization: -141.51 SS G_CDS: -6.65 Total: -148.16 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.05 Total: -22.20 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -69.75 1.82 -67.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569612376.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.288 kcal (2) G-P(sol) polarization free energy of solvation -69.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds